Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0576

Experiment: m.b. Gentamicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0574 and B158DRAFT_0575 are separated by 28 nucleotidesB158DRAFT_0575 and B158DRAFT_0576 are separated by 146 nucleotidesB158DRAFT_0576 and B158DRAFT_0577 are separated by 262 nucleotidesB158DRAFT_0577 and B158DRAFT_0578 are separated by 103 nucleotides B158DRAFT_0574: B158DRAFT_0574 - (p)ppGpp synthetase, RelA/SpoT family, at 578,324 to 580,441 _0574 B158DRAFT_0575: B158DRAFT_0575 - DNA-directed RNA polymerase subunit omega (EC 2.7.7.6), at 580,470 to 580,718 _0575 B158DRAFT_0576: B158DRAFT_0576 - guanylate kinase (EC 2.7.4.8), at 580,865 to 581,518 _0576 B158DRAFT_0577: B158DRAFT_0577 - hypothetical protein, at 581,781 to 582,320 _0577 B158DRAFT_0578: B158DRAFT_0578 - translation factor SUA5, at 582,424 to 583,395 _0578 Position (kb) 580 581 582Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 580.727 kb on - strandat 580.768 kb on - strandat 580.833 kb on - strandat 581.553 kb on - strandat 581.569 kb on - strandat 581.576 kb on - strandat 581.655 kb on - strandat 581.706 kb on + strandat 581.711 kb on + strandat 581.714 kb on - strandat 581.714 kb on - strandat 581.714 kb on - strandat 581.719 kb on - strandat 581.804 kb on + strandat 581.804 kb on + strandat 581.804 kb on + strandat 581.812 kb on + strandat 581.812 kb on + strandat 581.812 kb on + strandat 581.820 kb on + strandat 581.826 kb on - strandat 581.901 kb on + strand, within B158DRAFT_0577at 581.931 kb on - strand, within B158DRAFT_0577at 581.949 kb on - strand, within B158DRAFT_0577at 581.949 kb on - strand, within B158DRAFT_0577at 581.951 kb on + strand, within B158DRAFT_0577at 581.951 kb on + strand, within B158DRAFT_0577at 581.958 kb on + strand, within B158DRAFT_0577at 581.958 kb on + strand, within B158DRAFT_0577at 581.959 kb on - strand, within B158DRAFT_0577at 581.959 kb on - strand, within B158DRAFT_0577at 581.966 kb on - strand, within B158DRAFT_0577at 581.966 kb on - strand, within B158DRAFT_0577at 581.987 kb on + strand, within B158DRAFT_0577at 581.992 kb on + strand, within B158DRAFT_0577at 582.000 kb on + strand, within B158DRAFT_0577at 582.097 kb on - strand, within B158DRAFT_0577at 582.180 kb on + strand, within B158DRAFT_0577at 582.180 kb on + strand, within B158DRAFT_0577at 582.180 kb on + strand, within B158DRAFT_0577at 582.180 kb on + strand, within B158DRAFT_0577at 582.180 kb on + strand, within B158DRAFT_0577at 582.180 kb on + strand, within B158DRAFT_0577at 582.180 kb on + strand, within B158DRAFT_0577at 582.180 kb on + strand, within B158DRAFT_0577at 582.180 kb on + strand, within B158DRAFT_0577at 582.180 kb on + strand, within B158DRAFT_0577at 582.180 kb on + strand, within B158DRAFT_0577at 582.180 kb on + strand, within B158DRAFT_0577at 582.180 kb on + strand, within B158DRAFT_0577at 582.185 kb on + strand, within B158DRAFT_0577at 582.188 kb on - strand, within B158DRAFT_0577at 582.188 kb on - strand, within B158DRAFT_0577at 582.188 kb on - strand, within B158DRAFT_0577at 582.188 kb on - strand, within B158DRAFT_0577at 582.188 kb on - strand, within B158DRAFT_0577at 582.188 kb on - strand, within B158DRAFT_0577at 582.188 kb on - strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.190 kb on + strand, within B158DRAFT_0577at 582.193 kb on - strand, within B158DRAFT_0577at 582.198 kb on + strand, within B158DRAFT_0577at 582.198 kb on - strand, within B158DRAFT_0577at 582.198 kb on - strand, within B158DRAFT_0577at 582.198 kb on - strand, within B158DRAFT_0577at 582.198 kb on - strand, within B158DRAFT_0577at 582.198 kb on - strand, within B158DRAFT_0577at 582.198 kb on - strand, within B158DRAFT_0577at 582.198 kb on - strand, within B158DRAFT_0577at 582.198 kb on - strand, within B158DRAFT_0577at 582.198 kb on - strand, within B158DRAFT_0577at 582.198 kb on - strand, within B158DRAFT_0577at 582.206 kb on - strand, within B158DRAFT_0577at 582.206 kb on - strand, within B158DRAFT_0577at 582.244 kb on + strand, within B158DRAFT_0577at 582.252 kb on - strand, within B158DRAFT_0577at 582.252 kb on - strand, within B158DRAFT_0577at 582.377 kb on - strandat 582.415 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.427 kb on + strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.435 kb on - strandat 582.442 kb on + strandat 582.450 kb on - strandat 582.450 kb on - strandat 582.450 kb on - strandat 582.511 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.1 mg/ml
