Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1356

Experiment: m.b. Paraquat dichloride 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1354 and B158DRAFT_1355 are separated by 306 nucleotidesB158DRAFT_1355 and B158DRAFT_1356 are separated by 103 nucleotidesB158DRAFT_1356 and B158DRAFT_1357 are separated by 82 nucleotidesB158DRAFT_1357 and B158DRAFT_1358 are separated by 94 nucleotides B158DRAFT_1354: B158DRAFT_1354 - Glycine/D-amino acid oxidases (deaminating), at 1,398,505 to 1,399,788 _1354 B158DRAFT_1355: B158DRAFT_1355 - hypothetical protein, at 1,400,095 to 1,400,514 _1355 B158DRAFT_1356: B158DRAFT_1356 - CAAX amino terminal protease family., at 1,400,618 to 1,401,205 _1356 B158DRAFT_1357: B158DRAFT_1357 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 1,401,288 to 1,401,917 _1357 B158DRAFT_1358: B158DRAFT_1358 - 2-methylcitrate dehydratase (EC 4.2.1.79), at 1,402,012 to 1,403,457 _1358 Position (kb) 1400 1401 1402Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1399.628 kb on + strand, within B158DRAFT_1354at 1399.628 kb on + strand, within B158DRAFT_1354at 1399.633 kb on + strand, within B158DRAFT_1354at 1399.654 kb on + strand, within B158DRAFT_1354at 1399.666 kb on + strandat 1399.666 kb on + strandat 1399.674 kb on - strandat 1399.689 kb on + strandat 1399.689 kb on + strandat 1399.699 kb on + strandat 1399.699 kb on + strandat 1399.699 kb on + strandat 1399.707 kb on - strandat 1399.834 kb on + strandat 1399.834 kb on + strandat 1399.834 kb on + strandat 1399.842 kb on - strandat 1399.842 kb on - strandat 1399.842 kb on - strandat 1399.879 kb on - strandat 1399.879 kb on - strandat 1399.879 kb on - strandat 1399.881 kb on + strandat 1400.012 kb on - strandat 1400.029 kb on - strandat 1400.031 kb on + strandat 1400.031 kb on + strandat 1400.031 kb on + strandat 1400.031 kb on + strandat 1400.031 kb on + strandat 1400.031 kb on + strandat 1400.039 kb on - strandat 1400.039 kb on - strandat 1400.039 kb on - strandat 1400.039 kb on - strandat 1400.047 kb on + strandat 1400.055 kb on - strandat 1400.127 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.137 kb on - strand, within B158DRAFT_1355at 1400.137 kb on - strand, within B158DRAFT_1355at 1400.137 kb on - strand, within B158DRAFT_1355at 1400.137 kb on - strand, within B158DRAFT_1355at 1400.137 kb on - strand, within B158DRAFT_1355at 1400.137 kb on - strand, within B158DRAFT_1355at 1400.137 kb on - strand, within B158DRAFT_1355at 1400.148 kb on - strand, within B158DRAFT_1355at 1400.214 kb on - strand, within B158DRAFT_1355at 1400.385 kb on + strand, within B158DRAFT_1355at 1400.388 kb on - strand, within B158DRAFT_1355at 1400.467 kb on - strand, within B158DRAFT_1355at 1400.533 kb on + strandat 1400.582 kb on + strandat 1400.582 kb on + strandat 1400.583 kb on - strandat 1400.590 kb on - strandat 1400.590 kb on - strandat 1400.590 kb on - strandat 1400.590 kb on - strandat 1400.590 kb on - strandat 1400.652 kb on - strandat 1400.667 kb on - strandat 1400.670 kb on + strandat 1400.747 kb on + strand, within B158DRAFT_1356at 1400.747 kb on + strand, within B158DRAFT_1356at 1400.822 kb on - strand, within B158DRAFT_1356at 1400.893 kb on - strand, within B158DRAFT_1356at 1400.942 kb on - strand, within B158DRAFT_1356at 1400.942 kb on - strand, within B158DRAFT_1356at 1401.001 kb on - strand, within B158DRAFT_1356at 1401.021 kb on + strand, within B158DRAFT_1356at 1401.102 kb on - strand, within B158DRAFT_1356at 1401.109 kb on - strand, within B158DRAFT_1356at 1401.172 kb on - strandat 1401.181 kb on + strandat 1401.201 kb on - strandat 1401.250 kb on + strandat 1401.258 kb on - strandat 1401.385 kb on + strand, within B158DRAFT_1357at 1401.422 kb on + strand, within B158DRAFT_1357at 1401.430 kb on + strand, within B158DRAFT_1357at 1401.430 kb on + strand, within B158DRAFT_1357at 1401.450 kb on + strand, within B158DRAFT_1357at 1401.456 kb on + strand, within B158DRAFT_1357at 1401.458 kb on - strand, within B158DRAFT_1357at 1401.466 kb on + strand, within B158DRAFT_1357at 1401.529 kb on - strand, within B158DRAFT_1357at 1401.538 kb on - strand, within B158DRAFT_1357at 1401.553 kb on - strand, within B158DRAFT_1357at 1401.557 kb on + strand, within B158DRAFT_1357at 1401.567 kb on + strand, within B158DRAFT_1357at 1401.575 kb on - strand, within B158DRAFT_1357at 1401.575 kb on - strand, within B158DRAFT_1357at 1401.575 kb on - strand, within B158DRAFT_1357at 1401.576 kb on + strand, within B158DRAFT_1357at 1401.581 kb on - strand, within B158DRAFT_1357at 1401.584 kb on - strand, within B158DRAFT_1357at 1401.584 kb on - strand, within B158DRAFT_1357at 1401.739 kb on - strand, within B158DRAFT_1357at 1401.883 kb on - strandat 1401.892 kb on + strandat 1401.900 kb on - strandat 1401.900 kb on - strandat 1401.925 kb on + strandat 1401.925 kb on + strandat 1401.925 kb on + strandat 1401.933 kb on - strandat 1402.008 kb on + strandat 1402.008 kb on + strandat 1402.017 kb on - strandat 1402.056 kb on + strandat 1402.089 kb on - strandat 1402.101 kb on - strandat 1402.109 kb on + strandat 1402.157 kb on - strand, within B158DRAFT_1358at 1402.170 kb on + strand, within B158DRAFT_1358at 1402.170 kb on + strand, within B158DRAFT_1358at 1402.178 kb on - strand, within B158DRAFT_1358at 1402.183 kb on - strand, within B158DRAFT_1358at 1402.183 kb on - strand, within B158DRAFT_1358at 1402.194 kb on + strand, within B158DRAFT_1358at 1402.202 kb on - strand, within B158DRAFT_1358

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.00390625 mg/ml
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1,399,628 + B158DRAFT_1354 0.87 -1.3
1,399,628 + B158DRAFT_1354 0.87 -0.8
1,399,633 + B158DRAFT_1354 0.88 -0.5
1,399,654 + B158DRAFT_1354 0.89 +0.5
1,399,666 + -0.4
1,399,666 + -0.4
1,399,674 - -0.5
1,399,689 + +0.3
1,399,689 + +0.8
1,399,699 + -0.4
1,399,699 + +0.2
1,399,699 + -0.2
1,399,707 - -1.0
1,399,834 + -0.3
1,399,834 + +0.8
1,399,834 + -0.5
1,399,842 - +0.1
1,399,842 - -0.8
