Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1799

Experiment: m.b. Paraquat dichloride 0.00390625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1798 and B158DRAFT_1799 are separated by 125 nucleotidesB158DRAFT_1799 and B158DRAFT_1800 are separated by 188 nucleotides B158DRAFT_1798: B158DRAFT_1798 - diguanylate cyclase (GGDEF) domain, at 1,893,101 to 1,895,113 _1798 B158DRAFT_1799: B158DRAFT_1799 - hypothetical protein, at 1,895,239 to 1,896,567 _1799 B158DRAFT_1800: B158DRAFT_1800 - transcription-repair coupling factor, at 1,896,756 to 1,900,178 _1800 Position (kb) 1895 1896 1897Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1894.242 kb on - strand, within B158DRAFT_1798at 1894.283 kb on + strand, within B158DRAFT_1798at 1894.284 kb on + strand, within B158DRAFT_1798at 1894.297 kb on + strand, within B158DRAFT_1798at 1894.323 kb on + strand, within B158DRAFT_1798at 1894.443 kb on + strand, within B158DRAFT_1798at 1894.445 kb on - strand, within B158DRAFT_1798at 1894.544 kb on - strand, within B158DRAFT_1798at 1894.640 kb on - strand, within B158DRAFT_1798at 1894.641 kb on - strand, within B158DRAFT_1798at 1894.647 kb on - strand, within B158DRAFT_1798at 1894.721 kb on - strand, within B158DRAFT_1798at 1894.948 kb on - strandat 1894.987 kb on + strandat 1894.995 kb on - strandat 1894.996 kb on + strandat 1895.004 kb on - strandat 1895.004 kb on - strandat 1895.004 kb on - strandat 1895.121 kb on + strandat 1895.263 kb on + strandat 1895.264 kb on - strandat 1895.284 kb on + strandat 1895.290 kb on + strandat 1895.290 kb on - strandat 1895.290 kb on - strandat 1895.290 kb on - strandat 1895.431 kb on + strand, within B158DRAFT_1799at 1895.443 kb on + strand, within B158DRAFT_1799at 1895.449 kb on + strand, within B158DRAFT_1799at 1895.449 kb on - strand, within B158DRAFT_1799at 1895.451 kb on - strand, within B158DRAFT_1799at 1895.457 kb on - strand, within B158DRAFT_1799at 1895.470 kb on + strand, within B158DRAFT_1799at 1895.470 kb on + strand, within B158DRAFT_1799at 1895.470 kb on + strand, within B158DRAFT_1799at 1895.480 kb on + strand, within B158DRAFT_1799at 1895.483 kb on - strand, within B158DRAFT_1799at 1895.522 kb on + strand, within B158DRAFT_1799at 1895.530 kb on - strand, within B158DRAFT_1799at 1895.530 kb on - strand, within B158DRAFT_1799at 1895.567 kb on + strand, within B158DRAFT_1799at 1895.575 kb on - strand, within B158DRAFT_1799at 1895.583 kb on - strand, within B158DRAFT_1799at 1895.626 kb on + strand, within B158DRAFT_1799at 1895.634 kb on - strand, within B158DRAFT_1799at 1895.634 kb on - strand, within B158DRAFT_1799at 1895.634 kb on - strand, within B158DRAFT_1799at 1895.776 kb on + strand, within B158DRAFT_1799at 1895.828 kb on - strand, within B158DRAFT_1799at 1895.863 kb on + strand, within