Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1581 and B158DRAFT_1582 are separated by 108 nucleotides B158DRAFT_1582 and B158DRAFT_1583 are separated by 87 nucleotides
B158DRAFT_1581: B158DRAFT_1581 - diguanylate cyclase (GGDEF) domain, at 1,640,710 to 1,642,599
_1581
B158DRAFT_1582: B158DRAFT_1582 - channel protein, hemolysin III family, at 1,642,708 to 1,643,403
_1582
B158DRAFT_1583: B158DRAFT_1583 - diguanylate cyclase, at 1,643,491 to 1,644,963
_1583
Position (kb)
1642
1643
1644 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1641.718 kb on - strand, within B158DRAFT_1581 at 1641.722 kb on + strand, within B158DRAFT_1581 at 1641.723 kb on + strand, within B158DRAFT_1581 at 1641.760 kb on + strand, within B158DRAFT_1581 at 1641.760 kb on + strand, within B158DRAFT_1581 at 1641.768 kb on - strand, within B158DRAFT_1581 at 1641.768 kb on - strand, within B158DRAFT_1581 at 1641.800 kb on - strand, within B158DRAFT_1581 at 1641.808 kb on - strand, within B158DRAFT_1581 at 1641.856 kb on + strand, within B158DRAFT_1581 at 1641.863 kb on + strand, within B158DRAFT_1581 at 1641.864 kb on - strand, within B158DRAFT_1581 at 1641.864 kb on - strand, within B158DRAFT_1581 at 1641.869 kb on - strand, within B158DRAFT_1581 at 1641.930 kb on - strand, within B158DRAFT_1581 at 1641.938 kb on - strand, within B158DRAFT_1581 at 1641.946 kb on - strand, within B158DRAFT_1581 at 1641.946 kb on - strand, within B158DRAFT_1581 at 1641.981 kb on + strand, within B158DRAFT_1581 at 1641.983 kb on + strand, within B158DRAFT_1581 at 1641.983 kb on + strand, within B158DRAFT_1581 at 1641.991 kb on - strand, within B158DRAFT_1581 at 1642.026 kb on - strand, within B158DRAFT_1581 at 1642.064 kb on - strand, within B158DRAFT_1581 at 1642.097 kb on + strand, within B158DRAFT_1581 at 1642.141 kb on - strand, within B158DRAFT_1581 at 1642.227 kb on + strand, within B158DRAFT_1581 at 1642.277 kb on - strand, within B158DRAFT_1581 at 1642.308 kb on + strand, within B158DRAFT_1581 at 1642.477 kb on + strand at 1642.478 kb on + strand at 1642.478 kb on + strand at 1642.479 kb on - strand at 1642.486 kb on - strand at 1642.496 kb on + strand at 1642.496 kb on + strand at 1642.504 kb on + strand at 1642.504 kb on - strand at 1642.504 kb on - strand at 1642.506 kb on + strand at 1642.511 kb on + strand at 1642.511 kb on + strand at 1642.511 kb on + strand at 1642.521 kb on + strand at 1642.546 kb on - strand at 1642.548 kb on + strand at 1642.567 kb on + strand at 1642.588 kb on + strand at 1642.606 kb on - strand at 1642.606 kb on - strand at 1642.641 kb on + strand at 1642.654 kb on + strand at 1642.683 kb on + strand at 1642.696 kb on - strand at 1642.696 kb on - strand at 1642.727 kb on + strand at 1642.727 kb on + strand at 1642.727 kb on + strand at 1642.727 kb on + strand at 1642.735 kb on - strand at 1642.737 kb on + strand at 1642.737 kb on + strand at 1642.807 kb on + strand, within B158DRAFT_1582 at 1642.807 kb on + strand, within B158DRAFT_1582 at 1642.807 kb on + strand, within B158DRAFT_1582 at 1642.814 kb on - strand, within B158DRAFT_1582 at 1642.815 kb on - strand, within B158DRAFT_1582 at 1642.815 kb on - strand, within B158DRAFT_1582 at 1642.815 kb on - strand, within B158DRAFT_1582 at 1642.820 kb on + strand, within B158DRAFT_1582 at 1642.826 kb on + strand, within B158DRAFT_1582 at 1642.838 kb on + strand, within B158DRAFT_1582 at 1642.846 kb on - strand, within B158DRAFT_1582 at 1642.860 kb on - strand, within B158DRAFT_1582 at 1642.863 kb on + strand, within B158DRAFT_1582 at 1642.863 kb on + strand, within B158DRAFT_1582 at 1642.871 kb on - strand, within B158DRAFT_1582 at 1642.871 kb on - strand, within B158DRAFT_1582 at 1642.912 kb on - strand, within B158DRAFT_1582 at 1642.973 kb on - strand, within B158DRAFT_1582 at 1643.000 kb on + strand, within B158DRAFT_1582 at 1643.000 kb on + strand, within B158DRAFT_1582 at 1643.000 kb on + strand, within B158DRAFT_1582 at 1643.000 kb on + strand, within B158DRAFT_1582 at 1643.008 kb on - strand, within B158DRAFT_1582 at 1643.008 kb on - strand, within B158DRAFT_1582 at 1643.047 kb on - strand, within B158DRAFT_1582 at 1643.063 kb on + strand, within B158DRAFT_1582 at 1643.072 kb on - strand, within B158DRAFT_1582 at 1643.074 kb on + strand, within B158DRAFT_1582 at 1643.074 kb on + strand, within B158DRAFT_1582 at 1643.082 kb on - strand, within B158DRAFT_1582 at 1643.177 kb on + strand, within B158DRAFT_1582 at 1643.177 kb on + strand, within B158DRAFT_1582 at 1643.185 kb on - strand, within B158DRAFT_1582 at 1643.196 kb on + strand, within B158DRAFT_1582 at 1643.240 kb on - strand, within B158DRAFT_1582 at 1643.274 kb on + strand, within B158DRAFT_1582 at 1643.277 kb on - strand, within B158DRAFT_1582 at 1643.277 kb on - strand, within B158DRAFT_1582 at 1643.282 kb on - strand, within B158DRAFT_1582 at 1643.282 kb on - strand, within B158DRAFT_1582 at 1643.335 kb on - strand at 1643.353 kb on - strand at 1643.365 kb on + strand at 1643.373 kb on + strand at 1643.445 kb on + strand at 1643.445 kb on + strand at 1643.453 kb on - strand at 1643.453 kb on - strand at 1643.481 kb on - strand at 1643.486 kb on + strand at 1643.501 kb on + strand at 1643.509 kb on - strand at 1643.569 kb on - strand at 1643.569 kb on - strand at 1643.569 kb on - strand at 1643.602 kb on - strand at 1643.616 kb on - strand at 1643.670 kb on + strand, within