Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1251

Experiment: m.b. Paraquat dichloride 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1250 and B158DRAFT_1251 are separated by 36 nucleotidesB158DRAFT_1251 and B158DRAFT_1252 are separated by 100 nucleotidesB158DRAFT_1252 and B158DRAFT_1253 are separated by 20 nucleotides B158DRAFT_1250: B158DRAFT_1250 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,290,106 to 1,291,107 _1250 B158DRAFT_1251: B158DRAFT_1251 - hypothetical protein, at 1,291,144 to 1,291,338 _1251 B158DRAFT_1252: B158DRAFT_1252 - Pirin-related protein, at 1,291,439 to 1,292,143 _1252 B158DRAFT_1253: B158DRAFT_1253 - Predicted permeases, at 1,292,164 to 1,292,919 _1253 Position (kb) 1291 1292Strain fitness (log2 ratio) -2 -1 0 1 2at 1290.182 kb on + strandat 1290.207 kb on - strand, within B158DRAFT_1250at 1290.247 kb on + strand, within B158DRAFT_1250at 1290.378 kb on - strand, within B158DRAFT_1250at 1290.424 kb on - strand, within B158DRAFT_1250at 1290.431 kb on + strand, within B158DRAFT_1250at 1290.458 kb on + strand, within B158DRAFT_1250at 1290.458 kb on + strand, within B158DRAFT_1250at 1290.458 kb on + strand, within B158DRAFT_1250at 1290.466 kb on - strand, within B158DRAFT_1250at 1290.466 kb on - strand, within B158DRAFT_1250at 1290.466 kb on - strand, within B158DRAFT_1250at 1290.583 kb on + strand, within B158DRAFT_1250at 1290.583 kb on + strand, within B158DRAFT_1250at 1290.602 kb on + strand, within B158DRAFT_1250at 1290.608 kb on + strand, within B158DRAFT_1250at 1290.642 kb on - strand, within B158DRAFT_1250at 1290.644 kb on + strand, within B158DRAFT_1250at 1290.652 kb on - strand, within B158DRAFT_1250at 1290.652 kb on - strand, within B158DRAFT_1250at 1290.686 kb on + strand, within B158DRAFT_1250at 1290.694 kb on - strand, within B158DRAFT_1250at 1290.694 kb on - strand, within B158DRAFT_1250at 1290.717 kb on + strand, within B158DRAFT_1250at 1290.717 kb on + strand, within B158DRAFT_1250at 1290.725 kb on - strand, within B158DRAFT_1250at 1290.735 kb on + strand, within B158DRAFT_1250at 1290.743 kb on - strand, within B158DRAFT_1250at 1290.743 kb on - strand, within B158DRAFT_1250at 1290.880 kb on - strand, within B158DRAFT_1250at 1290.880 kb on - strand, within B158DRAFT_1250at 1290.880 kb on - strand, within B158DRAFT_1250at 1290.944 kb on + strand, within B158DRAFT_1250at 1290.944 kb on + strand, within B158DRAFT_1250at 1290.944 kb on + strand, within B158DRAFT_1250at 1290.944 kb on + strand, within B158DRAFT_1250at 1290.944 kb on + strand, within B158DRAFT_1250at 1290.944 kb on + strand, within B158DRAFT_1250at 1290.944 kb on + strand, within B158DRAFT_1250at 1290.952 kb on - strand, within B158DRAFT_1250at 1290.952 kb on - strand, within B158DRAFT_1250at 1290.952 kb on - strand, within B158DRAFT_1250at 1290.952 kb on - strand, within B158DRAFT_1250at 1290.952 kb on - strand, within B158DRAFT_1250at 1290.952 kb on - strand, within B158DRAFT_1250at 1290.961 kb on + strand, within B158DRAFT_1250at 1290.986 kb on - strand, within B158DRAFT_1250at 1291.015 kb on + strandat 1291.023 kb on - strandat 1291.039 kb on + strandat 1291.057 kb on - strandat 1291.057 kb