B158DRAFT_1799at 1895.863 kb on + strand, within B158DRAFT_1799at 1895.863 kb on + strand, within B158DRAFT_1799at 1895.871 kb on - strand, within B158DRAFT_1799at 1895.871 kb on - strand, within B158DRAFT_1799at 1895.871 kb on - strand, within B158DRAFT_1799at 1895.873 kb on + strand, within B158DRAFT_1799at 1895.891 kb on - strand, within B158DRAFT_1799at 1895.901 kb on + strand, within B158DRAFT_1799at 1895.901 kb on + strand, within B158DRAFT_1799at 1895.971 kb on + strand, within B158DRAFT_1799at 1895.986 kb on - strand, within B158DRAFT_1799at 1895.994 kb on + strand, within B158DRAFT_1799at 1896.060 kb on - strand, within B158DRAFT_1799at 1896.071 kb on - strand, within B158DRAFT_1799at 1896.092 kb on - strand, within B158DRAFT_1799at 1896.092 kb on - strand, within B158DRAFT_1799at 1896.142 kb on - strand, within B158DRAFT_1799at 1896.150 kb on - strand, within B158DRAFT_1799at 1896.189 kb on + strand, within B158DRAFT_1799at 1896.189 kb on + strand, within B158DRAFT_1799at 1896.198 kb on - strand, within B158DRAFT_1799at 1896.199 kb on + strand, within B158DRAFT_1799at 1896.207 kb on - strand, within B158DRAFT_1799at 1896.233 kb on + strand, within B158DRAFT_1799at 1896.311 kb on - strand, within B158DRAFT_1799at 1896.331 kb on - strand, within B158DRAFT_1799at 1896.338 kb on + strand, within B158DRAFT_1799at 1896.338 kb on + strand, within B158DRAFT_1799at 1896.338 kb on + strand, within B158DRAFT_1799at 1896.344 kb on + strand, within B158DRAFT_1799at 1896.346 kb on - strand, within B158DRAFT_1799at 1896.346 kb on - strand, within B158DRAFT_1799at 1896.346 kb on - strand, within B158DRAFT_1799at 1896.346 kb on - strand, within B158DRAFT_1799at 1896.346 kb on - strand, within B158DRAFT_1799at 1896.346 kb on - strand, within B158DRAFT_1799at 1896.374 kb on - strand, within B158DRAFT_1799at 1896.445 kb on + strandat 1896.476 kb on + strandat 1896.476 kb on + strandat 1896.484 kb on - strandat 1896.484 kb on - strandat 1896.484 kb on - strandat 1896.486 kb on + strandat 1896.549 kb on + strandat 1896.593 kb on - strandat 1896.618 kb on - strandat 1896.645 kb on - strandat 1896.653 kb on - strandat 1896.706 kb on - strandat 1896.771 kb on + strandat 1896.822 kb on + strandat 1896.822 kb on + strandat 1896.830 kb on - strandat 1896.830 kb on - strandat 1896.830 kb on - strandat 1896.830 kb on - strandat 1896.830 kb on - strandat 1896.898 kb on + strandat 1896.898 kb on + strandat 1896.898 kb on + strandat 1896.898 kb on + strandat 1896.898 kb on + strandat 1896.906 kb on - strandat 1896.906 kb on - strandat 1896.906 kb on - strandat 1896.906 kb on - strandat 1896.906 kb on - strandat 1896.906 kb on - strandat 1896.906 kb on - strandat 1896.906 kb on - strandat 1897.014 kb on + strandat 1897.014 kb on + strandat 1897.022 