Experiment: m.b. Gentamicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1797 and B158DRAFT_1798 are separated by 79 nucleotides B158DRAFT_1798 and B158DRAFT_1799 are separated by 125 nucleotides
B158DRAFT_1797: B158DRAFT_1797 - sodium/proton antiporter, CPA1 family (TC 2.A.36), at 1,891,150 to 1,893,021
_1797
B158DRAFT_1798: B158DRAFT_1798 - diguanylate cyclase (GGDEF) domain, at 1,893,101 to 1,895,113
_1798
B158DRAFT_1799: B158DRAFT_1799 - hypothetical protein, at 1,895,239 to 1,896,567
_1799
Position (kb)
1893
1894
1895
1896 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1892.116 kb on - strand, within B158DRAFT_1797 at 1892.161 kb on - strand, within B158DRAFT_1797 at 1892.220 kb on + strand, within B158DRAFT_1797 at 1892.220 kb on + strand, within B158DRAFT_1797 at 1892.228 kb on - strand, within B158DRAFT_1797 at 1892.228 kb on - strand, within B158DRAFT_1797 at 1892.240 kb on - strand, within B158DRAFT_1797 at 1892.242 kb on + strand, within B158DRAFT_1797 at 1892.250 kb on - strand, within B158DRAFT_1797 at 1892.316 kb on + strand, within B158DRAFT_1797 at 1892.318 kb on + strand, within B158DRAFT_1797 at 1892.318 kb on + strand, within B158DRAFT_1797 at 1892.318 kb on + strand, within B158DRAFT_1797 at 1892.326 kb on - strand, within B158DRAFT_1797 at 1892.326 kb on - strand, within B158DRAFT_1797 at 1892.380 kb on - strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.558 kb on - strand, within B158DRAFT_1797 at 1892.558 kb on - strand, within B158DRAFT_1797 at 1892.560 kb on - strand, within B158DRAFT_1797 at 1892.563 kb on + strand, within B158DRAFT_1797 at 1892.565 kb on + strand, within B158DRAFT_1797 at 1892.573 kb on + strand, within B158DRAFT_1797 at 1892.573 kb on + strand, within B158DRAFT_1797 at 1892.573 kb on + strand, within B158DRAFT_1797 at 1892.573 kb on + strand, within B158DRAFT_1797 at 1892.573 kb on + strand, within B158DRAFT_1797 at 1892.573 kb on + strand, within B158DRAFT_1797 at 1892.581 kb on - strand, within B158DRAFT_1797 at 1892.581 kb on - strand, within B158DRAFT_1797 at 1892.600 kb on + strand, within B158DRAFT_1797 at 1892.631 kb on - strand, within B158DRAFT_1797 at 1892.633 kb on + strand, within B158DRAFT_1797 at 1892.837 kb on - strand at 1892.837 kb on - strand at 1892.852 kb on - strand at 1892.982 kb on + strand at 1893.025 kb on + strand at 1893.035 kb on + strand at 1893.054 kb on + strand at 1893.062 kb on - strand at 1893.062 kb on - strand at 1893.062 kb on - strand at 1893.150 kb on - strand at 1893.195 kb on + strand at 1893.200 kb on + strand at 1893.203 kb on - strand at 1893.240 kb on + strand at 1893.314 kb on + strand, within B158DRAFT_1798 at 1893.322 kb on + strand, within B158DRAFT_1798 at 1893.371 kb on + strand, within B158DRAFT_1798 at 