Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2005

Experiment: m.b. Thallium(I) acetate 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2002 and B158DRAFT_2003 are separated by 14 nucleotidesB158DRAFT_2003 and B158DRAFT_2004 are separated by 25 nucleotidesB158DRAFT_2004 and B158DRAFT_2005 are separated by 140 nucleotidesB158DRAFT_2005 and B158DRAFT_2006 are separated by 23 nucleotidesB158DRAFT_2006 and B158DRAFT_2007 are separated by 50 nucleotidesB158DRAFT_2007 and B158DRAFT_2008 overlap by 4 nucleotides B158DRAFT_2002: B158DRAFT_2002 - ribosomal protein S6, at 136,988 to 137,386 _2002 B158DRAFT_2003: B158DRAFT_2003 - ribosomal protein S18, at 137,401 to 137,628 _2003 B158DRAFT_2004: B158DRAFT_2004 - LSU ribosomal protein L9P, at 137,654 to 138,109 _2004 B158DRAFT_2005: B158DRAFT_2005 - hypothetical protein, at 138,250 to 139,080 _2005 B158DRAFT_2006: B158DRAFT_2006 - Uncharacterized conserved protein, at 139,104 to 139,502 _2006 B158DRAFT_2007: B158DRAFT_2007 - hypothetical protein, at 139,553 to 139,975 _2007 B158DRAFT_2008: B158DRAFT_2008 - Uncharacterized protein conserved in bacteria, at 139,972 to 140,370 _2008 Position (kb) 138 139 140Strain fitness (log2 ratio) -2 -1 0 1 2at 137.729 kb on + strand, within B158DRAFT_2004at 137.760 kb on - strand, within B158DRAFT_2004at 137.800 kb on + strand, within B158DRAFT_2004at 137.846 kb on + strand, within B158DRAFT_2004at 137.846 kb on + strand, within B158DRAFT_2004at 137.846 kb on + strand, within B158DRAFT_2004at 137.854 kb on - strand, within B158DRAFT_2004at 137.854 kb on - strand, within B158DRAFT_2004at 137.864 kb on - strand, within B158DRAFT_2004at 137.896 kb on - strand, within B158DRAFT_2004at 137.934 kb on + strand, within B158DRAFT_2004at 137.971 kb on - strand, within B158DRAFT_2004at 138.112 kb on - strandat 138.120 kb on - strandat 138.215 kb on + strandat 138.345 kb on - strand, within B158DRAFT_2005at 138.381 kb on + strand, within B158DRAFT_2005at 138.422 kb on + strand, within B158DRAFT_2005at 138.441 kb on + strand, within B158DRAFT_2005at 138.529 kb on - strand, within B158DRAFT_2005at 138.536 kb on - strand, within B158DRAFT_2005at 138.579 kb on + strand, within B158DRAFT_2005at 138.579 kb on + strand, within B158DRAFT_2005at 138.579 kb on + strand, within B158DRAFT_2005at 138.579 kb on + strand, within B158DRAFT_2005at 138.579 kb on + strand, within B158DRAFT_2005at 138.587 kb on - strand, within B158DRAFT_2005at 138.587 kb on - strand, within B158DRAFT_2005at 138.587 kb on - strand, within B158DRAFT_2005at 138.597 kb on - strand, within B158DRAFT_2005at 138.615 kb on - strand, within B158DRAFT_2005at 138.629 kb on + strand, within B158DRAFT_2005at 138.629 kb on + strand, within B158DRAFT_2005at 138.637 kb on - strand, within B158DRAFT_2005at 138.724 kb on + strand, within B158DRAFT_2005at 138.724 kb on + strand, within B158DRAFT_2005at 138.807 kb on + strand, within B158DRAFT_2005at 138.807 kb on + strand, within B158DRAFT_2005at 138.815 kb on - strand, within B158DRAFT_2005at 138.815 kb on - strand, within B158DRAFT_2005at 138.826 kb on + strand, within B158DRAFT_2005at 138.838 kb on + strand, within B158DRAFT_2005at 138.953 kb on + strand, within B158DRAFT_2005at 138.953 kb on + strand, within B158DRAFT_2005at 138.958 kb on + strand, within B158DRAFT_2005at 138.958 kb on - strand, within B158DRAFT_2005at 138.961 kb on - strand, within B158DRAFT_2005at 138.961 kb on - strand, within B158DRAFT_2005at 138.961 kb on - strand, within B158DRAFT_2005at 138.978 kb on + strand, within B158DRAFT_2005at 