Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0955

Experiment: m.b. Paraquat dichloride 0.0078125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0954 and B158DRAFT_0955 are separated by 1 nucleotidesB158DRAFT_0955 and B158DRAFT_0956 are separated by 385 nucleotides B158DRAFT_0954: B158DRAFT_0954 - diguanylate cyclase (GGDEF) domain, at 982,363 to 983,769 _0954 B158DRAFT_0955: B158DRAFT_0955 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 983,771 to 986,338 _0955 B158DRAFT_0956: B158DRAFT_0956 - dissimilatory nitrite reductase (NO-forming), copper type apoprotein, at 986,724 to 988,136 _0956 Position (kb) 983 984 985 986 987Strain fitness (log2 ratio) -2 -1 0 1at 982.792 kb on - strand, within B158DRAFT_0954at 982.802 kb on - strand, within B158DRAFT_0954at 982.807 kb on + strand, within B158DRAFT_0954at 982.807 kb on + strand, within B158DRAFT_0954at 982.807 kb on + strand, within B158DRAFT_0954at 982.807 kb on + strand, within B158DRAFT_0954at 982.937 kb on - strand, within B158DRAFT_0954at 982.972 kb on + strand, within B158DRAFT_0954at 983.004 kb on + strand, within B158DRAFT_0954at 983.009 kb on + strand, within B158DRAFT_0954at 983.009 kb on + strand, within B158DRAFT_0954at 983.009 kb on + strand, within B158DRAFT_0954at 983.009 kb on + strand, within B158DRAFT_0954at 983.017 kb on - strand, within B158DRAFT_0954at 983.017 kb on - strand, within B158DRAFT_0954at 983.017 kb on - strand, within B158DRAFT_0954at 983.027 kb on - strand, within B158DRAFT_0954at 983.064 kb on - strand, within B158DRAFT_0954at 983.082 kb on - strand, within B158DRAFT_0954at 983.116 kb on - strand, within B158DRAFT_0954at 983.227 kb on + strand, within B158DRAFT_0954at 983.285 kb on - strand, within B158DRAFT_0954at 983.638 kb on - strandat 983.644 kb on - strandat 983.652 kb on + strandat 983.652 kb on + strandat 983.654 kb on - strandat 983.660 kb on - strandat 983.710 kb on + strandat 983.783 kb on + strandat 984.015 kb on + strandat 984.154 kb on - strand, within B158DRAFT_0955at 984.154 kb on - strand, within B158DRAFT_0955at 984.154 kb on - strand, within B158DRAFT_0955at 984.156 kb on + strand, within B158DRAFT_0955at 984.164 kb on - strand, within B158DRAFT_0955at 984.172 kb on + strand, within B158DRAFT_0955at 984.172 kb on + strand, within B158DRAFT_0955at 984.180 kb on - strand, within B158DRAFT_0955at 984.207 kb on - strand, within B158DRAFT_0955at 984.255 kb on + strand, within B158DRAFT_0955at 984.308 kb on - strand, within B158DRAFT_0955at 984.309 kb on - strand, within B158DRAFT_0955at 984.310 kb on - strand, within B158DRAFT_0955at 984.310 kb on - strand, within B158DRAFT_0955at 984.515 kb on + strand, within B158DRAFT_0955at 984.522 kb on + strand, within B158DRAFT_0955at 984.534 kb on + strand, within B158DRAFT_0955at 984.566 kb on - strand, within B158DRAFT_0955at 984.663 kb on + strand, within B158DRAFT_0955at 984.752 kb on + strand, within B158DRAFT_0955at 984.752 kb on + strand, within B158DRAFT_0955at 984.756 kb on + strand, within B158DRAFT_0955at 984.809 kb on - strand, within B158DRAFT_0955at 984.817 kb on - strand, within B158DRAFT_0955at 984.858 kb on + strand, within B158DRAFT_0955at 984.866 kb on - strand, within B158DRAFT_0955at 984.866 kb on - strand, within B158DRAFT_0955at 984.866 kb on - strand, within B158DRAFT_0955at 985.061 kb on + strand, within B158DRAFT_0955at 985.061 kb on + strand, within B158DRAFT_0955at 985.071 kb on + strand, within B158DRAFT_0955at 985.298 kb on - strand, within B158DRAFT_0955at 985.395 kb on + strand, within B158DRAFT_0955at 985.395 kb on - strand, within B158DRAFT_0955at 985.403 kb on - strand, within B158DRAFT_0955at 985.403 kb on - strand, within B158DRAFT_0955at 985.453 kb on + strand, within B158DRAFT_0955at 985.592 kb on + strand, within B158DRAFT_0955at 985.658 kb on - strand, within B158DRAFT_0955at 985.658 kb on - strand, within B158DRAFT_0955at 985.658 kb on - strand, within B158DRAFT_0955at 985.658 kb on - strand, within B158DRAFT_0955at 985.690 kb on - strand, within B158DRAFT_0955at 985.756 kb on - strand, within B158DRAFT_0955at 985.811 kb on + strand, within B158DRAFT_0955at 985.811 kb on + strand, within B158DRAFT_0955at 985.827 kb on - strand, within B158DRAFT_0955at 985.836 kb on - strand, within B158DRAFT_0955at 985.855 kb on + strand, within B158DRAFT_0955at 985.900 kb on + strand, within B158DRAFT_0955at 985.908 kb on - strand, within B158DRAFT_0955at 986.020 kb on + strand, within B158DRAFT_0955at 986.025 kb on + strand, within B158DRAFT_0955at 986.032 kb on - strand, within B158DRAFT_0955at 986.079 kb on - strand, within B158DRAFT_0955at 986.109 kb on - strandat 986.138 kb on - strandat 986.197 kb on + strandat 986.203 kb on - strandat 986.205 kb on - strandat 986.217 kb on + strandat 986.252 kb on + strandat 986.252 kb on + strandat 986.260 kb on - strandat 986.281 kb on + strandat 986.281 kb on + strandat 986.478 kb on - strandat 986.657 kb on - strandat 986.726 kb on - strandat 986.769 kb on + strandat 986.777 kb on - strandat 986.783 kb on + strandat 986.844 kb on - strandat 986.872 kb on + strand, within B158DRAFT_0956at 986.899 kb on - strand, within B158DRAFT_0956at 986.917 kb on - strand, within B158DRAFT_0956at 986.939 kb on - strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 987.070 kb on - strand, within B158DRAFT_0956at 987.072 kb on - strand, within B158DRAFT_0956at 987.138 kb on + strand, within B158DRAFT_0956at 987.146 kb on - strand, within B158DRAFT_0956at 987.167 kb on - strand, within B158DRAFT_0956at 987.186 kb on + strand, within B158DRAFT_0956at 987.186 kb on + strand, within B158DRAFT_0956at 987.268 kb on + strand, within B158DRAFT_0956at 987.317 kb on - strand, within B158DRAFT_0956

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0078125 mg/ml
remove
982,792 - B158DRAFT_0954 0.30 +0.7
982,802 - B158DRAFT_0954 0.31 -0.8
982,807 + B158DRAFT_0954 0.32 -0.1
982,807 + B158DRAFT_0954 0.32 -0.3
982,807 + B158DRAFT_0954 0.32 -0.2
982,807 + B158DRAFT_0954 0.32 -0.2
982,937 - B158DRAFT_0954 0.41 -0.2
982,972 + B158DRAFT_0954 0.43 +0.6
983,004 + B158DRAFT_0954 0.46 +0.9
983,009 + B158DRAFT_0954 0.46 -0.1
983,009 + B158DRAFT_0954 0.46 -0.4
983,009 + B158DRAFT_0954 0.46 +0.2
983,009 + B158DRAFT_0954 0.46 -0.1
983,017 - B158DRAFT_0954 0.46 +0.2
983,017 - B158DRAFT_0954 0.46 -0.0
983,017 - B158DRAFT_0954 0.46 -1.1
983,027 - B158DRAFT_0954 0.47 -1.3
983,064 - B158DRAFT_0954 0.50 -0.7
983,082 - B158DRAFT_0954 0.51 -0.2
983,116 - B158DRAFT_0954 0.54 -0.4
983,227 + B158DRAFT_0954 0.61 -0.3
983,285 - B158DRAFT_0954 0.66 -0.6
983,638 - -0.1
983,644 - -0.4
983,652 + -0.9
983,652 + -0.2
983,654 - -0.2
983,660 - -1.1
983,710 + +0.8
983,783 + +0.3
984,015 + -0.2
984,154 - B158DRAFT_0955 0.15 -1.3
984,154 - B158DRAFT_0955 0.15 +0.3