1893.371 kb on - strand, within B158DRAFT_1798 at 1893.379 kb on - strand, within B158DRAFT_1798 at 1893.627 kb on + strand, within B158DRAFT_1798 at 1893.627 kb on + strand, within B158DRAFT_1798 at 1893.737 kb on + strand, within B158DRAFT_1798 at 1893.853 kb on + strand, within B158DRAFT_1798 at 1893.923 kb on - strand, within B158DRAFT_1798 at 1894.134 kb on - strand, within B158DRAFT_1798 at 1894.187 kb on - strand, within B158DRAFT_1798 at 1894.189 kb on + strand, within B158DRAFT_1798 at 1894.197 kb on - strand, within B158DRAFT_1798 at 1894.242 kb on - strand, within B158DRAFT_1798 at 1894.283 kb on + strand, within B158DRAFT_1798 at 1894.284 kb on + strand, within B158DRAFT_1798 at 1894.297 kb on + strand, within B158DRAFT_1798 at 1894.323 kb on + strand, within B158DRAFT_1798 at 1894.443 kb on + strand, within B158DRAFT_1798 at 1894.445 kb on - strand, within B158DRAFT_1798 at 1894.544 kb on - strand, within B158DRAFT_1798 at 1894.640 kb on - strand, within B158DRAFT_1798 at 1894.641 kb on - strand, within B158DRAFT_1798 at 1894.647 kb on - strand, within B158DRAFT_1798 at 1894.721 kb on - strand, within B158DRAFT_1798 at 1894.948 kb on - strand at 1894.987 kb on + strand at 1894.995 kb on - strand at 1894.996 kb on + strand at 1895.004 kb on - strand at 1895.004 kb on - strand at 1895.004 kb on - strand at 1895.121 kb on + strand at 1895.263 kb on + strand at 1895.264 kb on - strand at 1895.284 kb on + strand at 1895.290 kb on + strand at 1895.290 kb on - strand at 1895.290 kb on - strand at 1895.290 kb on - strand at 1895.431 kb on + strand, within B158DRAFT_1799 at 1895.443 kb on + strand, within B158DRAFT_1799 at 1895.449 kb on + strand, within B158DRAFT_1799 at 1895.449 kb on - strand, within B158DRAFT_1799 at 1895.451 kb on - strand, within B158DRAFT_1799 at 1895.457 kb on - strand, within B158DRAFT_1799 at 1895.470 kb on + strand, within B158DRAFT_1799 at 1895.470 kb on + strand, within B158DRAFT_1799 at 1895.470 kb on + strand, within B158DRAFT_1799 at 1895.480 kb on + strand, within B158DRAFT_1799 at 1895.483 kb on - strand, within B158DRAFT_1799 at 1895.522 kb on + strand, within B158DRAFT_1799 at 1895.530 kb on - strand, within B158DRAFT_1799 at 1895.530 kb on - strand, within B158DRAFT_1799 at 1895.567 kb on + strand, within B158DRAFT_1799 at 1895.575 kb on - strand, within B158DRAFT_1799 at 1895.583 kb on - strand, within B158DRAFT_1799 at 1895.626 kb on + strand, within B158DRAFT_1799 at 1895.634 kb on - strand, within B158DRAFT_1799 at 1895.634 kb on - strand, within B158DRAFT_1799 at 1895.634 kb on - strand, within B158DRAFT_1799 at 1895.776 kb on + strand, within B158DRAFT_1799 at 1895.828 kb on - strand, within B158DRAFT_1799 at 1895.863 kb on + strand, within B158DRAFT_1799 at 1895.863 kb on + strand, within B158DRAFT_1799 at 1895.863 kb on + strand, within B158DRAFT_1799 at 1895.871 kb on - strand, within B158DRAFT_1799 at 1895.871 kb on - strand, within B158DRAFT_1799 at 1895.871 kb on - strand, within B158DRAFT_1799 at 1895.873 kb on + strand, within B158DRAFT_1799 at 1895.891 kb on - strand, within B158DRAFT_1799 at 1895.901 kb on + strand, within B158DRAFT_1799 at 1895.901 kb on + strand, within B158DRAFT_1799 at 1895.971 kb on + strand, within B158DRAFT_1799 at 1895.986 kb on - strand, within B158DRAFT_1799 at 1895.994 kb on + strand, within B158DRAFT_1799 at 1896.060 kb on - strand, within B158DRAFT_1799 at 1896.071 kb on - strand, within B158DRAFT_1799 at 1896.092 kb on - strand, within B158DRAFT_1799 at 1896.092 kb on - strand, within B158DRAFT_1799
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.1 mg/ml remove 1,892,116 - B158DRAFT_1797 0.52 +0.3 1,892,161 - B158DRAFT_1797 0.54 +1.7 1,892,220 + B158DRAFT_1797 0.57 +0.4 1,892,220 + B158DRAFT_1797 0.57 +0.5 1,892,228 - B158DRAFT_1797 0.58 +1.1 1,892,228 - B158DRAFT_1797 0.58 +0.3 1,892,240 - B158DRAFT_1797 0.58 +0.0 1,892,242 + B158DRAFT_1797 0.58 +0.3 1,892,250 - B158DRAFT_1797 0.59 +0.4 1,892,316 + B158DRAFT_1797 0.62 +0.0 1,892,318 + B158DRAFT_1797 0.62 -0.2 1,892,318 + B158DRAFT_1797 0.62 +0.5 1,892,318 + B158DRAFT_1797 0.62 +0.8 1,892,326 - B158DRAFT_1797 0.63 -0.3 1,892,326 - B158DRAFT_1797 0.63 +0.5 1,892,380 - B158DRAFT_1797 0.66 +0.9 1,892,487 + B158DRAFT_1797 0.71 +0.1 1,892,487 + B158DRAFT_1797 0.71 +1.3 1,892,487 + B158DRAFT_1797 0.71 -0.3 1,892,487 + B158DRAFT_1797 0.71 +0.2 1,892,487 + B158DRAFT_1797 0.71 -0.7 1,892,487 + B158DRAFT_1797 0.71 +0.3 1,892,487 + B158DRAFT_1797 0.71 -0.3 1,892,495 - B158DRAFT_1797 0.72 -1.3 1,892,495 - B158DRAFT_1797 0.72 -0.5 1,892,495 - B158DRAFT_1797 0.72 -4.4 1,892,495 - B158DRAFT_1797 0.72 +0.2 1,892,495 - B158DRAFT_1797 0.72 +0.4 1,892,495 - B158DRAFT_1797 0.72 -3.2 1,892,495 - B158DRAFT_1797 0.72 -0.3 1,892,558 - B158DRAFT_1797 0.75 -0.4 1,892,558 - B158DRAFT_1797 0.75 -0.8 1,892,560 - B158DRAFT_1797 0.75 -0.4 1,892,563 + B158DRAFT_1797 0.75 +0.2 1,892,565 + B158DRAFT_1797 0.76 +1.6 1,892,573 + B158DRAFT_1797 0.76 -2.8 1,892,573 + B158DRAFT_1797 0.76 -0.0 1,892,573 + B158DRAFT_1797 0.76 -1.4 1,892,573 + B158DRAFT_1797 0.76 +0.4 1,892,573 + B158DRAFT_1797 0.76 -0.2 1,892,573 + B158DRAFT_1797 0.76 +0.6 1,892,581 - B158DRAFT_1797 0.76 +0.1 1,892,581 - B158DRAFT_1797 0.76 +1.2 1,892,600 + B158DRAFT_1797 0.77 -0.2 1,892,631 - B158DRAFT_1797 0.79 -3.3 1,892,633 + B158DRAFT_1797 0.79 -0.4 1,892,837 - -1.8 1,892,837 - -3.5 1,892,852 - -0.1 1,892,982 + +0.4 1,893,025 + -0.7 1,893,035 + +0.8 1,893,054 + +0.4 1,893,062 - -0.5 1,893,062 - -0.3 1,893,062 - +0.0 1,893,150 - +1.4 1,893,195 + +0.2 1,893,200 + -1.1 