138.986 kb on - strand, within B158DRAFT_2005at 138.986 kb on - strand, within B158DRAFT_2005at 139.040 kb on + strandat 139.168 kb on + strand, within B158DRAFT_2006at 139.207 kb on - strand, within B158DRAFT_2006at 139.215 kb on + strand, within B158DRAFT_2006at 139.223 kb on - strand, within B158DRAFT_2006at 139.257 kb on + strand, within B158DRAFT_2006at 139.350 kb on + strand, within B158DRAFT_2006at 139.350 kb on + strand, within B158DRAFT_2006at 139.358 kb on - strand, within B158DRAFT_2006at 139.374 kb on + strand, within B158DRAFT_2006at 139.384 kb on - strand, within B158DRAFT_2006at 139.384 kb on - strand, within B158DRAFT_2006at 139.661 kb on + strand, within B158DRAFT_2007at 139.673 kb on + strand, within B158DRAFT_2007at 139.673 kb on + strand, within B158DRAFT_2007at 139.673 kb on + strand, within B158DRAFT_2007at 139.681 kb on - strand, within B158DRAFT_2007at 139.681 kb on - strand, within B158DRAFT_2007at 139.681 kb on - strand, within B158DRAFT_2007at 139.681 kb on - strand, within B158DRAFT_2007at 139.681 kb on - strand, within B158DRAFT_2007at 139.681 kb on - strand, within B158DRAFT_2007at 139.681 kb on - strand, within B158DRAFT_2007at 139.683 kb on + strand, within B158DRAFT_2007at 139.683 kb on + strand, within B158DRAFT_2007at 139.683 kb on + strand, within B158DRAFT_2007at 139.683 kb on + strand, within B158DRAFT_2007at 139.683 kb on + strand, within B158DRAFT_2007at 139.683 kb on + strand, within B158DRAFT_2007at 139.683 kb on + strand, within B158DRAFT_2007at 139.683 kb on + strand, within B158DRAFT_2007at 139.688 kb on + strand, within B158DRAFT_2007at 139.688 kb on + strand, within B158DRAFT_2007at 139.688 kb on + strand, within B158DRAFT_2007at 139.688 kb on + strand, within B158DRAFT_2007at 139.688 kb on + strand, within B158DRAFT_2007at 139.688 kb on + strand, within B158DRAFT_2007at 139.691 kb on - strand, within B158DRAFT_2007at 139.696 kb on - strand, within B158DRAFT_2007at 139.696 kb on - strand, within B158DRAFT_2007at 139.696 kb on - strand, within B158DRAFT_2007at 139.696 kb on - strand, within B158DRAFT_2007at 139.696 kb on - strand, within B158DRAFT_2007at 139.696 kb on - strand, within B158DRAFT_2007at 139.696 kb on - strand, within B158DRAFT_2007at 139.753 kb on - strand, within B158DRAFT_2007at 139.827 kb on + strand, within B158DRAFT_2007at 139.827 kb on + strand, within B158DRAFT_2007at 139.827 kb on + strand, within B158DRAFT_2007at 139.827 kb on + strand, within B158DRAFT_2007at 139.835 kb on - strand, within B158DRAFT_2007at 139.835 kb on - strand, within B158DRAFT_2007at 139.884 kb on + strand, within B158DRAFT_2007at 139.884 kb on + strand, within B158DRAFT_2007at 139.892 kb on - strand, within B158DRAFT_2007at 139.898 kb on + strand, within B158DRAFT_2007at 139.912 kb on - strand, within B158DRAFT_2007at 140.007 kb on - strandat 140.014 kb on + strand, within B158DRAFT_2008at 140.020 kb on - strand, within B158DRAFT_2008at 140.044 kb on + strand, within B158DRAFT_2008at 140.052 kb on - strand, within B158DRAFT_2008

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0078125 mg/ml
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137,729 + B158DRAFT_2004 0.16 +0.7
137,760 - B158DRAFT_2004 0.23 -0.2
137,800 + B158DRAFT_2004 0.32 +0.1
137,846 + B158DRAFT_2004 0.42 -0.3
137,846 + B158DRAFT_2004 0.42 -0.6
137,846 + B158DRAFT_2004 0.42 +0.4
137,854 - B158DRAFT_2004 0.44 -0.9
137,854 - B158DRAFT_2004 0.44 -0.8
137,864 - B158DRAFT_2004 0.46 +0.4
137,896 - B158DRAFT_2004 0.53 +0.1
137,934 + B158DRAFT_2004 0.61 -0.2
