Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0056

Experiment: m.b. methylglyoxal 0.005 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0054 and B158DRAFT_0055 are separated by 10 nucleotidesB158DRAFT_0055 and B158DRAFT_0056 are separated by 213 nucleotidesB158DRAFT_0056 and B158DRAFT_0057 are separated by 59 nucleotidesB158DRAFT_0057 and B158DRAFT_0058 are separated by 51 nucleotides B158DRAFT_0054: B158DRAFT_0054 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 50,463 to 53,075 _0054 B158DRAFT_0055: B158DRAFT_0055 - sugar fermentation stimulation protein, at 53,086 to 53,811 _0055 B158DRAFT_0056: B158DRAFT_0056 - transcriptional regulator, TraR/DksA family, at 54,025 to 54,471 _0056 B158DRAFT_0057: B158DRAFT_0057 - glutamyl-queuosine tRNA(Asp) synthetase, at 54,531 to 55,406 _0057 B158DRAFT_0058: B158DRAFT_0058 - poly(A) polymerase, at 55,458 to 56,828 _0058 Position (kb) 54 55Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 53.048 kb on + strandat 53.139 kb on + strandat 53.198 kb on - strand, within B158DRAFT_0055at 53.234 kb on - strand, within B158DRAFT_0055at 53.340 kb on - strand, within B158DRAFT_0055at 53.373 kb on - strand, within B158DRAFT_0055at 53.385 kb on + strand, within B158DRAFT_0055at 53.385 kb on + strand, within B158DRAFT_0055at 53.385 kb on + strand, within B158DRAFT_0055at 53.393 kb on - strand, within B158DRAFT_0055at 53.486 kb on - strand, within B158DRAFT_0055at 53.514 kb on - strand, within B158DRAFT_0055at 53.526 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.621 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.653 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.661 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.669 kb on + strand, within B158DRAFT_0055at 53.672 kb on - strand, within B158DRAFT_0055at 53.752 kb on + strandat 53.914 kb on + strandat 54.198 kb on - strand, within B158DRAFT_0056at 54.221 kb on + strand, within B158DRAFT_0056at 54.343 kb on + strand, within B158DRAFT_0056at 54.459 kb on + strandat 54.482 kb on - strandat 54.487 kb on - strandat 54.491 kb on + strandat 54.494 kb on - strandat 54.494 kb on - strandat 54.519 kb on - strandat 54.591 kb on + strandat 54.594 kb on + strandat 54.717 kb on + strand, within B158DRAFT_0057at 54.725 kb on - strand, within B158DRAFT_0057at 54.733 kb on + strand, within B158DRAFT_0057at 54.741 kb on - strand, within B158DRAFT_0057at 54.759 kb on + strand, within B158DRAFT_0057at 54.769 kb on + strand, within B158DRAFT_0057at 54.769 kb on + strand, within B158DRAFT_0057at 54.769 kb on + strand, within B158DRAFT_0057at 54.769 kb on + strand, within B158DRAFT_0057at 54.777 kb on - strand, within B158DRAFT_0057at 54.777 kb on - strand, within B158DRAFT_0057at 54.777 kb on - strand, within B158DRAFT_0057at 54.777 kb on - strand, within B158DRAFT_0057at 54.814 kb on + strand, within B158DRAFT_0057at 54.814 kb on - strand, within B158DRAFT_0057at 54.938 kb on + strand, within B158DRAFT_0057at 54.939 kb on - strand, within B158DRAFT_0057at 55.058 kb on + strand, within B158DRAFT_0057at 55.063 kb on + strand, within B158DRAFT_0057at 55.063 kb on + strand, within B158DRAFT_0057at 55.063 kb on + strand, within B158DRAFT_0057at 55.071 kb on - strand, within B158DRAFT_0057at 55.073 kb on + strand, within B158DRAFT_0057at 55.073 kb on + strand, within B158DRAFT_0057at 55.081 kb on - strand, within B158DRAFT_0057at 55.083 kb on - strand, within B158DRAFT_0057at 55.096 kb on + strand, within B158DRAFT_0057at 55.109 kb on + strand, within B158DRAFT_0057at 55.109 kb on + strand, within B158DRAFT_0057at 55.111 kb on + strand, within B158DRAFT_0057at 55.111 kb on + strand, within B158DRAFT_0057at 55.119 kb on - strand, within B158DRAFT_0057at 55.143 kb on + strand, within B158DRAFT_0057at 55.143 kb on + strand, within B158DRAFT_0057at 55.143 kb on + strand, within B158DRAFT_0057at 55.143 kb on + strand, within B158DRAFT_0057at 55.143 kb on + strand, within B158DRAFT_0057at 55.143 kb on + strand, within B158DRAFT_0057at 55.151 kb on - strand, within B158DRAFT_0057at 55.151 kb on - strand, within B158DRAFT_0057at 55.151 kb on - strand, within B158DRAFT_0057at 55.151 kb on - strand, within B158DRAFT_0057at 55.151 kb on - strand, within B158DRAFT_0057at 55.151 kb on - strand, within B158DRAFT_0057at 55.158 kb on + strand, within B158DRAFT_0057at 55.166 kb on - strand, within B158DRAFT_0057at 55.176 kb on - strand, within B158DRAFT_0057at 55.231 kb on - strand, within B158DRAFT_0057at 55.245 kb on - strand, within B158DRAFT_0057at 55.257 kb on + strand, within B158DRAFT_0057at 55.360 kb on + strandat 55.370 kb on + strandat 55.432 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.005 vol%
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53,048 + +0.5
53,139 + +1.1
53,198 - B158DRAFT_0055 0.15 +0.5
53,234 - B158DRAFT_0055 0.20 +0.4
53,340 - B158DRAFT_0055 0.35 -0.6
53,373 - B158DRAFT_0055 0.40 +0.9
53,385 + B158DRAFT_0055 0.41 +0.0
53,385 + B158DRAFT_0055 0.41 +0.6
53,385 + B158DRAFT_0055 0.41 -0.4
53,393 - B158DRAFT_0055 0.42 +0.1
53,486 - B158DRAFT_0055 0.55 +0.9
53,514 - B158DRAFT_0055 0.59 +0.4
53,526 + B158DRAFT_0055 0.61 +0.0
53,613 + B158DRAFT_0055 0.73 +1.4
53,613 + B158DRAFT_0055 0.73 +0.4
53,613 + B158DRAFT_0055 0.73 +0.6
53,613 + B158DRAFT_0055 0.73 -0.6
53,613 + B158DRAFT_0055 0.73 +0.0
53,613 + B158DRAFT_0055 0.73 -0.1
53,621 - B158DRAFT_0055 0.74 +0.5
53,634 - B158DRAFT_0055 0.75 +0.4
53,634 - B158DRAFT_0055 0.75 +1.5
53,634 - B158DRAFT_0055 0.75 +0.3
