Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0725

Experiment: m.b. methylglyoxal 0.005 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0724 and B158DRAFT_0725 are separated by 172 nucleotidesB158DRAFT_0725 and B158DRAFT_0726 are separated by 195 nucleotidesB158DRAFT_0726 and B158DRAFT_0727 are separated by 6 nucleotides B158DRAFT_0724: B158DRAFT_0724 - diguanylate cyclase (GGDEF) domain, at 725,328 to 727,466 _0724 B158DRAFT_0725: B158DRAFT_0725 - GTP-binding protein TypA/BipA, at 727,639 to 729,462 _0725 B158DRAFT_0726: B158DRAFT_0726 - hypothetical protein, at 729,658 to 730,026 _0726 B158DRAFT_0727: B158DRAFT_0727 - D-tyrosyl-tRNA(Tyr) deacylase, at 730,033 to 730,470 _0727 Position (kb) 727 728 729 730Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 726.705 kb on + strand, within B158DRAFT_0724at 726.857 kb on + strand, within B158DRAFT_0724at 726.865 kb on - strand, within B158DRAFT_0724at 727.048 kb on - strand, within B158DRAFT_0724at 727.091 kb on + strand, within B158DRAFT_0724at 727.091 kb on + strand, within B158DRAFT_0724at 727.091 kb on + strand, within B158DRAFT_0724at 727.091 kb on + strand, within B158DRAFT_0724at 727.099 kb on - strand, within B158DRAFT_0724at 727.099 kb on - strand, within B158DRAFT_0724at 727.339 kb on + strandat 727.347 kb on - strandat 727.362 kb on - strandat 727.485 kb on + strandat 727.486 kb on - strandat 727.603 kb on - strandat 727.681 kb on + strandat 727.730 kb on + strandat 727.870 kb on - strand, within B158DRAFT_0725at 727.921 kb on + strand, within B158DRAFT_0725at 727.921 kb on + strand, within B158DRAFT_0725at 727.921 kb on + strand, within B158DRAFT_0725at 727.921 kb on + strand, within B158DRAFT_0725at 727.921 kb on + strand, within B158DRAFT_0725at 727.921 kb on + strand, within B158DRAFT_0725at 727.921 kb on + strand, within B158DRAFT_0725at 727.921 kb on + strand, within B158DRAFT_0725at 727.921 kb on + strand, within B158DRAFT_0725at 727.929 kb on - strand, within B158DRAFT_0725at 727.929 kb on - strand, within B158DRAFT_0725at 727.950 kb on + strand, within B158DRAFT_0725at 727.950 kb on - strand, within B158DRAFT_0725at 728.052 kb on - strand, within B158DRAFT_0725at 728.124 kb on + strand, within B158DRAFT_0725at 728.124 kb on + strand, within B158DRAFT_0725at 728.145 kb on - strand, within B158DRAFT_0725at 728.179 kb on - strand, within B158DRAFT_0725at 728.277 kb on - strand, within B158DRAFT_0725at 728.405 kb on - strand, within B158DRAFT_0725at 728.406 kb on - strand, within B158DRAFT_0725at 728.567 kb on - strand, within B158DRAFT_0725at 728.568 kb on - strand, within B158DRAFT_0725at 728.574 kb on + strand, within B158DRAFT_0725at 728.605 kb on + strand, within B158DRAFT_0725at 728.675 kb on + strand, within B158DRAFT_0725at 728.698 kb on + strand, within B158DRAFT_0725at 728.703 kb on + strand, within B158DRAFT_0725at 728.733 kb on - strand, within B158DRAFT_0725at 728.767 kb on + strand, within B158DRAFT_0725at 728.824 kb on - strand, within B158DRAFT_0725at 728.843 kb on - strand, within B158DRAFT_0725at 728.857 kb on - strand, within B158DRAFT_0725at 728.869 kb on + strand, within B158DRAFT_0725at 728.869 kb on + strand, within B158DRAFT_0725at 728.877 kb on - strand, within B158DRAFT_0725at 728.887 kb on - strand, within B158DRAFT_0725at 728.887 kb on - strand, within B158DRAFT_0725at 728.909 kb on - strand, within B158DRAFT_0725at 728.911 kb on + strand, within B158DRAFT_0725at 728.943 kb on - strand, within B158DRAFT_0725at 728.972 kb on + strand, within B158DRAFT_0725at 728.972 kb on + strand, within B158DRAFT_0725at 728.980 kb on - strand, within B158DRAFT_0725at 729.041 kb on + strand, within B158DRAFT_0725at 729.049 kb on - strand, within B158DRAFT_0725at 729.049 kb on - strand, within B158DRAFT_0725at 729.060 kb on + strand, within B158DRAFT_0725at 729.068 kb on - strand, within B158DRAFT_0725at 729.068 kb on - strand, within B158DRAFT_0725at 729.124 kb on + strand, within B158DRAFT_0725at 729.129 kb on + strand, within B158DRAFT_0725at 729.190 kb on + strand, within B158DRAFT_0725at 729.290 kb on - strandat 729.311 kb on - strandat 729.311 kb on - strandat 729.369 kb on + strandat 729.369 kb on + strandat 729.377 kb on - strandat 729.389 kb on + strandat 729.745 kb on + strand, within B158DRAFT_0726at 729.802 kb on - strand, within B158DRAFT_0726at 729.804 kb on + strand, within B158DRAFT_0726at 729.834 kb on + strand, within B158DRAFT_0726at 729.834 kb on + strand, within B158DRAFT_0726at 729.849 kb on + strand, within B158DRAFT_0726at 730.117 kb on - strand, within B158DRAFT_0727at 730.363 kb on + strand, within B158DRAFT_0727at 730.368 kb on + strand, within B158DRAFT_0727at 730.368 kb on + strand, within B158DRAFT_0727at 730.368 kb on + strand, within B158DRAFT_0727at 730.404 kb on + strand, within B158DRAFT_0727