on - strandat 1291.057 kb on - strandat 1291.064 kb on + strandat 1291.064 kb on + strandat 1291.064 kb on + strandat 1291.064 kb on + strandat 1291.072 kb on - strandat 1291.072 kb on - strandat 1291.072 kb on - strandat 1291.128 kb on - strandat 1291.135 kb on + strandat 1291.184 kb on + strand, within B158DRAFT_1251at 1291.189 kb on + strand, within B158DRAFT_1251at 1291.219 kb on + strand, within B158DRAFT_1251at 1291.230 kb on + strand, within B158DRAFT_1251at 1291.245 kb on + strand, within B158DRAFT_1251at 1291.245 kb on - strand, within B158DRAFT_1251at 1291.251 kb on + strand, within B158DRAFT_1251at 1291.298 kb on + strand, within B158DRAFT_1251at 1291.310 kb on + strand, within B158DRAFT_1251at 1291.397 kb on + strandat 1291.405 kb on - strandat 1291.405 kb on - strandat 1291.405 kb on - strandat 1291.405 kb on - strandat 1291.410 kb on - strandat 1291.447 kb on - strandat 1291.452 kb on + strandat 1291.460 kb on - strandat 1291.486 kb on + strandat 1291.569 kb on - strand, within B158DRAFT_1252at 1291.576 kb on + strand, within B158DRAFT_1252at 1291.577 kb on + strand, within B158DRAFT_1252at 1291.577 kb on - strand, within B158DRAFT_1252at 1291.647 kb on - strand, within B158DRAFT_1252at 1291.658 kb on + strand, within B158DRAFT_1252at 1291.658 kb on + strand, within B158DRAFT_1252at 1291.663 kb on + strand, within B158DRAFT_1252at 1291.663 kb on + strand, within B158DRAFT_1252at 1291.663 kb on + strand, within B158DRAFT_1252at 1291.666 kb on - strand, within B158DRAFT_1252at 1291.666 kb on - strand, within B158DRAFT_1252at 1291.711 kb on - strand, within B158DRAFT_1252at 1291.711 kb on - strand, within B158DRAFT_1252at 1291.722 kb on + strand, within B158DRAFT_1252at 1291.722 kb on + strand, within B158DRAFT_1252at 1291.727 kb on + strand, within B158DRAFT_1252at 1291.730 kb on - strand, within B158DRAFT_1252at 1291.730 kb on - strand, within B158DRAFT_1252at 1291.735 kb on - strand, within B158DRAFT_1252at 1291.735 kb on - strand, within B158DRAFT_1252at 1291.821 kb on + strand, within B158DRAFT_1252at 1291.829 kb on - strand, within B158DRAFT_1252at 1291.829 kb on - strand, within B158DRAFT_1252at 1291.835 kb on + strand, within B158DRAFT_1252at 1291.843 kb on - strand, within B158DRAFT_1252at 1291.872 kb on - strand, within B158DRAFT_1252at 1291.886 kb on - strand, within B158DRAFT_1252at 1291.906 kb on - strand, within B158DRAFT_1252at 1291.908 kb on + strand, within B158DRAFT_1252at 1291.908 kb on + strand, within B158DRAFT_1252at 1291.908 kb on + strand, within B158DRAFT_1252at 1291.908 kb on + strand, within B158DRAFT_1252at 1291.913 kb on + strand, within B158DRAFT_1252at 1291.916 kb on - strand, within B158DRAFT_1252at 1291.921 kb on - strand, within B158DRAFT_1252at 1291.921 kb on - strand, within B158DRAFT_1252at 1291.942 kb on + strand, within B158DRAFT_1252at 1291.942 kb on + strand, within B158DRAFT_1252at 1291.942 kb on + strand, within B158DRAFT_1252at 1291.942 kb on + strand, within B158DRAFT_1252at 1291.945 kb on - strand, within B158DRAFT_1252at 1291.949 kb on + strand, within B158DRAFT_1252at 1291.950 kb on - strand, within B158DRAFT_1252at 1291.950 kb on - strand, within