53,634 - B158DRAFT_0055 0.75 +0.4
53,634 - B158DRAFT_0055 0.75 +0.7
53,653 + B158DRAFT_0055 0.78 +1.1
53,655 + B158DRAFT_0055 0.78 -0.6
53,655 + B158DRAFT_0055 0.78 +0.4
53,655 + B158DRAFT_0055 0.78 +0.8
53,655 + B158DRAFT_0055 0.78 +1.1
53,655 + B158DRAFT_0055 0.78 +1.2
53,655 + B158DRAFT_0055 0.78 +1.6
53,655 + B158DRAFT_0055 0.78 +0.4
53,655 + B158DRAFT_0055 0.78 +0.6
53,661 - B158DRAFT_0055 0.79 +1.0
53,663 - B158DRAFT_0055 0.79 -0.1
53,663 - B158DRAFT_0055 0.79 +1.2
53,663 - B158DRAFT_0055 0.79 +1.0
53,663 - B158DRAFT_0055 0.79 +2.2
53,663 - B158DRAFT_0055 0.79 +3.1
53,663 - B158DRAFT_0055 0.79 +0.0
53,663 - B158DRAFT_0055 0.79 +1.0
53,669 + B158DRAFT_0055 0.80 -0.3
53,672 - B158DRAFT_0055 0.81 +1.8
53,752 + +0.8
53,914 + -1.0
54,198 - B158DRAFT_0056 0.39 -1.3
54,221 + B158DRAFT_0056 0.44 -1.6
54,343 + B158DRAFT_0056 0.71 -3.8
54,459 + +0.5
54,482 - +0.2
54,487 - +0.5
54,491 + +0.9
54,494 - -0.4
54,494 - +0.5
54,519 - +0.1
54,591 + +0.7
54,594 + -2.9
54,717 + B158DRAFT_0057 0.21 -0.1
54,725 - B158DRAFT_0057 0.22 +0.6
54,733 + B158DRAFT_0057 0.23 +0.2
54,741 - B158DRAFT_0057 0.24 +0.1
54,759 + B158DRAFT_0057 0.26 +0.8
54,769 + B158DRAFT_0057 0.27 -0.6
54,769 + B158DRAFT_0057 0.27 -0.2
54,769 + B158DRAFT_0057 0.27 -0.0
54,769 + B158DRAFT_0057 0.27 +0.1
54,777 - B158DRAFT_0057 0.28 +0.6
54,777 - B158DRAFT_0057 0.28 +1.3
54,777 - B158DRAFT_0057 0.28 +0.9
54,777 - B158DRAFT_0057 0.28 -0.5
54,814 + B158DRAFT_0057 0.32 +0.8
54,814 - B158DRAFT_0057 0.32 +0.9
54,938 + B158DRAFT_0057 0.46 -0.0
54,939 - B158DRAFT_0057 0.47 +0.3
55,058 + B158DRAFT_0057 0.60 +1.4
55,063 + B158DRAFT_0057 0.61 +0.1
55,063 + B158DRAFT_0057 0.61 +1.6
55,063 + B158DRAFT_0057 0.61 +0.3
55,071 - B158DRAFT_0057 0.62 -0.6
55,073 + B158DRAFT_0057 0.62 +0.7
55,073 + B158DRAFT_0057 0.62 +0.6
55,081 - B158DRAFT_0057 0.63 +0.0
55,083 - B158DRAFT_0057 0.63 +0.1
55,096 + B158DRAFT_0057 0.64 +0.7
55,109 + B158DRAFT_0057 0.66 +1.2
55,109 + B158DRAFT_0057 0.66 -1.3
55,111 + B158DRAFT_0057 0.66 -2.3
55,111 + B158DRAFT_0057 0.66 +1.9
55,119 - B158DRAFT_0057 0.67 -0.1
55,143 + B158DRAFT_0057 0.70 -0.5
55,143 + B158DRAFT_0057 0.70 +0.1
55,143 + B158DRAFT_0057 0.70 +0.5
55,143 + B158DRAFT_0057 0.70 -0.5
55,143 + B158DRAFT_0057 0.70 +0.4
55,143 + B158DRAFT_0057 0.70 +0.8
55,151 - B158DRAFT_0057 0.71 +0.8
55,151 - B158DRAFT_0057 0.71 -0.4
55,151 - B158DRAFT_0057 0.71 +1.8
55,151 - B158DRAFT_0057 0.71 -0.1
55,151 - B158DRAFT_0057 0.71 -5.1
55,151 - B158DRAFT_0057 0.71 -0.7
55,158 + B158DRAFT_0057 0.72 +0.5
55,166 - B158DRAFT_0057 0.72 +0.1
55,176 - B158DRAFT_0057 0.74 -0.5
55,231 - B158DRAFT_0057 0.80 +1.4
55,245 - B158DRAFT_0057 0.82 +0.6
55,257 + B158DRAFT_0057 0.83 +0.4
55,360 + +0.2
55,370 + +0.4
55,432 + +0.1

Or see this region's nucleotide sequence