984,154 - B158DRAFT_0955 0.15 +0.6
984,156 + B158DRAFT_0955 0.15 -0.8
984,164 - B158DRAFT_0955 0.15 -0.7
984,172 + B158DRAFT_0955 0.16 +0.0
984,172 + B158DRAFT_0955 0.16 +1.2
984,180 - B158DRAFT_0955 0.16 +0.7
984,207 - B158DRAFT_0955 0.17 -0.9
984,255 + B158DRAFT_0955 0.19 +0.6
984,308 - B158DRAFT_0955 0.21 +0.1
984,309 - B158DRAFT_0955 0.21 +0.3
984,310 - B158DRAFT_0955 0.21 -0.1
984,310 - B158DRAFT_0955 0.21 -0.8
984,515 + B158DRAFT_0955 0.29 +0.1
984,522 + B158DRAFT_0955 0.29 +0.0
984,534 + B158DRAFT_0955 0.30 -0.2
984,566 - B158DRAFT_0955 0.31 +0.0
984,663 + B158DRAFT_0955 0.35 -0.3
984,752 + B158DRAFT_0955 0.38 +0.2
984,752 + B158DRAFT_0955 0.38 -0.4
984,756 + B158DRAFT_0955 0.38 -0.4
984,809 - B158DRAFT_0955 0.40 -0.3
984,817 - B158DRAFT_0955 0.41 -0.2
984,858 + B158DRAFT_0955 0.42 -0.4
984,866 - B158DRAFT_0955 0.43 +0.3
984,866 - B158DRAFT_0955 0.43 -0.0
984,866 - B158DRAFT_0955 0.43 +0.2
985,061 + B158DRAFT_0955 0.50 +0.9
985,061 + B158DRAFT_0955 0.50 -0.1
985,071 + B158DRAFT_0955 0.51 +0.4
985,298 - B158DRAFT_0955 0.59 -0.3
985,395 + B158DRAFT_0955 0.63 -0.5
985,395 - B158DRAFT_0955 0.63 +0.2
985,403 - B158DRAFT_0955 0.64 -0.6
985,403 - B158DRAFT_0955 0.64 +0.5
985,453 + B158DRAFT_0955 0.65 -0.6
985,592 + B158DRAFT_0955 0.71 -1.0
985,658 - B158DRAFT_0955 0.73 -0.3
985,658 - B158DRAFT_0955 0.73 -0.4
985,658 - B158DRAFT_0955 0.73 -1.5
985,658 - B158DRAFT_0955 0.73 +0.4
985,690 - B158DRAFT_0955 0.75 -0.5
985,756 - B158DRAFT_0955 0.77 +0.1
985,811 + B158DRAFT_0955 0.79 +0.5
985,811 + B158DRAFT_0955 0.79 +0.3
985,827 - B158DRAFT_0955 0.80 -0.5
985,836 - B158DRAFT_0955 0.80 +0.1
985,855 + B158DRAFT_0955 0.81 -0.1
985,900 + B158DRAFT_0955 0.83 +0.0
985,908 - B158DRAFT_0955 0.83 +1.0
986,020 + B158DRAFT_0955 0.88 -1.0
986,025 + B158DRAFT_0955 0.88 -0.6
986,032 - B158DRAFT_0955 0.88 +0.0
986,079 - B158DRAFT_0955 0.90 -0.2
986,109 - -0.9
986,138 - +1.0
986,197 + -0.3
986,203 - -0.6
986,205 - +1.0
986,217 + -0.3
986,252 + +0.5
986,252 + -0.4
986,260 - +0.3
986,281 + +1.0
986,281 + -0.2
986,478 - +0.3
986,657 - +0.4
986,726 - -0.3
986,769 + +0.2
986,777 - -0.0
986,783 + -0.5
986,844 - -0.2
986,872 + B158DRAFT_0956 0.10 -1.0
986,899 - B158DRAFT_0956 0.12 -0.3
986,917 - B158DRAFT_0956 0.14 +0.2
986,939 - B158DRAFT_0956 0.15 -0.1
986,964 + B158DRAFT_0956 0.17 +0.0
986,964 + B158DRAFT_0956 0.17 -0.2
986,964 + B158DRAFT_0956 0.17 +0.3
986,964 + B158DRAFT_0956 0.17 -0.4
986,964 + B158DRAFT_0956 0.17 +0.0
986,964 + B158DRAFT_0956 0.17 -0.0
986,964 + B158DRAFT_0956 0.17 -0.0
986,964 + B158DRAFT_0956 0.17 -0.8
986,964 + B158DRAFT_0956 0.17 -0.2
986,964 + B158DRAFT_0956 0.17 -1.5
986,964 + B158DRAFT_0956 0.17 -0.3
986,964 + B158DRAFT_0956 0.17 -0.3
986,972 - B158DRAFT_0956 0.18 +0.4
986,972 - B158DRAFT_0956 0.18 -0.5
986,972 - B158DRAFT_0956 0.18 -0.0
986,972 - B158DRAFT_0956 0.18 -0.8
986,972 - B158DRAFT_0956 0.18 -0.0
986,972 - B158DRAFT_0956 0.18 -0.6
986,972 - B158DRAFT_0956 0.18 +0.1
986,972 - B158DRAFT_0956 0.18 -0.5
986,972 - B158DRAFT_0956 0.18 -0.4
986,972 - B158DRAFT_0956 0.18 -0.1
987,070 - B158DRAFT_0956 0.24 +0.3
987,072 - B158DRAFT_0956 0.25 -0.0
987,138 + B158DRAFT_0956 0.29 +0.3
987,146 - B158DRAFT_0956 0.30 -0.4
987,167 - B158DRAFT_0956 0.31 -0.3
987,186 + B158DRAFT_0956 0.33 -2.3
987,186 + B158DRAFT_0956 0.33 +0.0
987,268 + B158DRAFT_0956 0.38 +0.4
987,317 - B158DRAFT_0956 0.42 +0.0

Or see this region's nucleotide sequence