Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1949

Experiment: m.b. methylglyoxal 0.005 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1947 and B158DRAFT_1948 are separated by 30 nucleotidesB158DRAFT_1948 and B158DRAFT_1949 are separated by 71 nucleotidesB158DRAFT_1949 and B158DRAFT_1950 are separated by 42 nucleotides B158DRAFT_1947: B158DRAFT_1947 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 82,725 to 84,233 _1947 B158DRAFT_1948: B158DRAFT_1948 - ATPase, YjeE family, at 84,264 to 84,743 _1948 B158DRAFT_1949: B158DRAFT_1949 - N-acetylmuramoyl-L-alanine amidase, at 84,815 to 86,098 _1949 B158DRAFT_1950: B158DRAFT_1950 - DNA mismatch repair protein MutL, at 86,141 to 87,901 _1950 Position (kb) 84 85 86 87Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 83.882 kb on - strand, within B158DRAFT_1947at 84.022 kb on + strand, within B158DRAFT_1947at 84.027 kb on + strand, within B158DRAFT_1947at 84.055 kb on + strand, within B158DRAFT_1947at 84.069 kb on + strand, within B158DRAFT_1947at 84.082 kb on + strand, within B158DRAFT_1947at 84.082 kb on + strand, within B158DRAFT_1947at 84.082 kb on + strand, within B158DRAFT_1947at 84.095 kb on + strandat 84.095 kb on + strandat 84.095 kb on + strandat 84.095 kb on + strandat 84.095 kb on + strandat 84.095 kb on + strandat 84.269 kb on + strandat 84.738 kb on + strandat 84.803 kb on - strandat 84.818 kb on - strandat 84.913 kb on - strandat 84.913 kb on - strandat 84.986 kb on - strand, within B158DRAFT_1949at 84.993 kb on - strand, within B158DRAFT_1949at 85.143 kb on + strand, within B158DRAFT_1949at 85.213 kb on - strand, within B158DRAFT_1949at 85.247 kb on + strand, within B158DRAFT_1949at 85.247 kb on + strand, within B158DRAFT_1949at 85.415 kb on + strand, within B158DRAFT_1949at 85.423 kb on - strand, within B158DRAFT_1949at 85.442 kb on - strand, within B158DRAFT_1949at 85.444 kb on + strand, within B158DRAFT_1949at 85.476 kb on - strand, within B158DRAFT_1949at 85.528 kb on + strand, within B158DRAFT_1949at 85.528 kb on + strand, within B158DRAFT_1949at 85.528 kb on + strand, within B158DRAFT_1949at 85.528 kb on + strand, within B158DRAFT_1949at 85.536 kb on - strand, within B158DRAFT_1949at 85.536 kb on - strand, within B158DRAFT_1949at 85.571 kb on + strand, within B158DRAFT_1949at 85.574 kb on - strand, within B158DRAFT_1949at 85.576 kb on + strand, within B158DRAFT_1949at 85.593 kb on + strand, within B158DRAFT_1949at 85.594 kb on - strand, within B158DRAFT_1949at 85.594 kb on - strand, within B158DRAFT_1949at 85.601 kb on - strand, within B158DRAFT_1949at 85.601 kb on - strand, within B158DRAFT_1949at 85.601 kb on - strand, within B158DRAFT_1949at 85.601 kb on - strand, within B158DRAFT_1949at 85.601 kb on - strand, within B158DRAFT_1949at 85.604 kb on - strand, within B158DRAFT_1949at 85.629 kb on + strand, within B158DRAFT_1949at 85.637 kb on - strand, within B158DRAFT_1949at 85.674 kb on + strand, within B158DRAFT_1949at 85.674 kb on + strand, within B158DRAFT_1949at 85.674 kb on + strand, within B158DRAFT_1949at 