Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2055

Experiment: m.b. Paraquat dichloride 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2054 and B158DRAFT_2055 are separated by 516 nucleotidesB158DRAFT_2055 and B158DRAFT_2056 are separated by 154 nucleotides B158DRAFT_2054: B158DRAFT_2054 - ribosomal protein L25, Ctc-form, at 187,754 to 188,431 _2054 B158DRAFT_2055: B158DRAFT_2055 - DNA-binding winged-HTH domains, at 188,948 to 190,231 _2055 B158DRAFT_2056: B158DRAFT_2056 - Periplasmic protease, at 190,386 to 191,882 _2056 Position (kb) 188 189 190 191Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 187.957 kb on - strand, within B158DRAFT_2054at 187.969 kb on + strand, within B158DRAFT_2054at 187.969 kb on + strand, within B158DRAFT_2054at 188.037 kb on - strand, within B158DRAFT_2054at 188.102 kb on + strand, within B158DRAFT_2054at 188.102 kb on + strand, within B158DRAFT_2054at 188.693 kb on + strandat 188.693 kb on + strandat 188.693 kb on + strandat 188.693 kb on + strandat 188.701 kb on - strandat 188.701 kb on - strandat 188.701 kb on - strandat 188.701 kb on - strandat 188.701 kb on - strandat 188.701 kb on - strandat 188.758 kb on - strandat 188.796 kb on - strandat 188.893 kb on - strandat 188.933 kb on - strandat 188.937 kb on - strandat 188.990 kb on - strandat 189.016 kb on + strandat 189.022 kb on - strandat 189.024 kb on + strandat 189.024 kb on + strandat 189.024 kb on - strandat 189.032 kb on - strandat 189.039 kb on + strandat 189.047 kb on - strandat 189.076 kb on + strandat 189.083 kb on + strand, within B158DRAFT_2055at 189.091 kb on - strand, within B158DRAFT_2055at 189.091 kb on - strand, within B158DRAFT_2055at 189.091 kb on - strand, within B158DRAFT_2055at 189.091 kb on - strand, within B158DRAFT_2055at 189.091 kb on - strand, within B158DRAFT_2055at 189.091 kb on - strand, within B158DRAFT_2055at 189.227 kb on + strand, within B158DRAFT_2055at 189.264 kb on + strand, within B158DRAFT_2055at 189.264 kb on + strand, within B158DRAFT_2055at 189.272 kb on - strand, within B158DRAFT_2055at 189.272 kb on - strand, within B158DRAFT_2055at 189.324 kb on - strand, within B158DRAFT_2055at 189.324 kb on - strand, within B158DRAFT_2055at 189.375 kb on + strand, within B158DRAFT_2055at 189.375 kb on + strand, within B158DRAFT_2055at 189.375 kb on + strand, within B158DRAFT_2055at 189.375 kb on + strand, within B158DRAFT_2055at 189.375 kb on + strand, within B158DRAFT_2055at 189.375 kb on + strand, within B158DRAFT_2055at 189.380 kb on + strand, within B158DRAFT_2055at 189.383 kb on - strand, within B158DRAFT_2055at 189.383 kb on - strand, within B158DRAFT_2055at 189.383 kb on - strand, within B158DRAFT_2055at 189.383 kb on - strand, within B158DRAFT_2055at 189.383 kb on - strand, within B158DRAFT_2055at 