Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1929

Experiment: m.b. methylglyoxal 0.005 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1928 and B158DRAFT_1929 are separated by 30 nucleotidesB158DRAFT_1929 and B158DRAFT_1930 are separated by 34 nucleotidesB158DRAFT_1930 and B158DRAFT_1931 are separated by 143 nucleotides B158DRAFT_1928: B158DRAFT_1928 - Uncharacterized protein conserved in bacteria, at 64,243 to 65,277 _1928 B158DRAFT_1929: B158DRAFT_1929 - transcription elongation factor GreB, at 65,308 to 65,796 _1929 B158DRAFT_1930: B158DRAFT_1930 - hypothetical protein, at 65,831 to 66,043 _1930 B158DRAFT_1931: B158DRAFT_1931 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 66,187 to 67,422 _1931 Position (kb) 65 66Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 64.323 kb on + strandat 64.434 kb on - strand, within B158DRAFT_1928at 64.469 kb on - strand, within B158DRAFT_1928at 64.469 kb on - strand, within B158DRAFT_1928at 64.478 kb on - strand, within B158DRAFT_1928at 64.483 kb on - strand, within B158DRAFT_1928at 64.483 kb on - strand, within B158DRAFT_1928at 64.492 kb on - strand, within B158DRAFT_1928at 64.505 kb on + strand, within B158DRAFT_1928at 64.575 kb on - strand, within B158DRAFT_1928at 64.575 kb on - strand, within B158DRAFT_1928at 64.599 kb on - strand, within B158DRAFT_1928at 64.612 kb on + strand, within B158DRAFT_1928at 64.612 kb on + strand, within B158DRAFT_1928at 64.617 kb on + strand, within B158DRAFT_1928at 64.617 kb on + strand, within B158DRAFT_1928at 64.617 kb on + strand, within B158DRAFT_1928at 64.620 kb on - strand, within B158DRAFT_1928at 64.625 kb on - strand, within B158DRAFT_1928at 64.649 kb on - strand, within B158DRAFT_1928at 64.683 kb on + strand, within B158DRAFT_1928at 64.760 kb on + strand, within B158DRAFT_1928at 64.760 kb on + strand, within B158DRAFT_1928at 64.768 kb on - strand, within B158DRAFT_1928at 64.770 kb on + strand, within B158DRAFT_1928at 64.773 kb on - strand, within B158DRAFT_1928at 64.861 kb on + strand, within B158DRAFT_1928at 64.868 kb on + strand, within B158DRAFT_1928at 64.868 kb on + strand, within B158DRAFT_1928at 64.924 kb on + strand, within B158DRAFT_1928at 64.948 kb on + strand, within B158DRAFT_1928at 64.948 kb on + strand, within B158DRAFT_1928at 64.949 kb on + strand, within B158DRAFT_1928at 64.956 kb on - strand, within B158DRAFT_1928at 64.967 kb on + strand, within B158DRAFT_1928at 65.087 kb on - strand, within B158DRAFT_1928at 65.164 kb on - strand, within B158DRAFT_1928at 65.169 kb on - strand, within B158DRAFT_1928at 65.176 kb on + strandat 65.256 kb on + strandat 65.279 kb on - strandat 65.294 kb on + strandat 65.322 kb on + strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.353 kb on - strandat 65.353 kb on - strandat 65.373 kb on + strand, within B158DRAFT_1929at 65.381 kb on - strand, within B158DRAFT_1929at 65.427 kb on - strand, within B158DRAFT_1929at 65.458 kb on - strand, within B158DRAFT_1929at 65.474 kb on - strand, within B158DRAFT_1929at 65.578 kb on + strand, within B158DRAFT_1929at 65.837 kb on - strandat 66.060 kb on + strandat 66.068 kb on - strandat 66.183 kb on + strandat 66.183 kb on + strandat 66.190 kb on - strandat 66.191 kb on - strandat 66.191 kb on - strandat 66.191 kb on - strandat 66.202 kb on - strandat 66.281 kb on - strandat 66.291 kb on + strandat 66.306 kb on - strandat 66.358 kb on + strand, within B158DRAFT_1931at 66.370 kb on - strand, within B158DRAFT_1931at 66.376 kb on - strand, within B158DRAFT_1931at 66.414 kb on + strand, within B158DRAFT_1931at 66.511 kb on - strand, within B158DRAFT_1931at 66.520 kb on + strand, within B158DRAFT_1931at 66.528 kb on - strand, within B158DRAFT_1931at 66.600 kb on - strand, within B158DRAFT_1931at 66.607 kb on - strand, within B158DRAFT_1931at 66.647 kb on - strand, within B158DRAFT_1931at 66.649 kb on + strand, within B158DRAFT_1931at 66.657 kb on - strand, within B158DRAFT_1931at 66.662 kb on + strand, within B158DRAFT_1931at 66.680 kb on - strand, within B158DRAFT_1931at 66.683 kb on - strand, within B158DRAFT_1931at 66.732 kb on + strand, within B158DRAFT_1931at 66.732 kb on + strand, within B158DRAFT_1931at 66.740 kb on - strand, within B158DRAFT_1931at 66.740 kb on - strand, within B158DRAFT_1931at 66.740 kb on - strand, within B158DRAFT_1931at 66.754 kb on + strand, within B158DRAFT_1931at 66.754 kb on + strand, within B158DRAFT_1931

