Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0871

Experiment: m.b. Gentamicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0869 and B158DRAFT_0870 overlap by 27 nucleotidesB158DRAFT_0870 and B158DRAFT_0871 are separated by 94 nucleotidesB158DRAFT_0871 and B158DRAFT_0872 are separated by 21 nucleotidesB158DRAFT_0872 and B158DRAFT_0873 are separated by 100 nucleotides B158DRAFT_0869: B158DRAFT_0869 - dethiobiotin synthase, at 886,705 to 887,400 _0869 B158DRAFT_0870: B158DRAFT_0870 - hypothetical protein, at 887,374 to 887,784 _0870 B158DRAFT_0871: B158DRAFT_0871 - Diacylglycerol kinase, at 887,879 to 888,250 _0871 B158DRAFT_0872: B158DRAFT_0872 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 888,272 to 888,895 _0872 B158DRAFT_0873: B158DRAFT_0873 - DNA adenine methylase Dam, at 888,996 to 889,829 _0873 Position (kb) 887 888 889Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 887.359 kb on + strandat 887.381 kb on + strandat 887.381 kb on + strandat 887.397 kb on - strandat 887.436 kb on + strand, within B158DRAFT_0870at 887.436 kb on + strand, within B158DRAFT_0870at 887.530 kb on + strand, within B158DRAFT_0870at 887.534 kb on - strand, within B158DRAFT_0870at 887.555 kb on - strand, within B158DRAFT_0870at 887.559 kb on + strand, within B158DRAFT_0870at 887.559 kb on + strand, within B158DRAFT_0870at 887.566 kb on + strand, within B158DRAFT_0870at 887.566 kb on + strand, within B158DRAFT_0870at 887.567 kb on - strand, within B158DRAFT_0870at 887.574 kb on - strand, within B158DRAFT_0870at 887.594 kb on - strand, within B158DRAFT_0870at 887.597 kb on + strand, within B158DRAFT_0870at 887.597 kb on + strand, within B158DRAFT_0870at 887.597 kb on + strand, within B158DRAFT_0870at 887.605 kb on - strand, within B158DRAFT_0870at 887.607 kb on + strand, within B158DRAFT_0870at 887.614 kb on + strand, within B158DRAFT_0870at 887.622 kb on - strand, within B158DRAFT_0870at 887.640 kb on - strand, within B158DRAFT_0870at 887.699 kb on + strand, within B158DRAFT_0870at 887.699 kb on + strand, within B158DRAFT_0870at 887.707 kb on - strand, within B158DRAFT_0870at 887.726 kb on - strand, within B158DRAFT_0870at 887.728 kb on + strand, within B158DRAFT_0870at 887.736 kb on - strand, within B158DRAFT_0870at 887.736 kb on - strand, within B158DRAFT_0870at 887.736 kb on - strand, within B158DRAFT_0870at 887.741 kb on - strand, within B158DRAFT_0870at 887.817 kb on + strandat 887.822 kb on + strandat 887.825 kb on - strandat 887.840 kb on + strandat 887.846 kb on - strandat 887.847 kb on - strandat 887.848 kb on - strandat 887.848 kb on - strandat 887.848 kb on - strandat 887.853 kb on - strandat 887.948 kb on - strand, within B158DRAFT_0871at 887.963 kb on - strand, within B158DRAFT_0871at 887.963 kb on - strand, within B158DRAFT_0871at 887.963 kb on - strand, within B158DRAFT_0871at 887.963 kb on - strand, within B158DRAFT_0871at 888.002 kb on - strand, within B158DRAFT_0871at 888.124 kb on + strand, within B158DRAFT_0871at 888.155 kb on - strand, within B158DRAFT_0871at 888.156 kb on - strand, within B158DRAFT_0871at 888.184 kb on - strand, within B158DRAFT_0871at 888.184 kb on - strand, within B158DRAFT_0871at 888.199 kb on + strand, within B158DRAFT_0871at 888.200 kb on - strand, within B158DRAFT_0871at 888.207 kb on - strand, within B158DRAFT_0871at 888.220 kb on - strandat 888.256 kb on - strandat 888.270 kb on + strandat 888.270 kb on + strandat 888.270 kb on + strandat 888.270 kb on + strandat 888.278 kb on - strandat 888.278 kb on - strandat 888.331 kb on - strandat 888.331 kb on - strandat 888.340 kb on + strand, within B158DRAFT_0872at 888.340 kb on + strand, within B158DRAFT_0872at 888.341 kb on - strand, within B158DRAFT_0872at 888.348 kb on - strand, within B158DRAFT_0872at 888.349 kb on + strand, within B158DRAFT_0872at 888.349 kb on + strand, within B158DRAFT_0872at 888.350 kb on + strand, within B158DRAFT_0872at 888.363 kb on + strand, within B158DRAFT_0872at 888.393 kb on + strand, within B158DRAFT_0872at 888.393 kb on + strand, within B158DRAFT_0872at 888.393 kb on + strand, within