Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0030

Experiment: m.b. Gentamicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0029 and B158DRAFT_0030 are separated by 309 nucleotidesB158DRAFT_0030 and B158DRAFT_0031 are separated by 11 nucleotidesB158DRAFT_0031 and B158DRAFT_0032 are separated by 3 nucleotides B158DRAFT_0029: B158DRAFT_0029 - Uncharacterized protein conserved in bacteria, at 29,019 to 29,504 _0029 B158DRAFT_0030: B158DRAFT_0030 - Putative translation initiation inhibitor, yjgF family, at 29,814 to 30,236 _0030 B158DRAFT_0031: B158DRAFT_0031 - 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6), at 30,248 to 30,790 _0031 B158DRAFT_0032: B158DRAFT_0032 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 30,794 to 31,810 _0032 Position (kb) 29 30 31Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 28.860 kb on - strandat 28.866 kb on - strandat 28.882 kb on + strandat 28.883 kb on + strandat 28.891 kb on - strandat 28.891 kb on - strandat 28.891 kb on - strandat 28.893 kb on + strandat 28.905 kb on + strandat 28.945 kb on + strandat 28.945 kb on + strandat 28.952 kb on + strandat 28.952 kb on + strandat 28.952 kb on + strandat 28.952 kb on + strandat 28.952 kb on + strandat 28.952 kb on + strandat 28.953 kb on - strandat 28.960 kb on - strandat 28.960 kb on - strandat 28.960 kb on - strandat 28.960 kb on - strandat 29.010 kb on + strandat 29.010 kb on + strandat 29.010 kb on + strandat 29.015 kb on + strandat 29.018 kb on - strandat 29.018 kb on - strandat 29.018 kb on - strandat 29.018 kb on - strandat 29.018 kb on - strandat 29.094 kb on + strand, within B158DRAFT_0029at 29.129 kb on - strand, within B158DRAFT_0029at 29.129 kb on - strand, within B158DRAFT_0029at 29.131 kb on + strand, within B158DRAFT_0029at 29.131 kb on + strand, within B158DRAFT_0029at 29.131 kb on + strand, within B158DRAFT_0029at 29.131 kb on + strand, within B158DRAFT_0029at 29.131 kb on + strand, within B158DRAFT_0029at 29.139 kb on - strand, within B158DRAFT_0029at 29.139 kb on - strand, within B158DRAFT_0029at 29.277 kb on + strand, within B158DRAFT_0029at 29.302 kb on + strand, within B158DRAFT_0029at 29.302 kb on + strand, within B158DRAFT_0029at 29.302 kb on + strand, within B158DRAFT_0029at 29.302 kb on + strand, within B158DRAFT_0029at 29.302 kb on + strand, within B158DRAFT_0029at 29.310 kb on - strand, within B158DRAFT_0029at 29.310 kb on - strand, within B158DRAFT_0029at 29.310 kb on - strand, within B158DRAFT_0029at 29.310 kb on - strand, within B158DRAFT_0029at 29.310 kb on - strand, within B158DRAFT_0029at 29.310 kb on - strand, within B158DRAFT_0029at 29.349 kb on - strand, within B158DRAFT_0029at 29.390 kb on + strand, within B158DRAFT_0029at 29.438 kb on + strand, within B158DRAFT_0029at 29.450 kb on + strand, within B158DRAFT_0029at 29.450 kb on + strand, within B158DRAFT_0029at 29.453 kb on - strand, within B158DRAFT_0029at 29.459 kb on + strandat 29.459 kb on + strandat 29.472 kb on - strandat 29.515 kb on - strandat 29.528 kb on - strandat 29.533 kb on + strandat 29.533 kb on + strandat 29.541 kb on - strandat 29.557 kb on - strandat 29.782 kb on + strandat 29.795 kb on + strandat 29.841 kb on + strandat 29.851 kb on - strandat 29.905 kb on + strand, within B158DRAFT_0030at 29.942 kb on - strand, within B158DRAFT_0030at 30.060 kb on - strand, within B158DRAFT_0030at 30.067 kb on + strand, within B158DRAFT_0030at 30.077 kb on - strand, within B158DRAFT_0030at 30.077 kb on - strand, within B158DRAFT_0030at 30.143 kb on + strand, within B158DRAFT_0030at 30.151 kb on - strand, within B158DRAFT_0030at 30.395 kb on - strand, within B158DRAFT_0031at 30.460 kb on + strand, within B158DRAFT_0031at 30.800 kb on + strandat 30.909 kb on - strand, within B158DRAFT_0032at 30.968 kb on + strand, within B158DRAFT_0032at 31.064 kb on - strand, within B158DRAFT_0032at 31.125 kb on - strand, within B158DRAFT_0032at 31.125 kb on - strand, within B158DRAFT_0032at 31.159 kb on - strand, within B158DRAFT_0032at 31.178 kb on + strand, within B158DRAFT_0032