85.674 kb on + strand, within B158DRAFT_1949at 85.682 kb on - strand, within B158DRAFT_1949at 85.682 kb on - strand, within B158DRAFT_1949at 85.692 kb on - strand, within B158DRAFT_1949at 85.799 kb on + strand, within B158DRAFT_1949at 85.807 kb on - strand, within B158DRAFT_1949at 85.840 kb on - strand, within B158DRAFT_1949at 85.899 kb on + strand, within B158DRAFT_1949at 85.899 kb on + strand, within B158DRAFT_1949at 85.907 kb on - strand, within B158DRAFT_1949at 85.907 kb on - strand, within B158DRAFT_1949at 85.907 kb on - strand, within B158DRAFT_1949at 85.982 kb on - strandat 85.984 kb on + strandat 85.984 kb on + strandat 85.984 kb on + strandat 85.992 kb on - strandat 85.992 kb on - strandat 85.992 kb on - strandat 85.992 kb on - strandat 85.992 kb on - strandat 85.992 kb on - strandat 86.021 kb on + strandat 86.021 kb on + strandat 86.029 kb on - strandat 86.029 kb on - strandat 86.029 kb on - strandat 86.203 kb on - strandat 86.203 kb on - strandat 86.289 kb on + strandat 86.294 kb on + strandat 86.294 kb on + strandat 86.302 kb on - strandat 86.318 kb on + strand, within B158DRAFT_1950at 86.319 kb on - strand, within B158DRAFT_1950at 86.326 kb on + strand, within B158DRAFT_1950at 86.326 kb on + strand, within B158DRAFT_1950at 86.348 kb on - strand, within B158DRAFT_1950at 86.432 kb on + strand, within B158DRAFT_1950at 86.432 kb on + strand, within B158DRAFT_1950at 86.440 kb on - strand, within B158DRAFT_1950at 86.440 kb on - strand, within B158DRAFT_1950at 86.440 kb on - strand, within B158DRAFT_1950at 86.500 kb on - strand, within B158DRAFT_1950at 86.562 kb on - strand, within B158DRAFT_1950at 86.685 kb on + strand, within B158DRAFT_1950at 86.703 kb on + strand, within B158DRAFT_1950at 86.733 kb on - strand, within B158DRAFT_1950at 86.786 kb on - strand, within B158DRAFT_1950at 86.824 kb on - strand, within B158DRAFT_1950at 86.826 kb on + strand, within B158DRAFT_1950at 86.826 kb on + strand, within B158DRAFT_1950at 86.826 kb on + strand, within B158DRAFT_1950at 86.826 kb on + strand, within B158DRAFT_1950at 86.826 kb on + strand, within B158DRAFT_1950at 86.826 kb on + strand, within B158DRAFT_1950at 86.826 kb on + strand, within B158DRAFT_1950at 86.834 kb on - strand, within B158DRAFT_1950at 86.916 kb on + strand, within B158DRAFT_1950at 86.924 kb on - strand, within B158DRAFT_1950at 86.932 kb on - strand, within B158DRAFT_1950at 86.972 kb on - strand, within B158DRAFT_1950at 87.010 kb on - strand, within B158DRAFT_1950at 87.039 kb on - strand, within B158DRAFT_1950at 87.081 kb on - strand, within B158DRAFT_1950

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.005 vol%
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83,882 - B158DRAFT_1947 0.77 -0.1
84,022 + B158DRAFT_1947 0.86 +1.0
84,027 + B158DRAFT_1947 0.86 +0.1
84,055 + B158DRAFT_1947 0.88 -0.5
84,069 + B158DRAFT_1947 0.89 +0.1
84,082 + B158DRAFT_1947 0.90 +1.7
84,082 + B158DRAFT_1947 0.90 -1.5
84,082 + B158DRAFT_1947 0.90 +0.3
84,095 + +0.7
84,095 + -0.2
84,095 + +0.6
84,095 + -1.1
84,095 + -2.5
84,095 + +0.4
84,269 + -1.0