1,399,842 - -1.0
1,399,879 - -0.5
1,399,879 - -0.0
1,399,879 - -0.3
1,399,881 + -0.2
1,400,012 - -0.5
1,400,029 - +0.7
1,400,031 + -0.0
1,400,031 + +0.2
1,400,031 + -2.0
1,400,031 + -0.2
1,400,031 + -1.5
1,400,031 + +0.8
1,400,039 - -0.5
1,400,039 - -0.1
1,400,039 - +0.3
1,400,039 - -0.0
1,400,047 + +0.1
1,400,055 - -1.5
1,400,127 + -0.1
1,400,129 + -0.4
1,400,129 + -0.8
1,400,129 + +4.3
1,400,129 + +0.5
1,400,129 + +0.1
1,400,129 + +0.3
1,400,129 + -0.3
1,400,129 + -0.5
1,400,129 + -0.5
1,400,129 + -0.5
1,400,137 - B158DRAFT_1355 0.10 -0.3
1,400,137 - B158DRAFT_1355 0.10 +0.1
1,400,137 - B158DRAFT_1355 0.10 -0.5
1,400,137 - B158DRAFT_1355 0.10 -0.0
1,400,137 - B158DRAFT_1355 0.10 -0.0
1,400,137 - B158DRAFT_1355 0.10 -0.8
1,400,137 - B158DRAFT_1355 0.10 +0.5
1,400,148 - B158DRAFT_1355 0.13 +0.8
1,400,214 - B158DRAFT_1355 0.28 -0.3
1,400,385 + B158DRAFT_1355 0.69 +0.8
1,400,388 - B158DRAFT_1355 0.70 -0.8
1,400,467 - B158DRAFT_1355 0.89 -0.3
1,400,533 + +0.3
1,400,582 + -0.2
1,400,582 + -0.3
1,400,583 - -0.2
1,400,590 - +1.8
1,400,590 - -0.9
1,400,590 - -0.6
1,400,590 - -0.3
1,400,590 - +0.6
1,400,652 - -1.8
1,400,667 - -1.1
1,400,670 + +1.1
1,400,747 + B158DRAFT_1356 0.22 +0.2
1,400,747 + B158DRAFT_1356 0.22 +0.4
1,400,822 - B158DRAFT_1356 0.35 +0.6
1,400,893 - B158DRAFT_1356 0.47 +1.0
1,400,942 - B158DRAFT_1356 0.55 +0.0
1,400,942 - B158DRAFT_1356 0.55 -1.3
1,401,001 - B158DRAFT_1356 0.65 -0.6
1,401,021 + B158DRAFT_1356 0.69 -0.8
1,401,102 - B158DRAFT_1356 0.82 -1.8
1,401,109 - B158DRAFT_1356 0.84 -0.3
1,401,172 - -2.6
1,401,181 + -0.6
1,401,201 - -0.2
1,401,250 + -0.8
1,401,258 - +1.1
1,401,385 + B158DRAFT_1357 0.15 -1.2
1,401,422 + B158DRAFT_1357 0.21 -0.3
1,401,430 + B158DRAFT_1357 0.23 -0.5
1,401,430 + B158DRAFT_1357 0.23 -0.0
1,401,450 + B158DRAFT_1357 0.26 +0.0
1,401,456 + B158DRAFT_1357 0.27 +0.0
1,401,458 - B158DRAFT_1357 0.27 -0.2
1,401,466 + B158DRAFT_1357 0.28 -0.3
1,401,529 - B158DRAFT_1357 0.38 +1.6
1,401,538 - B158DRAFT_1357 0.40 -0.5
1,401,553 - B158DRAFT_1357 0.42 +0.7
1,401,557 + B158DRAFT_1357 0.43 -0.5
1,401,567 + B158DRAFT_1357 0.44 +0.1
1,401,575 - B158DRAFT_1357 0.46 -0.3
1,401,575 - B158DRAFT_1357 0.46 -0.2
1,401,575 - B158DRAFT_1357 0.46 +0.0
1,401,576 + B158DRAFT_1357 0.46 -0.3
1,401,581 - B158DRAFT_1357 0.47 -0.7
1,401,584 - B158DRAFT_1357 0.47 -1.1
1,401,584 - B158DRAFT_1357 0.47 +1.0
1,401,739 - B158DRAFT_1357 0.72 -0.4
1,401,883 - -0.1
1,401,892 + -0.1
1,401,900 - -1.9
1,401,900 - -0.5
1,401,925 + -0.3
1,401,925 + -1.4
1,401,925 + -2.8
1,401,933 - -1.1
1,402,008 + +0.4
1,402,008 + +0.2
1,402,017 - -0.8
1,402,056 + -0.6
1,402,089 - -0.3
1,402,101 - +0.7
1,402,109 + -0.4
1,402,157 - B158DRAFT_1358 0.10 +0.5
1,402,170 + B158DRAFT_1358 0.11 -0.3
1,402,170 + B158DRAFT_1358 0.11 +0.1
1,402,178 - B158DRAFT_1358 0.11 -0.5
1,402,183 - B158DRAFT_1358 0.12 -1.1
1,402,183 - B158DRAFT_1358 0.12 -1.0
1,402,194 + B158DRAFT_1358 0.13 -0.7
1,402,202 - B158DRAFT_1358 0.13 -0.2

Or see this region's nucleotide sequence