B158DRAFT_1583 at 1643.670 kb on + strand, within B158DRAFT_1583 at 1643.670 kb on + strand, within B158DRAFT_1583 at 1643.670 kb on + strand, within B158DRAFT_1583 at 1643.678 kb on - strand, within B158DRAFT_1583 at 1643.678 kb on - strand, within B158DRAFT_1583 at 1643.678 kb on - strand, within B158DRAFT_1583 at 1643.678 kb on - strand, within B158DRAFT_1583 at 1643.678 kb on - strand, within B158DRAFT_1583 at 1643.678 kb on - strand, within B158DRAFT_1583 at 1643.749 kb on + strand, within B158DRAFT_1583 at 1643.779 kb on - strand, within B158DRAFT_1583 at 1643.781 kb on + strand, within B158DRAFT_1583 at 1643.783 kb on + strand, within B158DRAFT_1583 at 1643.783 kb on + strand, within B158DRAFT_1583 at 1643.785 kb on - strand, within B158DRAFT_1583 at 1643.800 kb on + strand, within B158DRAFT_1583 at 1643.802 kb on + strand, within B158DRAFT_1583 at 1643.802 kb on + strand, within B158DRAFT_1583 at 1643.808 kb on - strand, within B158DRAFT_1583 at 1643.810 kb on - strand, within B158DRAFT_1583 at 1643.843 kb on + strand, within B158DRAFT_1583 at 1643.893 kb on - strand, within B158DRAFT_1583 at 1643.895 kb on + strand, within B158DRAFT_1583 at 1643.895 kb on + strand, within B158DRAFT_1583 at 1643.895 kb on - strand, within B158DRAFT_1583 at 1643.903 kb on - strand, within B158DRAFT_1583 at 1643.933 kb on - strand, within B158DRAFT_1583 at 1643.938 kb on - strand, within B158DRAFT_1583 at 1643.979 kb on + strand, within B158DRAFT_1583 at 1644.007 kb on + strand, within B158DRAFT_1583 at 1644.024 kb on - strand, within B158DRAFT_1583 at 1644.033 kb on - strand, within B158DRAFT_1583 at 1644.069 kb on + strand, within B158DRAFT_1583 at 1644.070 kb on + strand, within B158DRAFT_1583 at 1644.078 kb on - strand, within B158DRAFT_1583 at 1644.080 kb on - strand, within B158DRAFT_1583 at 1644.080 kb on - strand, within B158DRAFT_1583 at 1644.088 kb on - strand, within B158DRAFT_1583 at 1644.119 kb on - strand, within B158DRAFT_1583 at 1644.130 kb on - strand, within B158DRAFT_1583 at 1644.194 kb on + strand, within B158DRAFT_1583 at 1644.225 kb on - strand, within B158DRAFT_1583 at 1644.237 kb on - strand, within B158DRAFT_1583 at 1644.255 kb on + strand, within B158DRAFT_1583 at 1644.262 kb on + strand, within B158DRAFT_1583 at 1644.262 kb on + strand, within B158DRAFT_1583 at 1644.268 kb on + strand, within B158DRAFT_1583 at 1644.270 kb on - strand, within B158DRAFT_1583 at 1644.270 kb on - strand, within B158DRAFT_1583 at 1644.270 kb on - strand, within B158DRAFT_1583 at 1644.270 kb on - strand, within B158DRAFT_1583 at 1644.295 kb on - strand, within B158DRAFT_1583