kb on - strandat 1897.022 kb on - strandat 1897.071 kb on - strandat 1897.097 kb on - strandat 1897.114 kb on - strand, within B158DRAFT_1800at 1897.114 kb on - strand, within B158DRAFT_1800at 1897.125 kb on - strand, within B158DRAFT_1800at 1897.132 kb on - strand, within B158DRAFT_1800at 1897.132 kb on - strand, within B158DRAFT_1800at 1897.132 kb on - strand, within B158DRAFT_1800at 1897.142 kb on - strand, within B158DRAFT_1800at 1897.142 kb on - strand, within B158DRAFT_1800at 1897.185 kb on - strand, within B158DRAFT_1800at 1897.185 kb on - strand, within B158DRAFT_1800at 1897.254 kb on + strand, within B158DRAFT_1800at 1897.254 kb on + strand, within B158DRAFT_1800at 1897.388 kb on + strand, within B158DRAFT_1800at 1897.404 kb on + strand, within B158DRAFT_1800at 1897.425 kb on + strand, within B158DRAFT_1800at 1897.462 kb on - strand, within B158DRAFT_1800at 1897.506 kb on - strand, within B158DRAFT_1800at 1897.531 kb on + strand, within B158DRAFT_1800at 1897.531 kb on + strand, within B158DRAFT_1800at 1897.531 kb on + strand, within B158DRAFT_1800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.00390625 mg/ml
remove
1,894,242 - B158DRAFT_1798 0.57 -1.0
1,894,283 + B158DRAFT_1798 0.59 -0.2
1,894,284 + B158DRAFT_1798 0.59 -0.6
1,894,297 + B158DRAFT_1798 0.59 -0.6
1,894,323 + B158DRAFT_1798 0.61 -0.8
1,894,443 + B158DRAFT_1798 0.67 +0.0
1,894,445 - B158DRAFT_1798 0.67 -0.9
1,894,544 - B158DRAFT_1798 0.72 +0.7
1,894,640 - B158DRAFT_1798 0.76 +0.5
1,894,641 - B158DRAFT_1798 0.77 +0.6
1,894,647 - B158DRAFT_1798 0.77 -0.6
1,894,721 - B158DRAFT_1798 0.80 -1.1
1,894,948 - +0.1
1,894,987 + +0.1
1,894,995 - -0.0
1,894,996 + +0.0
1,895,004 - +0.9
1,895,004 - -0.2
1,895,004 - -0.8
1,895,121 + -0.7
1,895,263 + +0.2
1,895,264 - -1.0
1,895,284 + -0.1
1,895,290 + -0.7
1,895,290 - -0.8
1,895,290 - +0.7
1,895,290 - +0.5
1,895,431 + B158DRAFT_1799 0.14 -0.8
1,895,443 + B158DRAFT_1799 0.15 -0.4
1,895,449 + B158DRAFT_1799 0.16 +0.3
1,895,449 - B158DRAFT_1799 0.16 -0.4
1,895,451 - B158DRAFT_1799 0.16 +0.3
1,895,457 - B158DRAFT_1799 0.16 -0.2
1,895,470 + B158DRAFT_1799 0.17 +0.5
1,895,470 + B158DRAFT_1799 0.17 -0.7
1,895,470 + B158DRAFT_1799 0.17 +4.2
1,895,480 + B158DRAFT_1799 0.18 -0.9
1,895,483 - B158DRAFT_1799 0.18 -1.3
1,895,522 + B158DRAFT_1799 0.21 -0.7
1,895,530 - B158DRAFT_1799 0.22 -0.0
1,895,530 - B158DRAFT_1799 0.22 +0.4
1,895,567 + B158DRAFT_1799 0.25 -0.6
1,895,575 - B158DRAFT_1799 0.25 +0.1
1,895,583 - B158DRAFT_1799 0.26 -0.3
1,895,626 + B158DRAFT_1799 0.29 -1.1
1,895,634 - B158DRAFT_1799 0.30 +2.3
1,895,634 - B158DRAFT_1799 0.30 +0.0
1,895,634 - B158DRAFT_1799 0.30 -0.3
1,895,776 + B158DRAFT_1799 0.40 +5.9
1,895,828 - B158DRAFT_1799 0.44 -0.2
1,895,863 + B158DRAFT_1799 0.47 +0.4
1,895,863 + B158DRAFT_1799 0.47 -0.6