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.1 mg/ml
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28,860 - -2.5
28,866 - -0.6
28,882 + +0.3
28,883 + -0.1
28,891 - -2.9
28,891 - +0.7
28,891 - -0.7
28,893 + +0.0
28,905 + -0.6
28,945 + +0.2
28,945 + -0.4
28,952 + +0.0
28,952 + -0.2
28,952 + +2.1
28,952 + +1.2
28,952 + -1.3
28,952 + -0.2
28,953 - -0.6
28,960 - -0.5
28,960 - -0.9
28,960 - -0.1
28,960 - -1.3
29,010 + -0.1
29,010 + +0.2
29,010 + +0.2
29,015 + -3.9
29,018 - -0.7
29,018 - +0.9
29,018 - +0.1
29,018 - +1.0
29,018 - +0.4
29,094 + B158DRAFT_0029 0.15 -1.2
29,129 - B158DRAFT_0029 0.23 -1.4
29,129 - B158DRAFT_0029 0.23 -0.6
29,131 + B158DRAFT_0029 0.23 +0.2
29,131 + B158DRAFT_0029 0.23 +1.0
29,131 + B158DRAFT_0029 0.23 -0.5
29,131 + B158DRAFT_0029 0.23 -1.0
29,131 + B158DRAFT_0029 0.23 -0.7
29,139 - B158DRAFT_0029 0.25 +0.8
29,139 - B158DRAFT_0029 0.25 -0.5
29,277 + B158DRAFT_0029 0.53 -0.3
29,302 + B158DRAFT_0029 0.58 -0.3
29,302 + B158DRAFT_0029 0.58 -0.0
29,302 + B158DRAFT_0029 0.58 -0.0
29,302 + B158DRAFT_0029 0.58 -0.5
29,302 + B158DRAFT_0029 0.58 -0.1
29,310 - B158DRAFT_0029 0.60 -1.0
29,310 - B158DRAFT_0029 0.60 -3.1
29,310 - B158DRAFT_0029 0.60 +0.1
29,310 - B158DRAFT_0029 0.60 +0.7
29,310 - B158DRAFT_0029 0.60 -3.7
29,310 - B158DRAFT_0029 0.60 +0.6
29,349 - B158DRAFT_0029 0.68 -0.2
29,390 + B158DRAFT_0029 0.76 -0.9
29,438 + B158DRAFT_0029 0.86 -0.4
29,450 + B158DRAFT_0029 0.89 -0.8
29,450 + B158DRAFT_0029 0.89 +0.5
29,453 - B158DRAFT_0029 0.89 -1.1
29,459 + +0.6
29,459 + -0.7
29,472 - +0.1
29,515 - -0.0
29,528 - +0.2
29,533 + -1.2
29,533 + +0.4
29,541 - +0.0
29,557 - -0.1
29,782 + -0.1
29,795 + -0.1
29,841 + -0.1
29,851 - -3.3
29,905 + B158DRAFT_0030 0.22 +0.5
29,942 - B158DRAFT_0030 0.30 -0.3
30,060 - B158DRAFT_0030 0.58 -0.8
30,067 + B158DRAFT_0030 0.60 -0.7
30,077 - B158DRAFT_0030 0.62 -0.6
30,077 - B158DRAFT_0030 0.62 -0.5
30,143 + B158DRAFT_0030 0.78 -0.5
30,151 - B158DRAFT_0030 0.80 -1.8
30,395 - B158DRAFT_0031 0.27 -0.7
30,460 + B158DRAFT_0031 0.39 -1.4
30,800 + +0.1
30,909 - B158DRAFT_0032 0.11 -1.8
30,968 + B158DRAFT_0032 0.17 +0.0
31,064 - B158DRAFT_0032 0.27 -0.4
31,125 - B158DRAFT_0032 0.33 -0.4
31,125 - B158DRAFT_0032 0.33 -0.3
31,159 - B158DRAFT_0032 0.36 -1.6
31,178 + B158DRAFT_0032 0.38 -1.4

Or see this region's nucleotide sequence