Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1312

Experiment: m.b. Paraquat dichloride 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1310 and B158DRAFT_1311 are separated by 88 nucleotidesB158DRAFT_1311 and B158DRAFT_1312 are separated by 41 nucleotidesB158DRAFT_1312 and B158DRAFT_1313 are separated by 62 nucleotidesB158DRAFT_1313 and B158DRAFT_1314 are separated by 85 nucleotides B158DRAFT_1310: B158DRAFT_1310 - Cold shock proteins, at 1,356,969 to 1,357,178 _1310 B158DRAFT_1311: B158DRAFT_1311 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,357,267 to 1,357,902 _1311 B158DRAFT_1312: B158DRAFT_1312 - Superfamily II DNA and RNA helicases, at 1,357,944 to 1,359,299 _1312 B158DRAFT_1313: B158DRAFT_1313 - Uncharacterized protein conserved in bacteria, at 1,359,362 to 1,359,610 _1313 B158DRAFT_1314: B158DRAFT_1314 - Zn-dependent dipeptidase, microsomal dipeptidase homolog, at 1,359,696 to 1,360,964 _1314 Position (kb) 1357 1358 1359 1360Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1356.971 kb on + strandat 1356.979 kb on - strandat 1356.979 kb on - strandat 1356.979 kb on - strandat 1356.981 kb on + strandat 1357.019 kb on - strand, within B158DRAFT_1310at 1357.040 kb on + strand, within B158DRAFT_1310at 1357.064 kb on + strand, within B158DRAFT_1310at 1357.200 kb on - strandat 1357.273 kb on - strandat 1358.374 kb on - strand, within B158DRAFT_1312at 1358.374 kb on - strand, within B158DRAFT_1312at 1358.452 kb on - strand, within B158DRAFT_1312at 1358.510 kb on - strand, within B158DRAFT_1312at 1358.672 kb on - strand, within B158DRAFT_1312at 1358.675 kb on - strand, within B158DRAFT_1312at 1358.675 kb on - strand, within B158DRAFT_1312at 1358.745 kb on + strand, within B158DRAFT_1312at 1358.748 kb on - strand, within B158DRAFT_1312at 1358.748 kb on - strand, within B158DRAFT_1312at 1358.756 kb on - strand, within B158DRAFT_1312at 1358.756 kb on - strand, within B158DRAFT_1312at 1358.786 kb on - strand, within B158DRAFT_1312at 1358.909 kb on - strand, within B158DRAFT_1312at 1359.147 kb on - strand, within B158DRAFT_1312at 1359.173 kb on - strandat 1359.173 kb on - strandat 1359.181 kb on - strandat 1359.191 kb on - strandat 1359.210 kb on - strandat 1359.371 kb on - strandat 1359.373 kb on + strandat 1359.381 kb on - strandat 1359.417 kb on + strand, within B158DRAFT_1313at 1359.425 kb on - strand, within B158DRAFT_1313at 1359.427 kb on + strand, within B158DRAFT_1313at 1359.453 kb on + strand, within B158DRAFT_1313at 1359.483 kb on + strand, within B158DRAFT_1313at 1359.542 kb on + strand, within B158DRAFT_1313at 1359.542 kb on + strand, within B158DRAFT_1313at 1359.542 kb on + strand, within B158DRAFT_1313at 1359.542 kb on + strand, within B158DRAFT_1313at 1359.542 kb on + strand, within B158DRAFT_1313at 1359.550 kb on - strand, within B158DRAFT_1313at 1359.595 kb on + strandat 1359.595 kb on + strandat 1359.595 kb on + strandat 1359.603 kb on - strandat 1359.654 kb on + strandat 1359.809 kb on + strandat 1359.809 kb on + strandat 1359.809 kb on + strandat 1359.850 kb on - strand, within B158DRAFT_1314at 1359.850 kb on - strand, within B158DRAFT_1314at 1359.935 kb on - strand, within B158DRAFT_1314at 1359.975 kb on + strand, within B158DRAFT_1314at 1359.983 kb on - strand, within B158DRAFT_1314at 1360.007 kb on + strand, within B158DRAFT_1314at 1360.015 kb on - strand, within B158DRAFT_1314at 1360.045 kb on + strand, within B158DRAFT_1314at 1360.045 kb on + strand, within B158DRAFT_1314at 1360.045 kb on - strand, within B158DRAFT_1314at 1360.135 kb on + strand, within B158DRAFT_1314at 1360.147 kb on + strand, within B158DRAFT_1314at 1360.147 kb on + strand, within B158DRAFT_1314at 1360.147 kb on + strand, within B158DRAFT_1314at 1360.147 kb on + strand, within B158DRAFT_1314at 1360.155 kb on - strand, within B158DRAFT_1314at 1360.155 kb on - strand, within B158DRAFT_1314at 1360.156 kb on - strand, within B158DRAFT_1314at 1360.158 kb on + strand, within B158DRAFT_1314at 1360.158 kb on + strand, within B158DRAFT_1314at 1360.159 kb on + strand, within B158DRAFT_1314at 1360.172 kb on + strand, within B158DRAFT_1314at 1360.226 kb on + strand, within B158DRAFT_1314at 1360.227 kb on - strand, within B158DRAFT_1314at 1360.252 kb on + strand, within B158DRAFT_1314at 1360.260 kb on - strand, within B158DRAFT_1314at 1360.260 kb on - strand, within B158DRAFT_1314

