Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1771

Experiment: m.b. Paraquat dichloride 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1770 and B158DRAFT_1771 are separated by 609 nucleotidesB158DRAFT_1771 and B158DRAFT_1772 are separated by 75 nucleotidesB158DRAFT_1772 and B158DRAFT_1773 are separated by 9 nucleotides B158DRAFT_1770: B158DRAFT_1770 - ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24), at 1,851,921 to 1,852,871 _1770 B158DRAFT_1771: B158DRAFT_1771 - ribonuclease, Rne/Rng family, at 1,853,481 to 1,856,294 _1771 B158DRAFT_1772: B158DRAFT_1772 - Fructose-2,6-bisphosphatase, at 1,856,370 to 1,856,936 _1772 B158DRAFT_1773: B158DRAFT_1773 - DNA ligase, NAD-dependent, at 1,856,946 to 1,858,961 _1773 Position (kb) 1853 1854 1855 1856 1857Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 1852.505 kb on + strand, within B158DRAFT_1770at 1852.513 kb on - strand, within B158DRAFT_1770at 1852.513 kb on - strand, within B158DRAFT_1770at 1852.513 kb on - strand, within B158DRAFT_1770at 1852.543 kb on - strand, within B158DRAFT_1770at 1852.545 kb on - strand, within B158DRAFT_1770at 1852.612 kb on + strand, within B158DRAFT_1770at 1852.627 kb on - strand, within B158DRAFT_1770at 1852.700 kb on - strand, within B158DRAFT_1770at 1852.728 kb on + strand, within B158DRAFT_1770at 1852.728 kb on + strand, within B158DRAFT_1770at 1852.736 kb on - strand, within B158DRAFT_1770at 1852.736 kb on - strand, within B158DRAFT_1770at 1852.806 kb on + strandat 1852.814 kb on - strandat 1852.814 kb on - strandat 1852.881 kb on + strandat 1852.901 kb on + strandat 1852.947 kb on + strandat 1853.110 kb on + strandat 1854.938 kb on - strand, within B158DRAFT_1771at 1854.946 kb on - strand, within B158DRAFT_1771at 1854.955 kb on + strand, within B158DRAFT_1771at 1854.963 kb on - strand, within B158DRAFT_1771at 1855.001 kb on - strand, within B158DRAFT_1771at 1855.013 kb on + strand, within B158DRAFT_1771at 1855.091 kb on + strand, within B158DRAFT_1771at 1855.124 kb on + strand, within B158DRAFT_1771at 1855.133 kb on + strand, within B158DRAFT_1771at 1855.133 kb on + strand, within B158DRAFT_1771at 1855.133 kb on + strand, within B158DRAFT_1771at 1855.133 kb on + strand, within B158DRAFT_1771at 1855.133 kb on + strand, within B158DRAFT_1771at 1855.151 kb on - strand, within B158DRAFT_1771at 1855.345 kb on - strand, within B158DRAFT_1771at 1855.484 kb on + strand, within B158DRAFT_1771at 1855.525 kb on + strand, within B158DRAFT_1771at 1855.627 kb on - strand, within B158DRAFT_1771at 1855.648 kb on - strand, within B158DRAFT_1771at 1855.663 kb on + strand, within B158DRAFT_1771at 1855.768 kb on - strand, within B158DRAFT_1771at 1855.844 kb on + strand, within B158DRAFT_1771at 1855.859 kb on + strand, within B158DRAFT_1771at 1855.859 kb on + strand, within B158DRAFT_1771at 1855.859 kb on + strand, within B158DRAFT_1771at 1855.859 kb on + strand, within B158DRAFT_1771at 1855.867 kb on - strand, within B158DRAFT_1771at 1855.867 kb on - strand, within B158DRAFT_1771at 