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580,727 - +0.4
580,768 - -0.8
580,833 - -1.4
581,553 - -1.6
581,569 - +1.5
581,576 - +0.2
581,655 - -0.9
581,706 + +0.6
581,711 + -1.3
581,714 - -0.3
581,714 - -0.1
581,714 - +0.7
581,719 - -0.4
581,804 + -1.0
581,804 + +1.5
581,804 + +0.4
581,812 + +0.0
581,812 + +0.2
581,812 + +0.0
581,820 + +1.0
581,826 - -0.1
581,901 + B158DRAFT_0577 0.22 +0.3
581,931 - B158DRAFT_0577 0.28 +0.4
581,949 - B158DRAFT_0577 0.31 +0.2
581,949 - B158DRAFT_0577 0.31 -0.2
581,951 + B158DRAFT_0577 0.31 +0.4
581,951 + B158DRAFT_0577 0.31 -1.6
581,958 + B158DRAFT_0577 0.33 -0.1
581,958 + B158DRAFT_0577 0.33 -0.4
581,959 - B158DRAFT_0577 0.33 -0.9
581,959 - B158DRAFT_0577 0.33 +0.0
581,966 - B158DRAFT_0577 0.34 -0.4
581,966 - B158DRAFT_0577 0.34 -0.8
581,987 + B158DRAFT_0577 0.38 -0.2
581,992 + B158DRAFT_0577 0.39 -0.3
582,000 + B158DRAFT_0577 0.41 -4.3
582,097 - B158DRAFT_0577 0.59 -2.3
582,180 + B158DRAFT_0577 0.74 +0.8
582,180 + B158DRAFT_0577 0.74 +0.5
582,180 + B158DRAFT_0577 0.74 -1.0
582,180 + B158DRAFT_0577 0.74 +0.6
582,180 + B158DRAFT_0577 0.74 -0.0
582,180 + B158DRAFT_0577 0.74 -0.8
582,180 + B158DRAFT_0577 0.74 -0.1
582,180 + B158DRAFT_0577 0.74 -0.4
582,180 + B158DRAFT_0577 0.74 -3.7
582,180 + B158DRAFT_0577 0.74 -1.5
582,180 + B158DRAFT_0577 0.74 -0.4
582,180 + B158DRAFT_0577 0.74 +0.8
582,180 + B158DRAFT_0577 0.74 +0.3
582,185 + B158DRAFT_0577 0.75 +0.2
582,188 - B158DRAFT_0577 0.75 +0.0
582,188 - B158DRAFT_0577 0.75 -0.8
582,188 - B158DRAFT_0577 0.75 -0.1
582,188 - B158DRAFT_0577 0.75 +0.3
582,188 - B158DRAFT_0577 0.75 +0.3
582,188 - B158DRAFT_0577 0.75 -0.4
582,188 - B158DRAFT_0577 0.75 +0.7
582,190 + B158DRAFT_0577 0.76 -1.0
582,190 + B158DRAFT_0577 0.76 +0.1
582,190 + B158DRAFT_0577 0.76 -1.7
582,190 + B158DRAFT_0577 0.76 -1.8
582,190 + B158DRAFT_0577 0.76 +0.7
582,190 + B158DRAFT_0577 0.76 -1.6
582,190 + B158DRAFT_0577 0.76 +0.8
582,190 + B158DRAFT_0577 0.76 +0.3
582,190 + B158DRAFT_0577 0.76 -0.0
582,190 + B158DRAFT_0577 0.76 -0.4
582,190 + B158DRAFT_0577 0.76 -0.1
582,190 + B158DRAFT_0577 0.76 -0.6
582,190 + B158DRAFT_0577 0.76 -2.4
582,190 + B158DRAFT_0577 0.76 +0.2
582,190 + B158DRAFT_0577 0.76 -0.1
582,190 + B158DRAFT_0577 0.76 +0.3
582,190 + B158DRAFT_0577 0.76 -0.2
582,193 - B158DRAFT_0577 0.76 +0.6
582,198 + B158DRAFT_0577 0.77 -0.4
582,198 - B158DRAFT_0577 0.77 -0.3
582,198 - B158DRAFT_0577 0.77 -0.9
582,198 - B158DRAFT_0577 0.77 -0.4
582,198 - B158DRAFT_0577 0.77 -0.3
582,198 - B158DRAFT_0577 0.77 +0.3
582,198 - B158DRAFT_0577 0.77 +0.0
582,198 - B158DRAFT_0577 0.77 -0.1
582,198 - B158DRAFT_0577 0.77 +0.4
582,198 - B158DRAFT_0577 0.77 +0.5
582,198 - B158DRAFT_0577 0.77 +0.4
582,206 - B158DRAFT_0577 0.79 +0.9
582,206 - B158DRAFT_0577 0.79 -0.6
582,244 + B158DRAFT_0577 0.86 -0.1
582,252 - B158DRAFT_0577 0.87 -0.4
582,252 - B158DRAFT_0577 0.87 +0.4
582,377 - -0.0
582,415 + -1.6
582,427 + +0.3
582,427 + +0.3
582,427 + +0.5
582,427 + +0.1
582,427 + -0.1
582,427 + +0.0
582,427 + -1.6
582,427 + -2.4
582,427 + +0.4
582,427 + +0.3
582,427 + -0.4
582,427 + -0.1
582,427 + -0.1
582,427 + +0.3
582,427 + -0.3
582,427 + -0.4
582,427 + +0.4
582,427 + +0.5
582,427 + -0.5
582,435 - -0.3
582,435 - -1.3
582,435 - -0.0
582,435 - +0.9
582,435 - -0.7
582,435 - -2.9
582,435 - -0.5
582,435 - -1.7
582,435 - +0.5
582,435 - +0.2
582,435 - -0.4
582,435 - -0.3
582,435 - -0.1
582,435 - +0.9
582,435 - -0.2
582,435 - +0.1
582,442 + +0.8
582,450 - -2.9
582,450 - -0.3
582,450 - -1.1
582,511 + +0.4

Or see this region's nucleotide sequence