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.00390625 mg/ml
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1,356,971 + -0.6
1,356,979 - -0.2
1,356,979 - -0.3
1,356,979 - +0.3
1,356,981 + -0.2
1,357,019 - B158DRAFT_1310 0.24 -0.6
1,357,040 + B158DRAFT_1310 0.34 -0.7
1,357,064 + B158DRAFT_1310 0.45 +0.3
1,357,200 - +0.9
1,357,273 - -0.6
1,358,374 - B158DRAFT_1312 0.32 -0.5
1,358,374 - B158DRAFT_1312 0.32 +0.1
1,358,452 - B158DRAFT_1312 0.37 -0.4
1,358,510 - B158DRAFT_1312 0.42 +0.5
1,358,672 - B158DRAFT_1312 0.54 -0.6
1,358,675 - B158DRAFT_1312 0.54 +0.3
1,358,675 - B158DRAFT_1312 0.54 +5.9
1,358,745 + B158DRAFT_1312 0.59 +1.3
1,358,748 - B158DRAFT_1312 0.59 -1.1
1,358,748 - B158DRAFT_1312 0.59 -0.4
1,358,756 - B158DRAFT_1312 0.60 -0.4
1,358,756 - B158DRAFT_1312 0.60 -0.0
1,358,786 - B158DRAFT_1312 0.62 -0.3
1,358,909 - B158DRAFT_1312 0.71 +0.1
1,359,147 - B158DRAFT_1312 0.89 -0.5
1,359,173 - +0.2
1,359,173 - +0.7
1,359,181 - +0.4
1,359,191 - -0.3
1,359,210 - -0.1
1,359,371 - -1.2
1,359,373 + -0.2
1,359,381 - -0.7
1,359,417 + B158DRAFT_1313 0.22 -0.4
1,359,425 - B158DRAFT_1313 0.25 -0.9
1,359,427 + B158DRAFT_1313 0.26 -0.6
1,359,453 + B158DRAFT_1313 0.37 -0.5
1,359,483 + B158DRAFT_1313 0.49 -0.9
1,359,542 + B158DRAFT_1313 0.72 -1.9
1,359,542 + B158DRAFT_1313 0.72 +0.3
1,359,542 + B158DRAFT_1313 0.72 +0.1
1,359,542 + B158DRAFT_1313 0.72 -0.5
1,359,542 + B158DRAFT_1313 0.72 +0.2
1,359,550 - B158DRAFT_1313 0.76 -0.5
1,359,595 + -0.2
1,359,595 + -0.5
1,359,595 + +0.3
1,359,603 - +1.4
1,359,654 + -0.3
1,359,809 + -0.8
1,359,809 + -0.6
1,359,809 + -0.9
1,359,850 - B158DRAFT_1314 0.12 -0.8
1,359,850 - B158DRAFT_1314 0.12 +3.5
1,359,935 - B158DRAFT_1314 0.19 +2.4
1,359,975 + B158DRAFT_1314 0.22 -0.6
1,359,983 - B158DRAFT_1314 0.23 -0.3
1,360,007 + B158DRAFT_1314 0.25 +0.5
1,360,015 - B158DRAFT_1314 0.25 +1.5
1,360,045 + B158DRAFT_1314 0.28 -0.6
1,360,045 + B158DRAFT_1314 0.28 -0.2
1,360,045 - B158DRAFT_1314 0.28 -0.0
1,360,135 + B158DRAFT_1314 0.35 -2.7
1,360,147 + B158DRAFT_1314 0.36 +1.1
1,360,147 + B158DRAFT_1314 0.36 -0.3
1,360,147 + B158DRAFT_1314 0.36 -0.3
1,360,147 + B158DRAFT_1314 0.36 +0.4
1,360,155 - B158DRAFT_1314 0.36 -0.2
1,360,155 - B158DRAFT_1314 0.36 +0.4
1,360,156 - B158DRAFT_1314 0.36 +0.3
1,360,158 + B158DRAFT_1314 0.36 -0.8
1,360,158 + B158DRAFT_1314 0.36 -0.3
1,360,159 + B158DRAFT_1314 0.36 +0.0
1,360,172 + B158DRAFT_1314 0.38 -1.7
1,360,226 + B158DRAFT_1314 0.42 +0.0
1,360,227 - B158DRAFT_1314 0.42 +0.8
1,360,252 + B158DRAFT_1314 0.44 -1.4
1,360,260 - B158DRAFT_1314 0.44 -0.8
1,360,260 - B158DRAFT_1314 0.44 -0.2

Or see this region's nucleotide sequence