1,893,203 - +0.6 1,893,240 + +0.3 1,893,314 + B158DRAFT_1798 0.11 -0.5 1,893,322 + B158DRAFT_1798 0.11 -0.5 1,893,371 + B158DRAFT_1798 0.13 -5.5 1,893,371 - B158DRAFT_1798 0.13 -0.2 1,893,379 - B158DRAFT_1798 0.14 -0.7 1,893,627 + B158DRAFT_1798 0.26 +0.1 1,893,627 + B158DRAFT_1798 0.26 +0.0 1,893,737 + B158DRAFT_1798 0.32 +0.0 1,893,853 + B158DRAFT_1798 0.37 +0.8 1,893,923 - B158DRAFT_1798 0.41 -0.3 1,894,134 - B158DRAFT_1798 0.51 -0.6 1,894,187 - B158DRAFT_1798 0.54 -0.2 1,894,189 + B158DRAFT_1798 0.54 +1.2 1,894,197 - B158DRAFT_1798 0.54 -1.2 1,894,242 - B158DRAFT_1798 0.57 +0.2 1,894,283 + B158DRAFT_1798 0.59 -0.4 1,894,284 + B158DRAFT_1798 0.59 -0.3 1,894,297 + B158DRAFT_1798 0.59 -0.1 1,894,323 + B158DRAFT_1798 0.61 +0.1 1,894,443 + B158DRAFT_1798 0.67 +0.5 1,894,445 - B158DRAFT_1798 0.67 +0.5 1,894,544 - B158DRAFT_1798 0.72 +0.9 1,894,640 - B158DRAFT_1798 0.76 -1.2 1,894,641 - B158DRAFT_1798 0.77 +0.6 1,894,647 - B158DRAFT_1798 0.77 -1.7 1,894,721 - B158DRAFT_1798 0.80 -4.0 1,894,948 - +0.3 1,894,987 + +0.0 1,894,995 - -0.7 1,894,996 + +0.8 1,895,004 - +0.6 1,895,004 - +0.7 1,895,004 - -0.4 1,895,121 + -1.2 1,895,263 + -0.4 1,895,264 - +0.5 1,895,284 + +1.2 1,895,290 + +0.0 1,895,290 - -1.5 1,895,290 - -0.4 1,895,290 - -0.6 1,895,431 + B158DRAFT_1799 0.14 -0.4 1,895,443 + B158DRAFT_1799 0.15 -1.2 1,895,449 + B158DRAFT_1799 0.16 -0.5 1,895,449 - B158DRAFT_1799 0.16 -1.5 1,895,451 - B158DRAFT_1799 0.16 +0.1 1,895,457 - B158DRAFT_1799 0.16 +0.4 1,895,470 + B158DRAFT_1799 0.17 -0.6 1,895,470 + B158DRAFT_1799 0.17 +0.3 1,895,470 + B158DRAFT_1799 0.17 -2.0 1,895,480 + B158DRAFT_1799 0.18 -0.0 1,895,483 - B158DRAFT_1799 0.18 +0.1 1,895,522 + B158DRAFT_1799 0.21 +0.4 1,895,530 - B158DRAFT_1799 0.22 -0.3 1,895,530 - B158DRAFT_1799 0.22 -1.2 1,895,567 + B158DRAFT_1799 0.25 -0.3 1,895,575 - B158DRAFT_1799 0.25 -0.4 1,895,583 - B158DRAFT_1799 0.26 -0.5 1,895,626 + B158DRAFT_1799 0.29 +0.3 1,895,634 - B158DRAFT_1799 0.30 -0.1 1,895,634 - B158DRAFT_1799 0.30 +0.3 1,895,634 - B158DRAFT_1799 0.30 -1.1 1,895,776 + B158DRAFT_1799 0.40 -0.2 1,895,828 - B158DRAFT_1799 0.44 -0.2 1,895,863 + B158DRAFT_1799 0.47 +0.8 1,895,863 + B158DRAFT_1799 0.47 -0.7 1,895,863 + B158DRAFT_1799 0.47 +0.3 1,895,871 - B158DRAFT_1799 0.48 -0.5 1,895,871 - B158DRAFT_1799 0.48 -0.3 1,895,871 - B158DRAFT_1799 0.48 +0.1 1,895,873 + B158DRAFT_1799 0.48 +0.1 1,895,891 - B158DRAFT_1799 0.49 +0.0 1,895,901 + B158DRAFT_1799 0.50 -0.1 1,895,901 + B158DRAFT_1799 0.50 -0.3 1,895,971 + B158DRAFT_1799 0.55 -0.3 1,895,986 - B158DRAFT_1799 0.56 +0.2 1,895,994 + B158DRAFT_1799 0.57 -3.0 1,896,060 - B158DRAFT_1799 0.62 -0.5 1,896,071 - B158DRAFT_1799 0.63 -4.7 1,896,092 - B158DRAFT_1799 0.64 -0.2 1,896,092 - B158DRAFT_1799 0.64 +0.5
Or see this region's nucleotide sequence