189.400 kb on + strand, within B158DRAFT_2055at 189.410 kb on - strand, within B158DRAFT_2055at 189.410 kb on - strand, within B158DRAFT_2055at 189.410 kb on - strand, within B158DRAFT_2055at 189.448 kb on + strand, within B158DRAFT_2055at 189.453 kb on + strand, within B158DRAFT_2055at 189.453 kb on + strand, within B158DRAFT_2055at 189.453 kb on + strand, within B158DRAFT_2055at 189.454 kb on - strand, within B158DRAFT_2055at 189.461 kb on - strand, within B158DRAFT_2055at 189.461 kb on - strand, within B158DRAFT_2055at 189.461 kb on - strand, within B158DRAFT_2055at 189.461 kb on - strand, within B158DRAFT_2055at 189.461 kb on - strand, within B158DRAFT_2055at 189.461 kb on - strand, within B158DRAFT_2055at 189.461 kb on - strand, within B158DRAFT_2055at 189.461 kb on - strand, within B158DRAFT_2055at 189.461 kb on - strand, within B158DRAFT_2055at 189.463 kb on + strand, within B158DRAFT_2055at 189.522 kb on + strand, within B158DRAFT_2055at 189.540 kb on - strand, within B158DRAFT_2055at 189.545 kb on - strand, within B158DRAFT_2055at 189.558 kb on - strand, within B158DRAFT_2055at 189.560 kb on + strand, within B158DRAFT_2055at 189.560 kb on + strand, within B158DRAFT_2055at 189.560 kb on + strand, within B158DRAFT_2055at 189.568 kb on - strand, within B158DRAFT_2055at 189.568 kb on - strand, within B158DRAFT_2055at 189.568 kb on - strand, within B158DRAFT_2055at 189.582 kb on + strand, within B158DRAFT_2055at 189.582 kb on + strand, within B158DRAFT_2055at 189.582 kb on + strand, within B158DRAFT_2055at 189.582 kb on + strand, within B158DRAFT_2055at 189.587 kb on + strand, within B158DRAFT_2055at 189.587 kb on + strand, within B158DRAFT_2055at 189.590 kb on - strand, within B158DRAFT_2055at 189.592 kb on + strand, within B158DRAFT_2055at 189.592 kb on + strand, within B158DRAFT_2055at 189.592 kb on + strand, within B158DRAFT_2055at 189.592 kb on + strand, within B158DRAFT_2055at 189.595 kb on - strand, within B158DRAFT_2055at 189.595 kb on - strand, within B158DRAFT_2055at 189.595 kb on - strand, within B158DRAFT_2055at 189.595 kb on - strand, within B158DRAFT_2055at 189.600 kb on - strand, within B158DRAFT_2055at 189.600 kb on - strand, within B158DRAFT_2055at 189.600 kb on - strand, within B158DRAFT_2055at 189.600 kb on - strand, within B158DRAFT_2055at 189.600 kb on - strand, within B158DRAFT_2055at 189.600 kb on - strand, within B158DRAFT_2055at 189.600 kb on - strand, within B158DRAFT_2055at 189.607 kb on + strand, within B158DRAFT_2055at 189.654 kb on - strand, within B158DRAFT_2055at 189.674 kb on + strand, within B158DRAFT_2055at 189.721 kb on + strand, within B158DRAFT_2055at 189.729 kb on - strand, within B158DRAFT_2055at 189.927 kb on + strand, within B158DRAFT_2055at 189.927 kb on + strand, within B158DRAFT_2055at 