B158DRAFT_0872at 888.393 kb on + strand, within B158DRAFT_0872at 888.395 kb on - strand, within B158DRAFT_0872at 888.401 kb on - strand, within B158DRAFT_0872at 888.429 kb on + strand, within B158DRAFT_0872at 888.429 kb on + strand, within B158DRAFT_0872at 888.504 kb on + strand, within B158DRAFT_0872at 888.523 kb on + strand, within B158DRAFT_0872at 888.531 kb on + strand, within B158DRAFT_0872at 888.540 kb on + strand, within B158DRAFT_0872at 888.562 kb on - strand, within B158DRAFT_0872at 888.562 kb on - strand, within B158DRAFT_0872at 888.562 kb on - strand, within B158DRAFT_0872at 888.680 kb on - strand, within B158DRAFT_0872at 888.681 kb on + strand, within B158DRAFT_0872at 888.703 kb on - strand, within B158DRAFT_0872at 888.734 kb on - strand, within B158DRAFT_0872at 888.776 kb on - strand, within B158DRAFT_0872at 888.797 kb on - strand, within B158DRAFT_0872at 888.810 kb on + strand, within B158DRAFT_0872at 889.018 kb on - strandat 889.063 kb on - strandat 889.068 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.1 mg/ml
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887,359 + -1.0
887,381 + +0.7
887,381 + -0.6
887,397 - -0.1
887,436 + B158DRAFT_0870 0.15 +0.7
887,436 + B158DRAFT_0870 0.15 +0.1
887,530 + B158DRAFT_0870 0.38 -3.3
887,534 - B158DRAFT_0870 0.39 -0.4
887,555 - B158DRAFT_0870 0.44 -0.3
887,559 + B158DRAFT_0870 0.45 -0.6
887,559 + B158DRAFT_0870 0.45 +0.9
887,566 + B158DRAFT_0870 0.47 -0.7
887,566 + B158DRAFT_0870 0.47 -1.0
887,567 - B158DRAFT_0870 0.47 +0.7
887,574 - B158DRAFT_0870 0.49 -0.1
887,594 - B158DRAFT_0870 0.54 +0.4
887,597 + B158DRAFT_0870 0.54 -3.1
887,597 + B158DRAFT_0870 0.54 -0.8
887,597 + B158DRAFT_0870 0.54 -0.7
887,605 - B158DRAFT_0870 0.56 -1.2
887,607 + B158DRAFT_0870 0.57 -0.5
887,614 + B158DRAFT_0870 0.58 -0.3
887,622 - B158DRAFT_0870 0.60 +1.3
887,640 - B158DRAFT_0870 0.65 -0.2
887,699 + B158DRAFT_0870 0.79 -4.8
887,699 + B158DRAFT_0870 0.79 -0.3
887,707 - B158DRAFT_0870 0.81 -0.7
887,726 - B158DRAFT_0870 0.86 +0.8
887,728 + B158DRAFT_0870 0.86 +0.1
887,736 - B158DRAFT_0870 0.88 +0.4
887,736 - B158DRAFT_0870 0.88 -0.3
887,736 - B158DRAFT_0870 0.88 -0.4
887,741 - B158DRAFT_0870 0.89 -0.7
887,817 + -0.6
887,822 + +0.4
887,825 - +0.2
887,840 + -2.8
887,846 - +0.1
887,847 - -0.3
887,848 - -0.9
887,848 - -0.1
887,848 - -0.6
887,853 - +1.5
887,948 - B158DRAFT_0871 0.19 +0.2
887,963 - B158DRAFT_0871 0.23 +0.4
887,963 - B158DRAFT_0871 0.23 -0.7
887,963 - B158DRAFT_0871 0.23 +0.2
887,963 - B158DRAFT_0871 0.23 -0.6
888,002 - B158DRAFT_0871 0.33 +0.8
888,124 + B158DRAFT_0871 0.66 +0.5
888,155 - B158DRAFT_0871 0.74 -0.8
888,156 - B158DRAFT_0871 0.74 -0.5
888,184 - B158DRAFT_0871 0.82 +0.2
888,184 - B158DRAFT_0871 0.82 -0.1
888,199 + B158DRAFT_0871 0.86 -0.0
888,200 - B158DRAFT_0871 0.86 -0.4
888,207 - B158DRAFT_0871 0.88 +0.7
888,220 - +0.0
888,256 - +0.1
888,270 + -1.0
888,270 + -1.0
888,270 + -0.2
888,270 + -1.8
888,278 - +0.1
888,278 - -0.0
888,331 - +0.3
888,331 - -0.4
888,340 + B158DRAFT_0872 0.11 +1.6
888,340 + B158DRAFT_0872 0.11 -0.8
888,341 - B158DRAFT_0872 0.11 -0.1
888,348 - B158DRAFT_0872 0.12 +0.0
888,349 + B158DRAFT_0872 0.12 -3.8
888,349 + B158DRAFT_0872 0.12 +0.1
888,350 + B158DRAFT_0872 0.12 -0.4
888,363 + B158DRAFT_0872 0.15 +0.3
888,393 + B158DRAFT_0872 0.19 -0.4
888,393 + B158DRAFT_0872 0.19 -0.4
888,393 + B158DRAFT_0872 0.19 -0.7
888,393 + B158DRAFT_0872 0.19 +0.3
888,395 - B158DRAFT_0872 0.20 -1.4
888,401 - B158DRAFT_0872 0.21 +0.6
888,429 + B158DRAFT_0872 0.25 -0.0
888,429 + B158DRAFT_0872 0.25 -0.5
888,504 + B158DRAFT_0872 0.37 -0.5
888,523 + B158DRAFT_0872 0.40 -0.8
888,531 + B158DRAFT_0872 0.42 +0.6
888,540 + B158DRAFT_0872 0.43 -0.1
888,562 - B158DRAFT_0872 0.46 -1.2
888,562 - B158DRAFT_0872 0.46 -0.2
888,562 - B158DRAFT_0872 0.46 -1.3
888,680 - B158DRAFT_0872 0.65 +0.3
888,681 + B158DRAFT_0872 0.66 -3.9
888,703 - B158DRAFT_0872 0.69 +0.0
888,734 - B158DRAFT_0872 0.74 -0.4
888,776 - B158DRAFT_0872 0.81 -0.4
888,797 - B158DRAFT_0872 0.84 -0.8
888,810 + B158DRAFT_0872 0.86 +0.0
889,018 - +0.3
889,063 - -0.4
889,068 - -0.4

Or see this region's nucleotide sequence