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.005 vol%
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64,323 + -0.0
64,434 - B158DRAFT_1928 0.18 +0.2
64,469 - B158DRAFT_1928 0.22 +1.1
64,469 - B158DRAFT_1928 0.22 -0.7
64,478 - B158DRAFT_1928 0.23 -0.0
64,483 - B158DRAFT_1928 0.23 -0.8
64,483 - B158DRAFT_1928 0.23 +1.3
64,492 - B158DRAFT_1928 0.24 -1.6
64,505 + B158DRAFT_1928 0.25 -0.2
64,575 - B158DRAFT_1928 0.32 -0.7
64,575 - B158DRAFT_1928 0.32 -2.0
64,599 - B158DRAFT_1928 0.34 -0.1
64,612 + B158DRAFT_1928 0.36 -2.2
64,612 + B158DRAFT_1928 0.36 -0.7
64,617 + B158DRAFT_1928 0.36 -0.2
64,617 + B158DRAFT_1928 0.36 -1.5
64,617 + B158DRAFT_1928 0.36 +0.4
64,620 - B158DRAFT_1928 0.36 +0.1
64,625 - B158DRAFT_1928 0.37 -2.4
64,649 - B158DRAFT_1928 0.39 +1.8
64,683 + B158DRAFT_1928 0.43 -0.0
64,760 + B158DRAFT_1928 0.50 +0.9
64,760 + B158DRAFT_1928 0.50 +0.6
64,768 - B158DRAFT_1928 0.51 -2.1
64,770 + B158DRAFT_1928 0.51 -0.2
64,773 - B158DRAFT_1928 0.51 -0.7
64,861 + B158DRAFT_1928 0.60 +0.1
64,868 + B158DRAFT_1928 0.60 +0.2
64,868 + B158DRAFT_1928 0.60 -1.5
64,924 + B158DRAFT_1928 0.66 +0.3
64,948 + B158DRAFT_1928 0.68 +0.0
64,948 + B158DRAFT_1928 0.68 +0.1
64,949 + B158DRAFT_1928 0.68 -0.9
64,956 - B158DRAFT_1928 0.69 -0.4
64,967 + B158DRAFT_1928 0.70 -0.2
65,087 - B158DRAFT_1928 0.82 -0.8
65,164 - B158DRAFT_1928 0.89 -0.8
65,169 - B158DRAFT_1928 0.89 -0.4
65,176 + -0.1
65,256 + +0.2
65,279 - +0.4
65,294 + +1.2
65,322 + +0.6
65,345 + +0.5
65,345 + +1.0
65,345 + +0.5
65,345 + +0.7
65,353 - -0.4
65,353 - -0.1
65,373 + B158DRAFT_1929 0.13 +0.0
65,381 - B158DRAFT_1929 0.15 +0.4
65,427 - B158DRAFT_1929 0.24 +0.1
65,458 - B158DRAFT_1929 0.31 +1.0
65,474 - B158DRAFT_1929 0.34 -0.1
65,578 + B158DRAFT_1929 0.55 +0.3
65,837 - +0.4
66,060 + -0.6
66,068 - +0.6
66,183 + +1.8
66,183 + +0.5
66,190 - -2.3
66,191 - -2.6
66,191 - -1.8
66,191 - -4.5
66,202 - -1.2
66,281 - -2.2
66,291 + -2.3
66,306 - -3.0
66,358 + B158DRAFT_1931 0.14 -1.1
66,370 - B158DRAFT_1931 0.15 -2.8
66,376 - B158DRAFT_1931 0.15 -2.0
66,414 + B158DRAFT_1931 0.18 -4.8
66,511 - B158DRAFT_1931 0.26 -3.8
66,520 + B158DRAFT_1931 0.27 -2.5
66,528 - B158DRAFT_1931 0.28 -2.7
66,600 - B158DRAFT_1931 0.33 -2.6
66,607 - B158DRAFT_1931 0.34 -2.8
66,647 - B158DRAFT_1931 0.37 -2.5
66,649 + B158DRAFT_1931 0.37 -2.5
66,657 - B158DRAFT_1931 0.38 -1.4
66,662 + B158DRAFT_1931 0.38 -2.3
66,680 - B158DRAFT_1931 0.40 -2.9
66,683 - B158DRAFT_1931 0.40 -6.6
66,732 + B158DRAFT_1931 0.44 -2.4
66,732 + B158DRAFT_1931 0.44 -2.5
66,740 - B158DRAFT_1931 0.45 -1.4
66,740 - B158DRAFT_1931 0.45 -1.9
66,740 - B158DRAFT_1931 0.45 -2.6
66,754 + B158DRAFT_1931 0.46 -2.8
66,754 + B158DRAFT_1931 0.46 -4.9

Or see this region's nucleotide sequence