189.936 kb on - strand, within B158DRAFT_2055at 189.953 kb on - strand, within B158DRAFT_2055at 189.989 kb on + strand, within B158DRAFT_2055at 190.017 kb on + strand, within B158DRAFT_2055at 190.022 kb on + strand, within B158DRAFT_2055at 190.025 kb on - strand, within B158DRAFT_2055at 190.030 kb on - strand, within B158DRAFT_2055at 190.052 kb on + strand, within B158DRAFT_2055at 190.052 kb on + strand, within B158DRAFT_2055at 190.052 kb on + strand, within B158DRAFT_2055at 190.052 kb on + strand, within B158DRAFT_2055at 190.052 kb on + strand, within B158DRAFT_2055at 190.060 kb on - strand, within B158DRAFT_2055at 190.060 kb on - strand, within B158DRAFT_2055at 190.196 kb on - strandat 190.223 kb on - strandat 190.309 kb on + strandat 190.318 kb on + strandat 190.346 kb on - strandat 190.349 kb on + strandat 190.366 kb on - strandat 190.380 kb on + strandat 190.380 kb on + strandat 190.388 kb on - strandat 190.395 kb on + strandat 190.436 kb on - strandat 190.518 kb on + strandat 190.524 kb on - strandat 190.532 kb on + strandat 190.543 kb on + strand, within B158DRAFT_2056at 190.555 kb on - strand, within B158DRAFT_2056at 190.610 kb on - strand, within B158DRAFT_2056at 190.633 kb on - strand, within B158DRAFT_2056at 190.637 kb on + strand, within B158DRAFT_2056at 190.645 kb on - strand, within B158DRAFT_2056at 190.645 kb on - strand, within B158DRAFT_2056at 190.720 kb on - strand, within B158DRAFT_2056at 190.720 kb on - strand, within B158DRAFT_2056at 190.750 kb on + strand, within B158DRAFT_2056at 190.758 kb on - strand, within B158DRAFT_2056at 190.768 kb on + strand, within B158DRAFT_2056at 190.779 kb on + strand, within B158DRAFT_2056at 190.820 kb on + strand, within B158DRAFT_2056at 190.820 kb on + strand, within B158DRAFT_2056at 190.828 kb on - strand, within B158DRAFT_2056at 190.829 kb on + strand, within B158DRAFT_2056at 190.839 kb on + strand, within B158DRAFT_2056at 190.843 kb on - strand, within B158DRAFT_2056at 190.885 kb on - strand, within B158DRAFT_2056at 190.902 kb on + strand, within B158DRAFT_2056at 190.910 kb on - strand, within B158DRAFT_2056at 190.910 kb on - strand, within B158DRAFT_2056at 190.911 kb on + strand, within B158DRAFT_2056at 191.005 kb on + strand, within B158DRAFT_2056at 191.086 kb on + strand, within B158DRAFT_2056at 191.086 kb on + strand, within B158DRAFT_2056at 191.094 kb on - strand, within B158DRAFT_2056at 191.159 kb on + strand, within B158DRAFT_2056at 191.159 kb on + strand, within B158DRAFT_2056at 191.167 kb on - strand, within B158DRAFT_2056at 191.167 kb on - strand, within B158DRAFT_2056at 191.167 kb on - strand, within B158DRAFT_2056at 191.213 kb on - strand, within B158DRAFT_2056at 191.213 kb on - strand, within B158DRAFT_2056

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.00390625 mg/ml