1855.880 kb on + strand, within B158DRAFT_1771at 1855.880 kb on + strand, within B158DRAFT_1771at 1855.880 kb on + strand, within B158DRAFT_1771at 1855.888 kb on - strand, within B158DRAFT_1771at 1855.921 kb on + strand, within B158DRAFT_1771at 1856.051 kb on + strandat 1856.051 kb on + strandat 1856.059 kb on - strandat 1856.068 kb on + strandat 1856.179 kb on + strandat 1856.265 kb on + strandat 1856.302 kb on + strandat 1856.302 kb on + strandat 1856.497 kb on - strand, within B158DRAFT_1772at 1856.530 kb on + strand, within B158DRAFT_1772at 1856.542 kb on + strand, within B158DRAFT_1772at 1856.550 kb on - strand, within B158DRAFT_1772at 1856.596 kb on + strand, within B158DRAFT_1772at 1856.895 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.00390625 mg/ml
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1,852,505 + B158DRAFT_1770 0.61 -1.5
1,852,513 - B158DRAFT_1770 0.62 -0.1
1,852,513 - B158DRAFT_1770 0.62 -0.7
1,852,513 - B158DRAFT_1770 0.62 -1.0
1,852,543 - B158DRAFT_1770 0.65 -0.0
1,852,545 - B158DRAFT_1770 0.66 +0.1
1,852,612 + B158DRAFT_1770 0.73 +0.6
1,852,627 - B158DRAFT_1770 0.74 -1.5
1,852,700 - B158DRAFT_1770 0.82 -0.0
1,852,728 + B158DRAFT_1770 0.85 -1.3
1,852,728 + B158DRAFT_1770 0.85 -0.4
1,852,736 - B158DRAFT_1770 0.86 -0.6
1,852,736 - B158DRAFT_1770 0.86 -0.0
1,852,806 + -0.6
1,852,814 - -0.6
1,852,814 - -0.1
1,852,881 + -2.8
1,852,901 + +1.1
1,852,947 + +0.1
1,853,110 + +6.0
1,854,938 - B158DRAFT_1771 0.52 +3.7
1,854,946 - B158DRAFT_1771 0.52 +5.4
1,854,955 + B158DRAFT_1771 0.52 +5.6
1,854,963 - B158DRAFT_1771 0.53 +7.2
1,855,001 - B158DRAFT_1771 0.54 +4.9
1,855,013 + B158DRAFT_1771 0.54 +4.0
1,855,091 + B158DRAFT_1771 0.57 +3.6
1,855,124 + B158DRAFT_1771 0.58 +2.8
1,855,133 + B158DRAFT_1771 0.59 +1.4
1,855,133 + B158DRAFT_1771 0.59 +2.5
1,855,133 + B158DRAFT_1771 0.59 +1.4
1,855,133 + B158DRAFT_1771 0.59 +1.0
1,855,133 + B158DRAFT_1771 0.59 +1.3
1,855,151 - B158DRAFT_1771 0.59 +1.8
1,855,345 - B158DRAFT_1771 0.66 +0.9
1,855,484 + B158DRAFT_1771 0.71 +0.0
1,855,525 + B158DRAFT_1771 0.73 +0.6
1,855,627 - B158DRAFT_1771 0.76 -1.7
1,855,648 - B158DRAFT_1771 0.77 +0.7
1,855,663 + B158DRAFT_1771 0.78 +0.7
1,855,768 - B158DRAFT_1771 0.81 -0.6
1,855,844 + B158DRAFT_1771 0.84 -0.7
1,855,859 + B158DRAFT_1771 0.85 +0.4
1,855,859 + B158DRAFT_1771 0.85 -0.1
1,855,859 + B158DRAFT_1771 0.85 -0.3
1,855,859 + B158DRAFT_1771 0.85 +0.6
1,855,867 - B158DRAFT_1771 0.85 -1.2
1,855,867 - B158DRAFT_1771 0.85 +0.1
1,855,880 + B158DRAFT_1771 0.85 +0.4
1,855,880 + B158DRAFT_1771 0.85 +0.2
1,855,880 + B158DRAFT_1771 0.85 +0.5
1,855,888 - B158DRAFT_1771 0.86 +0.0
1,855,921 + B158DRAFT_1771 0.87 -0.2
1,856,051 + -1.1
1,856,051 + +0.0
1,856,059 - +1.2
1,856,068 + -0.3
1,856,179 + -0.1
1,856,265 + -0.9
1,856,302 + -0.6
1,856,302 + +1.3
1,856,497 - B158DRAFT_1772 0.22 +0.4
1,856,530 + B158DRAFT_1772 0.28 +0.0
1,856,542 + B158DRAFT_1772 0.30 -1.2
1,856,550 - B158DRAFT_1772 0.32 +0.2
1,856,596 + B158DRAFT_1772 0.40 +0.2
1,856,895 + -0.9

Or see this region's nucleotide sequence