Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2374

Experiment: m.b. Gentamicin 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2372 and B158DRAFT_2373 are separated by 304 nucleotidesB158DRAFT_2373 and B158DRAFT_2374 overlap by 31 nucleotidesB158DRAFT_2374 and B158DRAFT_2375 are separated by 5 nucleotides B158DRAFT_2372: B158DRAFT_2372 - Transposase and inactivated derivatives, at 543,249 to 543,785 _2372 B158DRAFT_2373: B158DRAFT_2373 - Putative lipid carrier protein, at 544,090 to 544,662 _2373 B158DRAFT_2374: B158DRAFT_2374 - Collagenase and related proteases, at 544,632 to 545,513 _2374 B158DRAFT_2375: B158DRAFT_2375 - Collagenase and related proteases, at 545,519 to 546,508 _2375 Position (kb) 544 545 546Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 543.644 kb on + strand, within B158DRAFT_2372at 543.644 kb on + strand, within B158DRAFT_2372at 543.652 kb on - strand, within B158DRAFT_2372at 543.659 kb on - strand, within B158DRAFT_2372at 543.662 kb on - strand, within B158DRAFT_2372at 543.665 kb on + strand, within B158DRAFT_2372at 543.665 kb on + strand, within B158DRAFT_2372at 543.673 kb on - strand, within B158DRAFT_2372at 543.723 kb on + strand, within B158DRAFT_2372at 543.730 kb on + strand, within B158DRAFT_2372at 543.736 kb on - strandat 543.745 kb on - strandat 543.747 kb on + strandat 543.755 kb on - strandat 543.895 kb on - strandat 543.976 kb on - strandat 544.027 kb on - strandat 544.052 kb on + strandat 544.105 kb on - strandat 544.122 kb on - strandat 544.177 kb on - strand, within B158DRAFT_2373at 544.203 kb on - strand, within B158DRAFT_2373at 544.216 kb on - strand, within B158DRAFT_2373at 544.261 kb on - strand, within B158DRAFT_2373at 544.261 kb on - strand, within B158DRAFT_2373at 544.273 kb on + strand, within B158DRAFT_2373at 544.273 kb on + strand, within B158DRAFT_2373at 544.273 kb on + strand, within B158DRAFT_2373at 544.273 kb on + strand, within B158DRAFT_2373at 544.273 kb on + strand, within B158DRAFT_2373at 544.273 kb on + strand, within B158DRAFT_2373at 544.281 kb on - strand, within B158DRAFT_2373at 544.281 kb on - strand, within B158DRAFT_2373at 544.281 kb on - strand, within B158DRAFT_2373at 544.281 kb on - strand, within B158DRAFT_2373at 544.281 kb on - strand, within B158DRAFT_2373at 544.281 kb on - strand, within B158DRAFT_2373at 544.281 kb on - strand, within B158DRAFT_2373at 544.281 kb on - strand, within B158DRAFT_2373at 544.281 kb on - strand, within B158DRAFT_2373at 544.336 kb on + strand, within B158DRAFT_2373at 544.355 kb on + strand, within B158DRAFT_2373at 544.530 kb on - strand, within B158DRAFT_2373at 544.658 kb on + strandat 544.665 kb on + strandat 544.690 kb on - strandat 544.704 kb on + strandat 544.731 kb on + strand, within B158DRAFT_2374at 544.731 kb on + strand, within B158DRAFT_2374at 544.744 kb on - strand, within B158DRAFT_2374at 544.870 kb on + strand, within B158DRAFT_2374at 544.870 kb on + strand, within B158DRAFT_2374at 544.870 kb on + strand, within B158DRAFT_2374at 544.878 kb on - strand, within B158DRAFT_2374at 544.878 kb on - strand, within B158DRAFT_2374at 544.878 kb on - strand, within B158DRAFT_2374at 544.878 kb on - strand, within B158DRAFT_2374at 544.883 kb on - strand, within B158DRAFT_2374at 544.895 kb on - strand, within B158DRAFT_2374at 544.895 kb on - strand, within