1,895,863 + B158DRAFT_1799 0.47 +0.2
1,895,871 - B158DRAFT_1799 0.48 -0.3
1,895,871 - B158DRAFT_1799 0.48 -0.3
1,895,871 - B158DRAFT_1799 0.48 +0.5
1,895,873 + B158DRAFT_1799 0.48 -0.8
1,895,891 - B158DRAFT_1799 0.49 -0.3
1,895,901 + B158DRAFT_1799 0.50 -0.5
1,895,901 + B158DRAFT_1799 0.50 -0.7
1,895,971 + B158DRAFT_1799 0.55 -0.5
1,895,986 - B158DRAFT_1799 0.56 -1.6
1,895,994 + B158DRAFT_1799 0.57 +0.1
1,896,060 - B158DRAFT_1799 0.62 +0.1
1,896,071 - B158DRAFT_1799 0.63 -0.4
1,896,092 - B158DRAFT_1799 0.64 +0.1
1,896,092 - B158DRAFT_1799 0.64 +0.2
1,896,142 - B158DRAFT_1799 0.68 -1.6
1,896,150 - B158DRAFT_1799 0.69 -1.6
1,896,189 + B158DRAFT_1799 0.71 -0.1
1,896,189 + B158DRAFT_1799 0.71 +1.7
1,896,198 - B158DRAFT_1799 0.72 +0.2
1,896,199 + B158DRAFT_1799 0.72 -0.5
1,896,207 - B158DRAFT_1799 0.73 -0.9
1,896,233 + B158DRAFT_1799 0.75 +0.8
1,896,311 - B158DRAFT_1799 0.81 -0.7
1,896,331 - B158DRAFT_1799 0.82 -0.8
1,896,338 + B158DRAFT_1799 0.83 -0.0
1,896,338 + B158DRAFT_1799 0.83 -0.4
1,896,338 + B158DRAFT_1799 0.83 +0.5
1,896,344 + B158DRAFT_1799 0.83 +1.1
1,896,346 - B158DRAFT_1799 0.83 +1.0
1,896,346 - B158DRAFT_1799 0.83 -0.2
1,896,346 - B158DRAFT_1799 0.83 -0.4
1,896,346 - B158DRAFT_1799 0.83 -0.1
1,896,346 - B158DRAFT_1799 0.83 -0.3
1,896,346 - B158DRAFT_1799 0.83 -0.8
1,896,374 - B158DRAFT_1799 0.85 -0.3
1,896,445 + -0.1
1,896,476 + -0.4
1,896,476 + -1.1
1,896,484 - +0.4
1,896,484 - -0.2
1,896,484 - -0.4
1,896,486 + +0.2
1,896,549 + +0.4
1,896,593 - +1.1
1,896,618 - -0.2
1,896,645 - +0.3
1,896,653 - -3.3
1,896,706 - +0.4
1,896,771 + +0.5
1,896,822 + +0.4
1,896,822 + -0.1
1,896,830 - +0.1
1,896,830 - -0.8
1,896,830 - +0.7
1,896,830 - +0.6
1,896,830 - +0.2
1,896,898 + +0.5
1,896,898 + -0.2
1,896,898 + +0.3
1,896,898 + +0.5
1,896,898 + -0.2
1,896,906 - +0.2
1,896,906 - -0.2
1,896,906 - +0.3
1,896,906 - +1.0
1,896,906 - +0.7
1,896,906 - +0.1
1,896,906 - +0.2
1,896,906 - +1.0
1,897,014 + -0.2
1,897,014 + +0.5
1,897,022 - +0.7
1,897,022 - -0.1
1,897,071 - -0.2
1,897,097 - +0.5
1,897,114 - B158DRAFT_1800 0.10 +0.6
1,897,114 - B158DRAFT_1800 0.10 +0.3
1,897,125 - B158DRAFT_1800 0.11 +0.9
1,897,132 - B158DRAFT_1800 0.11 +0.2
1,897,132 - B158DRAFT_1800 0.11 +0.1
1,897,132 - B158DRAFT_1800 0.11 +0.3
1,897,142 - B158DRAFT_1800 0.11 +0.7
1,897,142 - B158DRAFT_1800 0.11 +0.3
1,897,185 - B158DRAFT_1800 0.13 +0.3
1,897,185 - B158DRAFT_1800 0.13 +0.9
1,897,254 + B158DRAFT_1800 0.15 +0.3
1,897,254 + B158DRAFT_1800 0.15 +0.1
1,897,388 + B158DRAFT_1800 0.18 +0.2
1,897,404 + B158DRAFT_1800 0.19 -1.4
1,897,425 + B158DRAFT_1800 0.20 -0.1
1,897,462 - B158DRAFT_1800 0.21 -0.0
1,897,506 - B158DRAFT_1800 0.22 +0.5
1,897,531 + B158DRAFT_1800 0.23 +0.3
1,897,531 + B158DRAFT_1800 0.23 -0.3
1,897,531 + B158DRAFT_1800 0.23 +1.0

Or see this region's nucleotide sequence