137,971 - B158DRAFT_2004 0.70 +0.8
138,112 - -0.3
138,120 - +0.0
138,215 + -0.5
138,345 - B158DRAFT_2005 0.11 +0.1
138,381 + B158DRAFT_2005 0.16 +0.6
138,422 + B158DRAFT_2005 0.21 -0.2
138,441 + B158DRAFT_2005 0.23 -0.2
138,529 - B158DRAFT_2005 0.34 -0.3
138,536 - B158DRAFT_2005 0.34 -0.9
138,579 + B158DRAFT_2005 0.40 +1.4
138,579 + B158DRAFT_2005 0.40 +0.3
138,579 + B158DRAFT_2005 0.40 +0.4
138,579 + B158DRAFT_2005 0.40 +0.6
138,579 + B158DRAFT_2005 0.40 +1.9
138,587 - B158DRAFT_2005 0.41 -1.0
138,587 - B158DRAFT_2005 0.41 -0.1
138,587 - B158DRAFT_2005 0.41 +0.5
138,597 - B158DRAFT_2005 0.42 +0.3
138,615 - B158DRAFT_2005 0.44 +0.5
138,629 + B158DRAFT_2005 0.46 +0.5
138,629 + B158DRAFT_2005 0.46 -0.4
138,637 - B158DRAFT_2005 0.47 -1.4
138,724 + B158DRAFT_2005 0.57 -0.5
138,724 + B158DRAFT_2005 0.57 +0.2
138,807 + B158DRAFT_2005 0.67 -1.0
138,807 + B158DRAFT_2005 0.67 +0.4
138,815 - B158DRAFT_2005 0.68 +0.2
138,815 - B158DRAFT_2005 0.68 +1.1
138,826 + B158DRAFT_2005 0.69 +0.4
138,838 + B158DRAFT_2005 0.71 +0.6
138,953 + B158DRAFT_2005 0.85 +0.4
138,953 + B158DRAFT_2005 0.85 +0.9
138,958 + B158DRAFT_2005 0.85 -0.5
138,958 - B158DRAFT_2005 0.85 -0.8
138,961 - B158DRAFT_2005 0.86 +0.2
138,961 - B158DRAFT_2005 0.86 +1.0
138,961 - B158DRAFT_2005 0.86 -2.2
138,978 + B158DRAFT_2005 0.88 -0.6
138,986 - B158DRAFT_2005 0.89 -2.1
138,986 - B158DRAFT_2005 0.89 +0.3
139,040 + +0.2
139,168 + B158DRAFT_2006 0.16 -0.3
139,207 - B158DRAFT_2006 0.26 -0.7
139,215 + B158DRAFT_2006 0.28 +0.6
139,223 - B158DRAFT_2006 0.30 -0.8
139,257 + B158DRAFT_2006 0.38 +0.4
139,350 + B158DRAFT_2006 0.62 -0.6
139,350 + B158DRAFT_2006 0.62 +0.2
139,358 - B158DRAFT_2006 0.64 +0.2
139,374 + B158DRAFT_2006 0.68 +0.6
139,384 - B158DRAFT_2006 0.70 +0.9
139,384 - B158DRAFT_2006 0.70 +0.5
139,661 + B158DRAFT_2007 0.26 -0.5
139,673 + B158DRAFT_2007 0.28 -1.0
139,673 + B158DRAFT_2007 0.28 +0.4
139,673 + B158DRAFT_2007 0.28 -0.3
139,681 - B158DRAFT_2007 0.30 -0.2
139,681 - B158DRAFT_2007 0.30 -0.7
139,681 - B158DRAFT_2007 0.30 +0.9
139,681 - B158DRAFT_2007 0.30 -0.9
139,681 - B158DRAFT_2007 0.30 -0.6
139,681 - B158DRAFT_2007 0.30 +0.0
139,681 - B158DRAFT_2007 0.30 -0.3
139,683 + B158DRAFT_2007 0.31 -1.0
139,683 + B158DRAFT_2007 0.31 -2.6
139,683 + B158DRAFT_2007 0.31 +0.0
139,683 + B158DRAFT_2007 0.31 -1.3
139,683 + B158DRAFT_2007 0.31 -0.4
139,683 + B158DRAFT_2007 0.31 +0.5
139,683 + B158DRAFT_2007 0.31 -1.0
139,683 + B158DRAFT_2007 0.31 -0.5
139,688 + B158DRAFT_2007 0.32 -1.5
139,688 + B158DRAFT_2007 0.32 -0.5
139,688 + B158DRAFT_2007 0.32 -0.0
139,688 + B158DRAFT_2007 0.32 -0.0
139,688 + B158DRAFT_2007 0.32 -0.1
139,688 + B158DRAFT_2007 0.32 -0.8
139,691 - B158DRAFT_2007 0.33 -0.7
139,696 - B158DRAFT_2007 0.34 -1.4
139,696 - B158DRAFT_2007 0.34 +0.2
139,696 - B158DRAFT_2007 0.34 -0.1
139,696 - B158DRAFT_2007 0.34 +0.4
139,696 - B158DRAFT_2007 0.34 -0.8
139,696 - B158DRAFT_2007 0.34 +0.2
139,696 - B158DRAFT_2007 0.34 -0.6
139,753 - B158DRAFT_2007 0.47 -1.0
139,827 + B158DRAFT_2007 0.65 -0.4
139,827 + B158DRAFT_2007 0.65 +0.1
139,827 + B158DRAFT_2007 0.65 +1.1
139,827 + B158DRAFT_2007 0.65 -0.4
139,835 - B158DRAFT_2007 0.67 -0.6
139,835 - B158DRAFT_2007 0.67 +0.5
139,884 + B158DRAFT_2007 0.78 -0.2
139,884 + B158DRAFT_2007 0.78 -0.0
139,892 - B158DRAFT_2007 0.80 -0.4
139,898 + B158DRAFT_2007 0.82 -0.5
139,912 - B158DRAFT_2007 0.85 -0.6
140,007 - -0.4
140,014 + B158DRAFT_2008 0.11 +0.7
140,020 - B158DRAFT_2008 0.12 -0.7
140,044 + B158DRAFT_2008 0.18 +0.5
140,052 - B158DRAFT_2008 0.20 +0.2

Or see this region's nucleotide sequence