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187,957 - B158DRAFT_2054 0.30 -0.4
187,969 + B158DRAFT_2054 0.32 +5.2
187,969 + B158DRAFT_2054 0.32 +1.4
188,037 - B158DRAFT_2054 0.42 +3.5
188,102 + B158DRAFT_2054 0.51 +2.5
188,102 + B158DRAFT_2054 0.51 +1.8
188,693 + -0.9
188,693 + +1.0
188,693 + -0.5
188,693 + -0.4
188,701 - -0.2
188,701 - +0.1
188,701 - -1.0
188,701 - -0.7
188,701 - -0.2
188,701 - -0.1
188,758 - +0.4
188,796 - +2.6
188,893 - +0.1
188,933 - +0.1
188,937 - -0.4
188,990 - -0.0
189,016 + -0.2
189,022 - -0.2
189,024 + +0.7
189,024 + -0.4
189,024 - -0.1
189,032 - +0.4
189,039 + -0.5
189,047 - +0.7
189,076 + +3.3
189,083 + B158DRAFT_2055 0.11 +1.3
189,091 - B158DRAFT_2055 0.11 +0.7
189,091 - B158DRAFT_2055 0.11 -0.1
189,091 - B158DRAFT_2055 0.11 -1.0
189,091 - B158DRAFT_2055 0.11 -0.3
189,091 - B158DRAFT_2055 0.11 +0.2
189,091 - B158DRAFT_2055 0.11 +4.5
189,227 + B158DRAFT_2055 0.22 -0.2
189,264 + B158DRAFT_2055 0.25 +0.4
189,264 + B158DRAFT_2055 0.25 -0.1
189,272 - B158DRAFT_2055 0.25 -0.7
189,272 - B158DRAFT_2055 0.25 -1.4
189,324 - B158DRAFT_2055 0.29 +2.3
189,324 - B158DRAFT_2055 0.29 -0.9
189,375 + B158DRAFT_2055 0.33 +0.5
189,375 + B158DRAFT_2055 0.33 +0.2
189,375 + B158DRAFT_2055 0.33 +0.3
189,375 + B158DRAFT_2055 0.33 -0.0
189,375 + B158DRAFT_2055 0.33 -0.2
189,375 + B158DRAFT_2055 0.33 -2.5
189,380 + B158DRAFT_2055 0.34 +0.1
189,383 - B158DRAFT_2055 0.34 -0.1
189,383 - B158DRAFT_2055 0.34 -0.1
189,383 - B158DRAFT_2055 0.34 +0.3
189,383 - B158DRAFT_2055 0.34 -1.4
189,383 - B158DRAFT_2055 0.34 -0.5
189,400 + B158DRAFT_2055 0.35 +0.9
189,410 - B158DRAFT_2055 0.36 -0.3
189,410 - B158DRAFT_2055 0.36 -0.6
189,410 - B158DRAFT_2055 0.36 +0.6
189,448 + B158DRAFT_2055 0.39 -0.3
189,453 + B158DRAFT_2055 0.39 +0.1
189,453 + B158DRAFT_2055 0.39 -0.2
189,453 + B158DRAFT_2055 0.39 +0.3
189,454 - B158DRAFT_2055 0.39 -1.1
189,461 - B158DRAFT_2055 0.40 +1.0
189,461 - B158DRAFT_2055 0.40 -0.2
189,461 - B158DRAFT_2055 0.40 +0.4
189,461 - B158DRAFT_2055 0.40 +1.2
189,461 - B158DRAFT_2055 0.40 +0.1
189,461 - B158DRAFT_2055 0.40 -0.2
189,461 - B158DRAFT_2055 0.40 -0.4
189,461 - B158DRAFT_2055 0.40 -0.1
189,461 - B158DRAFT_2055 0.40 -0.8
189,463 + B158DRAFT_2055 0.40 +0.3
189,522 + B158DRAFT_2055 0.45 +1.0
189,540 - B158DRAFT_2055 0.46 -0.0
189,545 - B158DRAFT_2055 0.46 +0.7
189,558 - B158DRAFT_2055 0.48 -1.1
189,560 + B158DRAFT_2055 0.48 -0.6
189,560 + B158DRAFT_2055 0.48 -0.6
189,560 + B158DRAFT_2055 0.48 -1.1
189,568 - B158DRAFT_2055 0.48 -0.4
189,568 - B158DRAFT_2055 0.48 -0.1
189,568 - B158DRAFT_2055 0.48 +0.0
189,582 + B158DRAFT_2055 0.49 -1.3
189,582 + B158DRAFT_2055 0.49 -0.9
189,582 + B158DRAFT_2055 0.49 -0.2
189,582 + B158DRAFT_2055 0.49 -0.6
189,587 + B158DRAFT_2055 0.50 -0.4
189,587 + B158DRAFT_2055 0.50 +0.0
