Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2050

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2048 and B158DRAFT_2049 are separated by 330 nucleotidesB158DRAFT_2049 and B158DRAFT_2050 are separated by 99 nucleotidesB158DRAFT_2050 and B158DRAFT_2051 are separated by 126 nucleotidesB158DRAFT_2051 and B158DRAFT_2052 are separated by 98 nucleotides B158DRAFT_2048: B158DRAFT_2048 - Uncharacterized conserved protein, at 182,040 to 182,711 _2048 B158DRAFT_2049: B158DRAFT_2049 - hypothetical protein, at 183,042 to 183,575 _2049 B158DRAFT_2050: B158DRAFT_2050 - hypothetical protein, at 183,675 to 185,612 _2050 B158DRAFT_2051: B158DRAFT_2051 - tRNA_Met_CAT, at 185,739 to 185,815 _2051 B158DRAFT_2052: B158DRAFT_2052 - GTP-binding protein YchF, at 185,914 to 187,005 _2052 Position (kb) 183 184 185 186Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 182.725 kb on - strandat 182.735 kb on - strandat 182.770 kb on - strandat 182.840 kb on + strandat 182.841 kb on - strandat 182.841 kb on - strandat 182.846 kb on - strandat 182.854 kb on - strandat 182.988 kb on - strandat 183.068 kb on + strandat 183.224 kb on + strand, within B158DRAFT_2049at 183.232 kb on - strand, within B158DRAFT_2049at 183.232 kb on - strand, within B158DRAFT_2049at 183.232 kb on - strand, within B158DRAFT_2049at 183.256 kb on - strand, within B158DRAFT_2049at 183.267 kb on + strand, within B158DRAFT_2049at 183.417 kb on + strand, within B158DRAFT_2049at 183.425 kb on - strand, within B158DRAFT_2049at 183.515 kb on - strand, within B158DRAFT_2049at 183.569 kb on - strandat 183.633 kb on + strandat 183.658 kb on + strandat 183.721 kb on + strandat 183.992 kb on - strand, within B158DRAFT_2050at 184.127 kb on - strand, within B158DRAFT_2050at 184.154 kb on + strand, within B158DRAFT_2050at 184.162 kb on - strand, within B158DRAFT_2050at 184.162 kb on - strand, within B158DRAFT_2050at 184.212 kb on - strand, within B158DRAFT_2050at 184.227 kb on - strand, within B158DRAFT_2050at 184.227 kb on - strand, within B158DRAFT_2050at 184.370 kb on + strand, within B158DRAFT_2050at 184.410 kb on - strand, within B158DRAFT_2050at 184.570 kb on + strand, within B158DRAFT_2050at 184.631 kb on + strand, within B158DRAFT_2050at 184.631 kb on + strand, within B158DRAFT_2050at 184.631 kb on + strand, within B158DRAFT_2050at 184.732 kb on + strand, within B158DRAFT_2050at 184.784 kb on + strand, within B158DRAFT_2050at 184.784 kb on + strand, within B158DRAFT_2050at 184.789 kb on + strand, within B158DRAFT_2050at 184.982 kb on + strand, within B158DRAFT_2050at 185.447 kb on - strandat 185.547 kb on - strandat 185.548 kb on + strandat 185.555 kb on + strandat 185.556 kb on - strandat 185.911 kb on + strandat 185.919 kb on - strandat 185.919 kb on - strandat 185.940 kb on - strandat 185.957 kb on + strandat 185.965 kb on - strandat 185.965 kb on - strandat 186.055 kb on + strand, within B158DRAFT_2052at 186.055 kb on + strand, within B158DRAFT_2052at 186.063 kb on - strand, within B158DRAFT_2052at 186.076 kb on + strand, within B158DRAFT_2052at 186.178 kb on - strand, within B158DRAFT_2052at 186.179 kb on - strand, within B158DRAFT_2052at 186.181 kb on + strand, within B158DRAFT_2052at 186.181 kb on + strand, within B158DRAFT_2052at 186.181 kb on + strand, within B158DRAFT_2052at 186.181 kb on + strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.205 kb on + strand, within B158DRAFT_2052at 186.205 kb on + strand, within B158DRAFT_2052at 186.205 kb on + strand, within B158DRAFT_2052at 186.210 kb on + strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.215 kb on + strand, within B158DRAFT_2052at 186.215 kb on + strand, within B158DRAFT_2052at 186.223 kb on - strand, within B158DRAFT_2052at 186.223 kb on - strand, within B158DRAFT_2052at 186.223 kb on - strand, within B158DRAFT_2052at 186.225 kb on + strand, within B158DRAFT_2052at 186.233 kb on - strand, within B158DRAFT_2052at 186.236 kb on + strand, within B158DRAFT_2052at 186.244 kb on - strand, within B158DRAFT_2052at 186.298 kb on + strand, within B158DRAFT_2052at 186.306 kb on - strand, within B158DRAFT_2052at 186.377 kb on + strand, within B158DRAFT_2052at 186.377 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.467 kb on - strand, within B158DRAFT_2052at 186.469 kb on + strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.590 kb on + strand, within B158DRAFT_2052