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.005 vol%
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726,705 + B158DRAFT_0724 0.64 +0.8
726,857 + B158DRAFT_0724 0.71 +1.3
726,865 - B158DRAFT_0724 0.72 +1.0
727,048 - B158DRAFT_0724 0.80 +0.5
727,091 + B158DRAFT_0724 0.82 +1.1
727,091 + B158DRAFT_0724 0.82 +0.6
727,091 + B158DRAFT_0724 0.82 +1.0
727,091 + B158DRAFT_0724 0.82 -0.8
727,099 - B158DRAFT_0724 0.83 +1.0
727,099 - B158DRAFT_0724 0.83 -0.1
727,339 + +0.1
727,347 - +1.9
727,362 - -0.5
727,485 + +1.0
727,486 - -0.1
727,603 - -0.0
727,681 + +0.2
727,730 + -0.6
727,870 - B158DRAFT_0725 0.13 +0.6
727,921 + B158DRAFT_0725 0.15 -1.6
727,921 + B158DRAFT_0725 0.15 +1.3
727,921 + B158DRAFT_0725 0.15 +0.9
727,921 + B158DRAFT_0725 0.15 -0.8
727,921 + B158DRAFT_0725 0.15 -1.1
727,921 + B158DRAFT_0725 0.15 +0.8
727,921 + B158DRAFT_0725 0.15 -0.7
727,921 + B158DRAFT_0725 0.15 -1.5
727,921 + B158DRAFT_0725 0.15 -4.4
727,929 - B158DRAFT_0725 0.16 +0.4
727,929 - B158DRAFT_0725 0.16 +0.9
727,950 + B158DRAFT_0725 0.17 +0.6
727,950 - B158DRAFT_0725 0.17 +1.1
728,052 - B158DRAFT_0725 0.23 +0.5
728,124 + B158DRAFT_0725 0.27 +1.7
728,124 + B158DRAFT_0725 0.27 +0.7
728,145 - B158DRAFT_0725 0.28 +0.1
728,179 - B158DRAFT_0725 0.30 -2.5
728,277 - B158DRAFT_0725 0.35 +0.6
728,405 - B158DRAFT_0725 0.42 +0.4
728,406 - B158DRAFT_0725 0.42 +3.1
728,567 - B158DRAFT_0725 0.51 +0.7
728,568 - B158DRAFT_0725 0.51 +0.1
728,574 + B158DRAFT_0725 0.51 -0.5
728,605 + B158DRAFT_0725 0.53 -1.0
728,675 + B158DRAFT_0725 0.57 +0.7
728,698 + B158DRAFT_0725 0.58 +0.0
728,703 + B158DRAFT_0725 0.58 +0.5
728,733 - B158DRAFT_0725 0.60 -1.2
728,767 + B158DRAFT_0725 0.62 +0.1
728,824 - B158DRAFT_0725 0.65 +0.8
728,843 - B158DRAFT_0725 0.66 -0.4
728,857 - B158DRAFT_0725 0.67 +0.5
728,869 + B158DRAFT_0725 0.67 +0.3
728,869 + B158DRAFT_0725 0.67 -0.4
728,877 - B158DRAFT_0725 0.68 +1.0
728,887 - B158DRAFT_0725 0.68 -0.3
728,887 - B158DRAFT_0725 0.68 +0.2
728,909 - B158DRAFT_0725 0.70 +1.0
728,911 + B158DRAFT_0725 0.70 -0.5
728,943 - B158DRAFT_0725 0.71 +0.4
728,972 + B158DRAFT_0725 0.73 -0.1
728,972 + B158DRAFT_0725 0.73 -0.5
728,980 - B158DRAFT_0725 0.74 +0.6
729,041 + B158DRAFT_0725 0.77 -0.1
729,049 - B158DRAFT_0725 0.77 +0.4
729,049 - B158DRAFT_0725 0.77 -2.1
729,060 + B158DRAFT_0725 0.78 +0.9
729,068 - B158DRAFT_0725 0.78 +0.4
729,068 - B158DRAFT_0725 0.78 -0.1
729,124 + B158DRAFT_0725 0.81 -0.1
729,129 + B158DRAFT_0725 0.82 -0.5
729,190 + B158DRAFT_0725 0.85 -0.2
729,290 - +0.5
729,311 - +1.8
729,311 - +0.1
729,369 + -1.7
729,369 + -0.2
729,377 - -2.0
729,389 + +1.1
729,745 + B158DRAFT_0726 0.24 +0.9
729,802 - B158DRAFT_0726 0.39 +1.1
729,804 + B158DRAFT_0726 0.40 +0.4
729,834 + B158DRAFT_0726 0.48 +0.4
729,834 + B158DRAFT_0726 0.48 +1.1
729,849 + B158DRAFT_0726 0.52 +0.6
730,117 - B158DRAFT_0727 0.19 -2.7
730,363 + B158DRAFT_0727 0.75 +0.2
730,368 + B158DRAFT_0727 0.76 +0.2
730,368 + B158DRAFT_0727 0.76 +0.1
730,368 + B158DRAFT_0727 0.76 +0.8
730,404 + B158DRAFT_0727 0.85 -2.9

Or see this region's nucleotide sequence