84,738 + -0.2
84,803 - +1.3
84,818 - +0.2
84,913 - -0.0
84,913 - -0.7
84,986 - B158DRAFT_1949 0.13 -0.7
84,993 - B158DRAFT_1949 0.14 -1.3
85,143 + B158DRAFT_1949 0.26 -0.0
85,213 - B158DRAFT_1949 0.31 -0.4
85,247 + B158DRAFT_1949 0.34 -1.8
85,247 + B158DRAFT_1949 0.34 -0.0
85,415 + B158DRAFT_1949 0.47 +0.2
85,423 - B158DRAFT_1949 0.47 -0.4
85,442 - B158DRAFT_1949 0.49 -1.3
85,444 + B158DRAFT_1949 0.49 -0.5
85,476 - B158DRAFT_1949 0.51 +0.6
85,528 + B158DRAFT_1949 0.56 -0.9
85,528 + B158DRAFT_1949 0.56 -5.9
85,528 + B158DRAFT_1949 0.56 -0.4
85,528 + B158DRAFT_1949 0.56 -1.9
85,536 - B158DRAFT_1949 0.56 +0.0
85,536 - B158DRAFT_1949 0.56 +0.8
85,571 + B158DRAFT_1949 0.59 -0.4
85,574 - B158DRAFT_1949 0.59 -0.2
85,576 + B158DRAFT_1949 0.59 -0.7
85,593 + B158DRAFT_1949 0.61 -3.7
85,594 - B158DRAFT_1949 0.61 -0.4
85,594 - B158DRAFT_1949 0.61 -0.4
85,601 - B158DRAFT_1949 0.61 -0.2
85,601 - B158DRAFT_1949 0.61 +0.5
85,601 - B158DRAFT_1949 0.61 -0.2
85,601 - B158DRAFT_1949 0.61 +0.6
85,601 - B158DRAFT_1949 0.61 -2.2
85,604 - B158DRAFT_1949 0.61 -1.1
85,629 + B158DRAFT_1949 0.63 -1.2
85,637 - B158DRAFT_1949 0.64 +0.7
85,674 + B158DRAFT_1949 0.67 -0.2
85,674 + B158DRAFT_1949 0.67 -0.5
85,674 + B158DRAFT_1949 0.67 -0.3
85,674 + B158DRAFT_1949 0.67 -2.5
85,682 - B158DRAFT_1949 0.68 -0.2
85,682 - B158DRAFT_1949 0.68 -0.4
85,692 - B158DRAFT_1949 0.68 -1.0
85,799 + B158DRAFT_1949 0.77 -0.9
85,807 - B158DRAFT_1949 0.77 -0.1
85,840 - B158DRAFT_1949 0.80 +1.0
85,899 + B158DRAFT_1949 0.84 +0.9
85,899 + B158DRAFT_1949 0.84 -1.6
85,907 - B158DRAFT_1949 0.85 +1.6
85,907 - B158DRAFT_1949 0.85 +1.1
85,907 - B158DRAFT_1949 0.85 +1.7
85,982 - +1.4
85,984 + -3.9
85,984 + +0.1
85,984 + +0.0
85,992 - +1.0
85,992 - +1.7
85,992 - +0.3
85,992 - +0.9
85,992 - +1.3
85,992 - +0.9
86,021 + +0.7
86,021 + +1.3
86,029 - -1.4
86,029 - +1.4
86,029 - +1.7
86,203 - +1.3
86,203 - +1.5
86,289 + +1.3
86,294 + +1.3
86,294 + +1.3
86,302 - +1.3
86,318 + B158DRAFT_1950 0.10 +1.2
86,319 - B158DRAFT_1950 0.10 +1.8
86,326 + B158DRAFT_1950 0.11 +1.3
86,326 + B158DRAFT_1950 0.11 +1.5
86,348 - B158DRAFT_1950 0.12 +1.7
86,432 + B158DRAFT_1950 0.17 +1.3
86,432 + B158DRAFT_1950 0.17 +0.6
86,440 - B158DRAFT_1950 0.17 +0.9
86,440 - B158DRAFT_1950 0.17 +2.3
86,440 - B158DRAFT_1950 0.17 +2.3
86,500 - B158DRAFT_1950 0.20 +2.2
86,562 - B158DRAFT_1950 0.24 +1.3
86,685 + B158DRAFT_1950 0.31 +0.7
86,703 + B158DRAFT_1950 0.32 +1.5
86,733 - B158DRAFT_1950 0.34 +1.5
86,786 - B158DRAFT_1950 0.37 +1.8
86,824 - B158DRAFT_1950 0.39 +1.8
86,826 + B158DRAFT_1950 0.39 +1.6
86,826 + B158DRAFT_1950 0.39 +1.4
86,826 + B158DRAFT_1950 0.39 +1.3
86,826 + B158DRAFT_1950 0.39 +0.7
86,826 + B158DRAFT_1950 0.39 +1.6
86,826 + B158DRAFT_1950 0.39 +1.7
86,826 + B158DRAFT_1950 0.39 +0.8
86,834 - B158DRAFT_1950 0.39 +0.4
86,916 + B158DRAFT_1950 0.44 +1.9
86,924 - B158DRAFT_1950 0.44 -0.4
86,932 - B158DRAFT_1950 0.45 +1.9
86,972 - B158DRAFT_1950 0.47 +0.8
87,010 - B158DRAFT_1950 0.49 +1.1
87,039 - B158DRAFT_1950 0.51 +1.5
87,081 - B158DRAFT_1950 0.53 +2.0

Or see this region's nucleotide sequence