189,590 - B158DRAFT_2055 0.50 +0.4
189,592 + B158DRAFT_2055 0.50 +1.2
189,592 + B158DRAFT_2055 0.50 +0.1
189,592 + B158DRAFT_2055 0.50 +0.0
189,592 + B158DRAFT_2055 0.50 +0.7
189,595 - B158DRAFT_2055 0.50 -0.6
189,595 - B158DRAFT_2055 0.50 -0.9
189,595 - B158DRAFT_2055 0.50 -0.2
189,595 - B158DRAFT_2055 0.50 +0.2
189,600 - B158DRAFT_2055 0.51 +0.1
189,600 - B158DRAFT_2055 0.51 +0.6
189,600 - B158DRAFT_2055 0.51 +0.1
189,600 - B158DRAFT_2055 0.51 -0.1
189,600 - B158DRAFT_2055 0.51 -0.6
189,600 - B158DRAFT_2055 0.51 +3.4
189,600 - B158DRAFT_2055 0.51 -0.7
189,607 + B158DRAFT_2055 0.51 +0.5
189,654 - B158DRAFT_2055 0.55 +0.3
189,674 + B158DRAFT_2055 0.57 -0.1
189,721 + B158DRAFT_2055 0.60 -0.0
189,729 - B158DRAFT_2055 0.61 -0.1
189,927 + B158DRAFT_2055 0.76 -1.0
189,927 + B158DRAFT_2055 0.76 +0.6
189,936 - B158DRAFT_2055 0.77 -0.2
189,953 - B158DRAFT_2055 0.78 +0.1
189,989 + B158DRAFT_2055 0.81 -0.5
190,017 + B158DRAFT_2055 0.83 -1.0
190,022 + B158DRAFT_2055 0.84 -0.6
190,025 - B158DRAFT_2055 0.84 -0.8
190,030 - B158DRAFT_2055 0.84 +1.3
190,052 + B158DRAFT_2055 0.86 -1.1
190,052 + B158DRAFT_2055 0.86 +0.4
190,052 + B158DRAFT_2055 0.86 +4.0
190,052 + B158DRAFT_2055 0.86 +0.5
190,052 + B158DRAFT_2055 0.86 -0.2
190,060 - B158DRAFT_2055 0.87 +0.7
190,060 - B158DRAFT_2055 0.87 +0.2
190,196 - -0.2
190,223 - -0.3
190,309 + -1.3
190,318 + +0.7
190,346 - +0.6
190,349 + -0.3
190,366 - -0.7
190,380 + +0.7
190,380 + -0.2
190,388 - +0.5
190,395 + +0.2
190,436 - -0.7
190,518 + -0.3
190,524 - -1.2
190,532 + -1.0
190,543 + B158DRAFT_2056 0.10 -0.6
190,555 - B158DRAFT_2056 0.11 +1.7
190,610 - B158DRAFT_2056 0.15 -1.0
190,633 - B158DRAFT_2056 0.16 -1.2
190,637 + B158DRAFT_2056 0.17 -0.2
190,645 - B158DRAFT_2056 0.17 +0.3
190,645 - B158DRAFT_2056 0.17 +0.0
190,720 - B158DRAFT_2056 0.22 +0.5
190,720 - B158DRAFT_2056 0.22 -0.6
190,750 + B158DRAFT_2056 0.24 -0.8
190,758 - B158DRAFT_2056 0.25 -0.4
190,768 + B158DRAFT_2056 0.26 +1.5
190,779 + B158DRAFT_2056 0.26 -0.1
190,820 + B158DRAFT_2056 0.29 +0.7
190,820 + B158DRAFT_2056 0.29 -1.2
190,828 - B158DRAFT_2056 0.30 -0.7
190,829 + B158DRAFT_2056 0.30 -0.6
190,839 + B158DRAFT_2056 0.30 -0.6
190,843 - B158DRAFT_2056 0.31 -0.5
190,885 - B158DRAFT_2056 0.33 -0.1
190,902 + B158DRAFT_2056 0.34 -0.5
190,910 - B158DRAFT_2056 0.35 -0.9
190,910 - B158DRAFT_2056 0.35 +0.9
190,911 + B158DRAFT_2056 0.35 +0.1
191,005 + B158DRAFT_2056 0.41 -0.3
191,086 + B158DRAFT_2056 0.47 +0.4
191,086 + B158DRAFT_2056 0.47 +0.2
191,094 - B158DRAFT_2056 0.47 +1.1
191,159 + B158DRAFT_2056 0.52 -0.7
191,159 + B158DRAFT_2056 0.52 +0.1
191,167 - B158DRAFT_2056 0.52 -0.3
191,167 - B158DRAFT_2056 0.52 -0.1
191,167 - B158DRAFT_2056 0.52 +0.5
191,213 - B158DRAFT_2056 0.55 +0.0
191,213 - B158DRAFT_2056 0.55 +0.3

Or see this region's nucleotide sequence