B158DRAFT_1252at 1291.950 kb on - strand, within B158DRAFT_1252at 1291.950 kb on - strand, within B158DRAFT_1252at 1291.950 kb on - strand, within B158DRAFT_1252at 1291.957 kb on - strand, within B158DRAFT_1252at 1291.959 kb on + strand, within B158DRAFT_1252at 1291.965 kb on - strand, within B158DRAFT_1252at 1291.965 kb on - strand, within B158DRAFT_1252at 1291.967 kb on - strand, within B158DRAFT_1252at 1292.000 kb on + strand, within B158DRAFT_1252at 1292.006 kb on + strand, within B158DRAFT_1252at 1292.006 kb on + strand, within B158DRAFT_1252at 1292.006 kb on + strand, within B158DRAFT_1252at 1292.014 kb on - strand, within B158DRAFT_1252at 1292.037 kb on + strand, within B158DRAFT_1252at 1292.045 kb on - strand, within B158DRAFT_1252at 1292.103 kb on + strandat 1292.118 kb on - strandat 1292.132 kb on + strandat 1292.132 kb on + strandat 1292.140 kb on - strandat 1292.145 kb on + strandat 1292.189 kb on + strandat 1292.201 kb on + strandat 1292.206 kb on + strandat 1292.209 kb on - strandat 1292.214 kb on - strandat 1292.214 kb on - strandat 1292.214 kb on - strandat 1292.251 kb on + strand, within B158DRAFT_1253at 1292.288 kb on + strand, within B158DRAFT_1253

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.00390625 mg/ml
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1,290,182 + -0.3
1,290,207 - B158DRAFT_1250 0.10 -0.9
1,290,247 + B158DRAFT_1250 0.14 -0.5
1,290,378 - B158DRAFT_1250 0.27 -0.7
1,290,424 - B158DRAFT_1250 0.32 -0.4
1,290,431 + B158DRAFT_1250 0.32 +0.1
1,290,458 + B158DRAFT_1250 0.35 +0.3
1,290,458 + B158DRAFT_1250 0.35 +0.3
1,290,458 + B158DRAFT_1250 0.35 -0.2
1,290,466 - B158DRAFT_1250 0.36 +0.3
1,290,466 - B158DRAFT_1250 0.36 +0.6
1,290,466 - B158DRAFT_1250 0.36 -0.3
1,290,583 + B158DRAFT_1250 0.48 +1.4
1,290,583 + B158DRAFT_1250 0.48 +0.3
1,290,602 + B158DRAFT_1250 0.50 +0.1
1,290,608 + B158DRAFT_1250 0.50 +0.1
1,290,642 - B158DRAFT_1250 0.53 +0.8
1,290,644 + B158DRAFT_1250 0.54 +0.0
1,290,652 - B158DRAFT_1250 0.54 -0.6
1,290,652 - B158DRAFT_1250 0.54 -0.0
1,290,686 + B158DRAFT_1250 0.58 -0.5
1,290,694 - B158DRAFT_1250 0.59 -1.3
1,290,694 - B158DRAFT_1250 0.59 -0.1
1,290,717 + B158DRAFT_1250 0.61 +0.1
1,290,717 + B158DRAFT_1250 0.61 -0.4
1,290,725 - B158DRAFT_1250 0.62 -0.8
1,290,735 + B158DRAFT_1250 0.63 -0.4
1,290,743 - B158DRAFT_1250 0.64 -0.7
1,290,743 - B158DRAFT_1250 0.64 -0.3
1,290,880 - B158DRAFT_1250 0.77 -0.1
1,290,880 - B158DRAFT_1250 0.77 -0.3
1,290,880 - B158DRAFT_1250 0.77 -0.7
1,290,944 + B158DRAFT_1250 0.84 +2.2
1,290,944 + B158DRAFT_1250 0.84 +0.8
1,290,944 + B158DRAFT_1250 0.84 -1.3
1,290,944 + B158DRAFT_1250 0.84 +1.1
1,290,944 + B158DRAFT_1250 0.84 -0.5
1,290,944 + B158DRAFT_1250 0.84 -1.2
1,290,944 + B158DRAFT_1250 0.84 +0.0
1,290,952 - B158DRAFT_1250 0.84 -0.4
1,290,952 - B158DRAFT_1250 0.84 -0.7
1,290,952 - B158DRAFT_1250 0.84 -0.5
1,290,952 - B158DRAFT_1250 0.84 +0.5
1,290,952 - B158DRAFT_1250 0.84 -0.3
1,290,952 - B158DRAFT_1250 0.84 -0.1
1,290,961 + B158DRAFT_1250 0.85 +0.4
1,290,986 - B158DRAFT_1250 0.88 -0.9
1,291,015 + +0.5
1,291,023 - -1.4
1,291,039 + +0.3
1,291,057 - -1.4
1,291,057 - +0.7
1,291,057 - -0.2
1,291,064 + -0.3
1,291,064 + +0.0
1,291,064 + -0.2
