Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0544

Experiment: m.b. Gentamicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0543 and B158DRAFT_0544 are separated by 130 nucleotidesB158DRAFT_0544 and B158DRAFT_0545 are separated by 305 nucleotides B158DRAFT_0543: B158DRAFT_0543 - glycine cleavage system T protein, at 548,728 to 549,816 _0543 B158DRAFT_0544: B158DRAFT_0544 - glycine cleavage system H protein, at 549,947 to 550,336 _0544 B158DRAFT_0545: B158DRAFT_0545 - glycine dehydrogenase (decarboxylating), at 550,642 to 553,527 _0545 Position (kb) 549 550 551Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 549.088 kb on + strand, within B158DRAFT_0543at 549.780 kb on + strandat 549.810 kb on + strandat 549.810 kb on + strandat 549.834 kb on - strandat 550.227 kb on - strand, within B158DRAFT_0544at 550.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.1 mg/ml
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549,088 + B158DRAFT_0543 0.33 -3.9
549,780 + +0.3
549,810 + -0.8
549,810 + -0.9
549,834 - -0.3
550,227 - B158DRAFT_0544 0.72 +0.6
550,324 - -1.2

Or see this region's nucleotide sequence