Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0371

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0369 and B158DRAFT_0370 are separated by 20 nucleotidesB158DRAFT_0370 and B158DRAFT_0371 overlap by 4 nucleotidesB158DRAFT_0371 and B158DRAFT_0372 are separated by 30 nucleotides B158DRAFT_0369: B158DRAFT_0369 - LSU ribosomal protein L34P, at 374,630 to 374,764 _0369 B158DRAFT_0370: B158DRAFT_0370 - ribonuclease P protein component, eubacterial, at 374,785 to 375,168 _0370 B158DRAFT_0371: B158DRAFT_0371 - conserved hypothetical protein YidD, at 375,165 to 375,389 _0371 B158DRAFT_0372: B158DRAFT_0372 - membrane protein insertase, YidC/Oxa1 family, N-terminal domain, at 375,420 to 377,027 _0372 Position (kb) 375 376Strain fitness (log2 ratio) -1 0 1 2 3at 374.200 kb on + strandat 374.368 kb on + strandat 374.376 kb on - strandat 374.376 kb on - strandat 374.376 kb on - strandat 374.428 kb on + strandat 374.428 kb on + strandat 374.434 kb on + strandat 374.436 kb on - strandat 374.441 kb on - strandat 375.287 kb on + strand, within B158DRAFT_0371

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
374,200 + +0.5
374,368 + -1.1
374,376 - -0.7
374,376 - -0.6
374,376 - -0.5
374,428 + -1.1
374,428 + -0.4
374,434 + +3.2
374,436 - -0.3
374,441 - -0.3
375,287 + B158DRAFT_0371 0.54 +0.3

Or see this region's nucleotide sequence