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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182,725 - -0.9
182,735 - +0.3
182,770 - -0.8
182,840 + -0.6
182,841 - -0.2
182,841 - -0.9
182,846 - +0.5
182,854 - +0.1
182,988 - +1.3
183,068 + +0.1
183,224 + B158DRAFT_2049 0.34 -1.1
183,232 - B158DRAFT_2049 0.36 -0.3
183,232 - B158DRAFT_2049 0.36 +0.5
183,232 - B158DRAFT_2049 0.36 +0.5
183,256 - B158DRAFT_2049 0.40 +0.2
183,267 + B158DRAFT_2049 0.42 +0.6
183,417 + B158DRAFT_2049 0.70 -0.5
183,425 - B158DRAFT_2049 0.72 +0.0
183,515 - B158DRAFT_2049 0.89 +0.4
183,569 - -0.1
183,633 + -0.8
183,658 + -0.8
183,721 + +0.7
183,992 - B158DRAFT_2050 0.16 +0.5
184,127 - B158DRAFT_2050 0.23 -0.3
184,154 + B158DRAFT_2050 0.25 -2.5
184,162 - B158DRAFT_2050 0.25 +0.6
184,162 - B158DRAFT_2050 0.25 -0.1
184,212 - B158DRAFT_2050 0.28 +0.1
184,227 - B158DRAFT_2050 0.28 -1.0
184,227 - B158DRAFT_2050 0.28 -0.6
184,370 + B158DRAFT_2050 0.36 -0.4
184,410 - B158DRAFT_2050 0.38 -0.8
184,570 + B158DRAFT_2050 0.46 +1.0
184,631 + B158DRAFT_2050 0.49 -1.2
184,631 + B158DRAFT_2050 0.49 +1.3
184,631 + B158DRAFT_2050 0.49 -0.6
184,732 + B158DRAFT_2050 0.55 -3.3
184,784 + B158DRAFT_2050 0.57 +0.2
184,784 + B158DRAFT_2050 0.57 -0.1
184,789 + B158DRAFT_2050 0.57 +0.4
184,982 + B158DRAFT_2050 0.67 +0.3
185,447 - +0.4
185,547 - +2.4
185,548 + -0.3
185,555 + +3.2
185,556 - +0.5
185,911 + -0.2
185,919 - -0.7
185,919 - +0.1
185,940 - +1.2
185,957 + -2.9
185,965 - +0.2
185,965 - +0.3
186,055 + B158DRAFT_2052 0.13 -0.1
186,055 + B158DRAFT_2052 0.13 -0.2
186,063 - B158DRAFT_2052 0.14 +1.5
186,076 + B158DRAFT_2052 0.15 -1.4
186,178 - B158DRAFT_2052 0.24 +0.9
186,179 - B158DRAFT_2052 0.24 +0.2
186,181 + B158DRAFT_2052 0.24 -0.1
186,181 + B158DRAFT_2052 0.24 +0.5
186,181 + B158DRAFT_2052 0.24 +0.2
186,181 + B158DRAFT_2052 0.24 +0.0
186,189 - B158DRAFT_2052 0.25 +0.6
186,189 - B158DRAFT_2052 0.25 +1.2
186,189 - B158DRAFT_2052 0.25 -0.9
186,189 - B158DRAFT_2052 0.25 -0.7
186,189 - B158DRAFT_2052 0.25 -0.3
186,205 + B158DRAFT_2052 0.27 -0.2
186,205 + B158DRAFT_2052 0.27 +0.1
186,205 + B158DRAFT_2052 0.27 +0.3
186,210 + B158DRAFT_2052 0.27 +0.3
186,213 - B158DRAFT_2052 0.27 +0.1
186,213 - B158DRAFT_2052 0.27 +0.4
186,213 - B158DRAFT_2052 0.27 -3.2
186,213 - B158DRAFT_2052 0.27 +0.8
186,213 - B158DRAFT_2052 0.27 +0.2
186,215 + B158DRAFT_2052 0.28 -0.6
186,215 + B158DRAFT_2052 0.28 -0.3
186,223 - B158DRAFT_2052 0.28 -0.2
186,223 - B158DRAFT_2052 0.28 -3.6
186,223 - B158DRAFT_2052 0.28 +1.6
186,225 + B158DRAFT_2052 0.28 +0.2
186,233 - B158DRAFT_2052 0.29 -0.3
186,236 + B158DRAFT_2052 0.29 -0.7
186,244 - B158DRAFT_2052 0.30 -0.3
186,298 + B158DRAFT_2052 0.35 -0.3
186,306 - B158DRAFT_2052 0.36 -0.2
186,377 + B158DRAFT_2052 0.42 -0.8
186,377 + B158DRAFT_2052 0.42 -0.2
186,459 + B158DRAFT_2052 0.50 -0.0
186,459 + B158DRAFT_2052 0.50 -1.3
186,459 + B158DRAFT_2052 0.50 +0.2
186,459 + B158DRAFT_2052 0.50 +0.3
186,459 + B158DRAFT_2052 0.50 -1.4
186,459 + B158DRAFT_2052 0.50 -0.0
186,459 + B158DRAFT_2052 0.50 -1.1
186,459 + B158DRAFT_2052 0.50 +0.9
186,467 - B158DRAFT_2052 0.51 +1.7
186,469 + B158DRAFT_2052 0.51 -0.7
186,477 - B158DRAFT_2052 0.52 -0.2
186,477 - B158DRAFT_2052 0.52 +0.2
186,477 - B158DRAFT_2052 0.52 -0.2
186,477 - B158DRAFT_2052 0.52 +0.7
186,477 - B158DRAFT_2052 0.52 +0.9
186,590 + B158DRAFT_2052 0.62 +0.3

Or see this region's nucleotide sequence