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,641,718 - B158DRAFT_1581 0.53 -2.8 1,641,722 + B158DRAFT_1581 0.54 +2.1 1,641,723 + B158DRAFT_1581 0.54 +0.1 1,641,760 + B158DRAFT_1581 0.56 -0.1 1,641,760 + B158DRAFT_1581 0.56 +1.2 1,641,768 - B158DRAFT_1581 0.56 +1.3 1,641,768 - B158DRAFT_1581 0.56 -0.6 1,641,800 - B158DRAFT_1581 0.58 -0.9 1,641,808 - B158DRAFT_1581 0.58 +0.6 1,641,856 + B158DRAFT_1581 0.61 -0.4 1,641,863 + B158DRAFT_1581 0.61 -0.3 1,641,864 - B158DRAFT_1581 0.61 -1.5 1,641,864 - B158DRAFT_1581 0.61 -0.3 1,641,869 - B158DRAFT_1581 0.61 +1.0 1,641,930 - B158DRAFT_1581 0.65 +0.4 1,641,938 - B158DRAFT_1581 0.65 +0.0 1,641,946 - B158DRAFT_1581 0.65 -0.7 1,641,946 - B158DRAFT_1581 0.65 -0.6 1,641,981 + B158DRAFT_1581 0.67 -2.7 1,641,983 + B158DRAFT_1581 0.67 +0.2 1,641,983 + B158DRAFT_1581 0.67 +0.1 1,641,991 - B158DRAFT_1581 0.68 -2.0 1,642,026 - B158DRAFT_1581 0.70 -2.4 1,642,064 - B158DRAFT_1581 0.72 +1.2 1,642,097 + B158DRAFT_1581 0.73 -0.2 1,642,141 - B158DRAFT_1581 0.76 -0.7 1,642,227 + B158DRAFT_1581 0.80 -0.2 1,642,277 - B158DRAFT_1581 0.83 -0.7 1,642,308 + B158DRAFT_1581 0.85 -0.6 1,642,477 + -0.8 1,642,478 + -0.0 1,642,478 + +1.7 1,642,479 - -1.0 1,642,486 - -0.1 1,642,496 + +1.3 1,642,496 + +0.4 1,642,504 + -1.3 1,642,504 - +0.5 1,642,504 - -0.0 1,642,506 + -1.1 1,642,511 + -0.5 1,642,511 + -3.5 1,642,511 + -0.1 1,642,521 + +0.2 1,642,546 - +0.2 1,642,548 + +1.8 1,642,567 + -0.8 1,642,588 + -0.4 1,642,606 - +0.1 1,642,606 - -0.7 1,642,641 + +0.3 1,642,654 + -0.6 1,642,683 + -0.4 1,642,696 - -1.0 1,642,696 - -1.3 1,642,727 + -0.2 1,642,727 + -1.8 1,642,727 + +0.4 1,642,727 + -0.7 1,642,735 - +0.3 1,642,737 + +0.2 1,642,737 + +0.3 1,642,807 + B158DRAFT_1582 0.14 +0.1 1,642,807 + B158DRAFT_1582 0.14 -0.8 1,642,807 + B158DRAFT_1582 0.14 +0.1 1,642,814 - B158DRAFT_1582 0.15 -0.5 1,642,815 - B158DRAFT_1582 0.15 +1.1 1,642,815 - B158DRAFT_1582 0.15 +0.9 1,642,815 - B158DRAFT_1582 0.15 -0.4 1,642,820 + B158DRAFT_1582 0.16 -0.3 1,642,826 + B158DRAFT_1582 0.17 -0.4 1,642,838 + B158DRAFT_1582 0.19 -2.0 1,642,846 - B158DRAFT_1582 0.20 +0.7 1,642,860 - B158DRAFT_1582 0.22 +0.9 1,642,863 + B158DRAFT_1582 0.22 -0.1 1,642,863 + B158DRAFT_1582 0.22 +0.6 1,642,871 - B158DRAFT_1582 0.23 -0.5 1,642,871 - B158DRAFT_1582 0.23 -0.1 1,642,912 - B158DRAFT_1582 0.29 -0.2 1,642,973 - B158DRAFT_1582 0.38 +0.1 1,643,000 + B158DRAFT_1582 0.42 -0.1 1,643,000 + B158DRAFT_1582 0.42 +0.4 1,643,000 + B158DRAFT_1582 0.42 -1.1 1,643,000 + B158DRAFT_1582 0.42 -0.6 1,643,008 - B158DRAFT_1582 0.43 -0.5 1,643,008 - B158DRAFT_1582 0.43 +0.5 1,643,047 - B158DRAFT_1582 0.49 -0.8 1,643,063 + B158DRAFT_1582 0.51 +0.1 1,643,072 - B158DRAFT_1582 0.52 -0.1 1,643,074 + B158DRAFT_1582 0.53 -0.5 1,643,074 + B158DRAFT_1582 0.53 +0.1 1,643,082 - B158DRAFT_1582 0.54 -0.5 1,643,177 + B158DRAFT_1582 0.67 +0.2 1,643,177 + B158DRAFT_1582 0.67 -0.3 1,643,185 - B158DRAFT_1582 0.69 -0.1 1,643,196 + B158DRAFT_1582 0.70 +0.9 1,643,240 - B158DRAFT_1582 0.76 -0.5 1,643,274 + B158DRAFT_1582 0.81 -0.7 1,643,277 - B158DRAFT_1582 0.82 -0.5 1,643,277 - B158DRAFT_1582 0.82 +0.3 1,643,282 - B158DRAFT_1582 0.82 +0.1 1,643,282 - B158DRAFT_1582 0.82 -0.6 1,643,335 - -1.3 1,643,353 - -0.3 1,643,365 + -0.6 1,643,373 + -0.2 1,643,445 + +0.5 1,643,445 + +0.2 1,643,453 - -0.0 1,643,453 - -0.3 1,643,481 - +0.1 1,643,486 + +0.2 1,643,501 + -0.2 1,643,509 - +0.0 1,643,569 - +0.2 1,643,569 - +0.1 1,643,569 - +0.4 1,643,602 - +0.3 1,643,616 - -0.3 1,643,670 + B158DRAFT_1583 0.12 +0.3 1,643,670 + B158DRAFT_1583 0.12 -0.2 1,643,670 + B158DRAFT_1583 0.12 -0.2 1,643,670 + B158DRAFT_1583 0.12 -0.2 1,643,678 - B158DRAFT_1583 0.13 -0.1 1,643,678 - B158DRAFT_1583 0.13 -1.1 1,643,678 - B158DRAFT_1583 0.13 -1.3 1,643,678 - B158DRAFT_1583 0.13 +0.1 1,643,678 - B158DRAFT_1583 0.13 +0.0 1,643,678 - B158DRAFT_1583 0.13 -1.0 1,643,749 + B158DRAFT_1583 0.18 -0.7 1,643,779 - B158DRAFT_1583 0.20 -0.7 1,643,781 + B158DRAFT_1583 0.20 +0.1 1,643,783 + B158DRAFT_1583 0.20 -0.5 1,643,783 + B158DRAFT_1583 0.20 -0.3 1,643,785 - B158DRAFT_1583 0.20 +1.5 1,643,800 + B158DRAFT_1583 0.21 -1.9 1,643,802 + B158DRAFT_1583 0.21 +0.4 1,643,802 + B158DRAFT_1583 0.21 -0.4 1,643,808 - B158DRAFT_1583 0.22 -0.7 1,643,810 - B158DRAFT_1583 0.22 -0.4 1,643,843 + B158DRAFT_1583 0.24 -0.1 1,643,893 - B158DRAFT_1583 0.27 +0.3 1,643,895 + B158DRAFT_1583 0.27 -1.7 1,643,895 + B158DRAFT_1583 0.27 +0.8 1,643,895 - B158DRAFT_1583 0.27 -0.6 1,643,903 - B158DRAFT_1583 0.28 +0.3 1,643,933 - B158DRAFT_1583 0.30 -2.7 1,643,938 - B158DRAFT_1583 0.30 -3.2 1,643,979 + B158DRAFT_1583 0.33 -1.5 1,644,007 + B158DRAFT_1583 0.35 -0.3 1,644,024 - B158DRAFT_1583 0.36 -0.7 1,644,033 - B158DRAFT_1583 0.37 -0.2 1,644,069 + B158DRAFT_1583 0.39 -0.6 1,644,070 + B158DRAFT_1583 0.39 -0.4 1,644,078 - B158DRAFT_1583 0.40 -0.7 1,644,080 - B158DRAFT_1583 0.40 -0.2 1,644,080 - B158DRAFT_1583 0.40 -0.4 1,644,088 - B158DRAFT_1583 0.41 +0.4 1,644,119 - B158DRAFT_1583 0.43 -0.0 1,644,130 - B158DRAFT_1583 0.43 +0.5 1,644,194 + B158DRAFT_1583 0.48 -0.4 1,644,225 - B158DRAFT_1583 0.50 -0.7 1,644,237 - B158DRAFT_1583 0.51 -0.0 1,644,255 + B158DRAFT_1583 0.52 -0.1 1,644,262 + B158DRAFT_1583 0.52 -0.0 1,644,262 + B158DRAFT_1583 0.52 -0.3 1,644,268 + B158DRAFT_1583 0.53 +1.3 1,644,270 - B158DRAFT_1583 0.53 -1.8 1,644,270 - B158DRAFT_1583 0.53 -1.0 1,644,270 - B158DRAFT_1583 0.53 +0.4 1,644,270 - B158DRAFT_1583 0.53 -0.1 1,644,295 - B158DRAFT_1583 0.55 -0.8
Or see this region's nucleotide sequence