1,291,064 + -1.3
1,291,072 - -1.3
1,291,072 - -0.6
1,291,072 - -0.2
1,291,128 - -0.6
1,291,135 + +0.3
1,291,184 + B158DRAFT_1251 0.21 -0.3
1,291,189 + B158DRAFT_1251 0.23 -0.2
1,291,219 + B158DRAFT_1251 0.38 -0.2
1,291,230 + B158DRAFT_1251 0.44 +0.4
1,291,245 + B158DRAFT_1251 0.52 -0.1
1,291,245 - B158DRAFT_1251 0.52 +2.5
1,291,251 + B158DRAFT_1251 0.55 +0.2
1,291,298 + B158DRAFT_1251 0.79 -2.0
1,291,310 + B158DRAFT_1251 0.85 -0.4
1,291,397 + -0.5
1,291,405 - -0.1
1,291,405 - -0.4
1,291,405 - -0.0
1,291,405 - -0.0
1,291,410 - -1.0
1,291,447 - +0.1
1,291,452 + +0.2
1,291,460 - -0.4
1,291,486 + -0.8
1,291,569 - B158DRAFT_1252 0.18 -0.1
1,291,576 + B158DRAFT_1252 0.19 -0.6
1,291,577 + B158DRAFT_1252 0.20 -0.3
1,291,577 - B158DRAFT_1252 0.20 -0.6
1,291,647 - B158DRAFT_1252 0.30 -1.1
1,291,658 + B158DRAFT_1252 0.31 -0.3
1,291,658 + B158DRAFT_1252 0.31 +0.1
1,291,663 + B158DRAFT_1252 0.32 -0.8
1,291,663 + B158DRAFT_1252 0.32 -0.7
1,291,663 + B158DRAFT_1252 0.32 -1.2
1,291,666 - B158DRAFT_1252 0.32 -0.1
1,291,666 - B158DRAFT_1252 0.32 -0.6
1,291,711 - B158DRAFT_1252 0.39 -0.6
1,291,711 - B158DRAFT_1252 0.39 -0.1
1,291,722 + B158DRAFT_1252 0.40 -0.4
1,291,722 + B158DRAFT_1252 0.40 +0.1
1,291,727 + B158DRAFT_1252 0.41 +0.3
1,291,730 - B158DRAFT_1252 0.41 -0.6
1,291,730 - B158DRAFT_1252 0.41 -1.1
1,291,735 - B158DRAFT_1252 0.42 -0.2
1,291,735 - B158DRAFT_1252 0.42 -0.4
1,291,821 + B158DRAFT_1252 0.54 -0.7
1,291,829 - B158DRAFT_1252 0.55 +1.1
1,291,829 - B158DRAFT_1252 0.55 +1.6
1,291,835 + B158DRAFT_1252 0.56 -0.7
1,291,843 - B158DRAFT_1252 0.57 +0.6
1,291,872 - B158DRAFT_1252 0.61 -0.2
1,291,886 - B158DRAFT_1252 0.63 +0.2
1,291,906 - B158DRAFT_1252 0.66 -0.1
1,291,908 + B158DRAFT_1252 0.67 -0.1
1,291,908 + B158DRAFT_1252 0.67 -0.7
1,291,908 + B158DRAFT_1252 0.67 -0.7
1,291,908 + B158DRAFT_1252 0.67 -0.3
1,291,913 + B158DRAFT_1252 0.67 -0.1
1,291,916 - B158DRAFT_1252 0.68 -0.3
1,291,921 - B158DRAFT_1252 0.68 -0.3
1,291,921 - B158DRAFT_1252 0.68 -0.9
1,291,942 + B158DRAFT_1252 0.71 -0.0
1,291,942 + B158DRAFT_1252 0.71 -0.7
1,291,942 + B158DRAFT_1252 0.71 -0.4
1,291,942 + B158DRAFT_1252 0.71 +0.1
1,291,945 - B158DRAFT_1252 0.72 +0.5
1,291,949 + B158DRAFT_1252 0.72 -0.3
1,291,950 - B158DRAFT_1252 0.72 -0.2
1,291,950 - B158DRAFT_1252 0.72 -0.7
1,291,950 - B158DRAFT_1252 0.72 -2.4
1,291,950 - B158DRAFT_1252 0.72 -0.0
1,291,950 - B158DRAFT_1252 0.72 -0.9
1,291,957 - B158DRAFT_1252 0.73 +0.1
1,291,959 + B158DRAFT_1252 0.74 -0.2
1,291,965 - B158DRAFT_1252 0.75 +0.2
1,291,965 - B158DRAFT_1252 0.75 -0.3
1,291,967 - B158DRAFT_1252 0.75 -0.4
1,292,000 + B158DRAFT_1252 0.80 +0.2
1,292,006 + B158DRAFT_1252 0.80 +0.3
1,292,006 + B158DRAFT_1252 0.80 -1.1
1,292,006 + B158DRAFT_1252 0.80 -0.6
1,292,014 - B158DRAFT_1252 0.82 -1.3
1,292,037 + B158DRAFT_1252 0.85 -1.2
1,292,045 - B158DRAFT_1252 0.86 +0.7
1,292,103 + +0.3
1,292,118 - +0.7
1,292,132 + +0.1
1,292,132 + +1.4
1,292,140 - -0.4
1,292,145 + +0.3
1,292,189 + -0.8
1,292,201 + +0.1
1,292,206 + +0.3
1,292,209 - -0.2
1,292,214 - -0.3
1,292,214 - -0.1
1,292,214 - -1.0
1,292,251 + B158DRAFT_1253 0.12 +0.2
1,292,288 + B158DRAFT_1253 0.16 -0.1

Or see this region's nucleotide sequence