Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1308

Experiment: m.b. Paraquat dichloride 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1306 and B158DRAFT_1307 are separated by 9 nucleotidesB158DRAFT_1307 and B158DRAFT_1308 are separated by 97 nucleotidesB158DRAFT_1308 and B158DRAFT_1309 overlap by 4 nucleotidesB158DRAFT_1309 and B158DRAFT_1310 are separated by 248 nucleotidesB158DRAFT_1310 and B158DRAFT_1311 are separated by 88 nucleotides B158DRAFT_1306: B158DRAFT_1306 - Uncharacterized conserved protein, at 1,352,845 to 1,354,737 _1306 B158DRAFT_1307: B158DRAFT_1307 - GTP cyclohydrolase I, at 1,354,747 to 1,355,304 _1307 B158DRAFT_1308: B158DRAFT_1308 - 4-phosphoerythronate dehydrogenase (EC 1.1.1.290), at 1,355,402 to 1,356,487 _1308 B158DRAFT_1309: B158DRAFT_1309 - hypothetical protein, at 1,356,484 to 1,356,720 _1309 B158DRAFT_1310: B158DRAFT_1310 - Cold shock proteins, at 1,356,969 to 1,357,178 _1310 B158DRAFT_1311: B158DRAFT_1311 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,357,267 to 1,357,902 _1311 Position (kb) 1355 1356 1357Strain fitness (log2 ratio) -2 -1 0 1 2at 1354.407 kb on + strand, within B158DRAFT_1306at 1354.415 kb on - strand, within B158DRAFT_1306at 1354.415 kb on - strand, within B158DRAFT_1306at 1354.415 kb on - strand, within B158DRAFT_1306at 1354.415 kb on - strand, within B158DRAFT_1306at 1354.415 kb on - strand, within B158DRAFT_1306at 1354.415 kb on - strand, within B158DRAFT_1306at 1354.431 kb on - strand, within B158DRAFT_1306at 1354.451 kb on + strand, within B158DRAFT_1306at 1354.464 kb on + strand, within B158DRAFT_1306at 1354.472 kb on - strand, within B158DRAFT_1306at 1354.640 kb on - strandat 1354.645 kb on + strandat 1354.653 kb on - strandat 1354.657 kb on + strandat 1354.672 kb on - strandat 1354.744 kb on + strandat 1355.325 kb on - strandat 1356.484 kb on - strandat 1356.484 kb on - strandat 1356.509 kb on - strand, within B158DRAFT_1309at 1356.583 kb on + strand, within B158DRAFT_1309at 1356.583 kb on + strand, within B158DRAFT_1309at 1356.585 kb on + strand, within B158DRAFT_1309at 1356.603 kb on - strand, within B158DRAFT_1309at 1356.603 kb on - strand, within B158DRAFT_1309at 1356.661 kb on + strand, within B158DRAFT_1309at 1356.722 kb on + strandat 1356.732 kb on + strandat 1356.732 kb on + strandat 1356.740 kb on - strandat 1356.901 kb on + strandat 1356.901 kb on + strandat 1356.901 kb on + strandat 1356.909 kb on - strandat 1356.909 kb on - strandat 1356.909 kb on - strandat 1356.909 kb on - strandat 1356.971 kb on + strandat 1356.979 kb on - strandat 1356.979 kb on - strandat 1356.979 kb on - strandat 1356.981 kb on + strandat 1357.019 kb on - strand, within B158DRAFT_1310at 1357.040 kb on + strand, within B158DRAFT_1310at 1357.064 kb on + strand, within B158DRAFT_1310at 1357.200 kb on - strandat 1357.273 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.00390625 mg/ml
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1,354,407 + B158DRAFT_1306 0.83 -0.4
1,354,415 - B158DRAFT_1306 0.83 -0.5
1,354,415 - B158DRAFT_1306 0.83 +0.1
1,354,415 - B158DRAFT_1306 0.83 -0.2
1,354,415 - B158DRAFT_1306 0.83 -1.8
1,354,415 - B158DRAFT_1306 0.83 -0.3
1,354,415 - B158DRAFT_1306 0.83 +0.2
1,354,431 - B158DRAFT_1306 0.84 -1.0
1,354,451 + B158DRAFT_1306 0.85 -0.6
1,354,464 + B158DRAFT_1306 0.86 +0.1
1,354,472 - B158DRAFT_1306 0.86 +0.1
1,354,640 - -0.1
1,354,645 + -0.4
1,354,653 - -0.6
1,354,657 + -0.1
1,354,672 - -0.1
1,354,744 + +0.6
1,355,325 - +0.2
1,356,484 - +2.5
1,356,484 - -0.9
1,356,509 - B158DRAFT_1309 0.11 -1.3
1,356,583 + B158DRAFT_1309 0.42 +0.0
1,356,583 + B158DRAFT_1309 0.42 +0.5
1,356,585 + B158DRAFT_1309 0.43 +0.2
1,356,603 - B158DRAFT_1309 0.50 -0.1
1,356,603 - B158DRAFT_1309 0.50 -1.6
1,356,661 + B158DRAFT_1309 0.75 +0.1
1,356,722 + +0.0
1,356,732 + -0.3
1,356,732 + -0.4
1,356,740 - +1.1
1,356,901 + -0.5
1,356,901 + -0.4
1,356,901 + +0.3
1,356,909 - +0.8
1,356,909 - -0.3
1,356,909 - -0.8
1,356,909 - +1.5
1,356,971 + -0.6
1,356,979 - -0.2
1,356,979 - -0.3
1,356,979 - +0.3
1,356,981 + -0.2
1,357,019 - B158DRAFT_1310 0.24 -0.6
1,357,040 + B158DRAFT_1310 0.34 -0.7
1,357,064 + B158DRAFT_1310 0.45 +0.3
1,357,200 - +0.9
1,357,273 - -0.6

Or see this region's nucleotide sequence