B158DRAFT_2374at 544.895 kb on - strand, within B158DRAFT_2374at 544.962 kb on - strand, within B158DRAFT_2374at 544.987 kb on - strand, within B158DRAFT_2374at 544.987 kb on - strand, within B158DRAFT_2374at 544.996 kb on + strand, within B158DRAFT_2374at 544.996 kb on + strand, within B158DRAFT_2374at 544.996 kb on + strand, within B158DRAFT_2374at 544.996 kb on + strand, within B158DRAFT_2374at 544.996 kb on + strand, within B158DRAFT_2374at 545.004 kb on - strand, within B158DRAFT_2374at 545.004 kb on - strand, within B158DRAFT_2374at 545.004 kb on - strand, within B158DRAFT_2374at 545.004 kb on - strand, within B158DRAFT_2374at 545.009 kb on - strand, within B158DRAFT_2374at 545.209 kb on + strand, within B158DRAFT_2374at 545.282 kb on + strand, within B158DRAFT_2374at 545.293 kb on + strand, within B158DRAFT_2374at 545.304 kb on + strand, within B158DRAFT_2374at 545.304 kb on + strand, within B158DRAFT_2374at 545.362 kb on + strand, within B158DRAFT_2374at 545.398 kb on - strand, within B158DRAFT_2374at 545.398 kb on - strand, within B158DRAFT_2374at 545.422 kb on - strand, within B158DRAFT_2374at 545.466 kb on + strandat 545.474 kb on - strandat 545.661 kb on + strand, within B158DRAFT_2375at 545.667 kb on + strand, within B158DRAFT_2375at 545.676 kb on + strand, within B158DRAFT_2375at 545.679 kb on - strand, within B158DRAFT_2375at 545.684 kb on - strand, within B158DRAFT_2375at 545.750 kb on + strand, within B158DRAFT_2375at 545.757 kb on - strand, within B158DRAFT_2375at 545.818 kb on + strand, within B158DRAFT_2375at 545.826 kb on - strand, within B158DRAFT_2375at 545.844 kb on + strand, within B158DRAFT_2375at 545.852 kb on - strand, within B158DRAFT_2375at 545.914 kb on + strand, within B158DRAFT_2375at 545.914 kb on + strand, within B158DRAFT_2375at 545.914 kb on + strand, within B158DRAFT_2375at 545.914 kb on + strand, within B158DRAFT_2375at 545.922 kb on - strand, within B158DRAFT_2375at 545.922 kb on - strand, within B158DRAFT_2375at 545.924 kb on - strand, within B158DRAFT_2375at 545.948 kb on + strand, within B158DRAFT_2375at 545.965 kb on + strand, within B158DRAFT_2375at 546.025 kb on + strand, within B158DRAFT_2375at 546.044 kb on + strand, within B158DRAFT_2375at 546.044 kb on + strand, within B158DRAFT_2375at 546.047 kb on - strand, within B158DRAFT_2375at 546.052 kb on - strand, within B158DRAFT_2375at 546.057 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.086 kb on + strand, within B158DRAFT_2375at 546.094 kb on - strand, within B158DRAFT_2375at 546.094 kb on - strand, within B158DRAFT_2375at 546.094 kb on - strand, within B158DRAFT_2375at 546.094 kb on - strand, within B158DRAFT_2375at 546.155 kb on + strand, within B158DRAFT_2375at 546.208 kb on - strand, within B158DRAFT_2375at 546.208 kb on - strand, within B158DRAFT_2375at 546.394 kb on - strand, within B158DRAFT_2375at 546.470 kb on - strandat 546.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.3 mg/ml
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543,644 + B158DRAFT_2372 0.74 -0.0
543,644 + B158DRAFT_2372 0.74 +0.5
543,652 - B158DRAFT_2372 0.75 +0.1
543,659 - B158DRAFT_2372 0.76 +0.9
543,662 - B158DRAFT_2372 0.77 -1.6
543,665 + B158DRAFT_2372 0.77 -2.6
543,665 + B158DRAFT_2372 0.77 -0.4
543,673 - B158DRAFT_2372 0.79 -0.8
543,723 + B158DRAFT_2372 0.88 -0.5
543,730 + B158DRAFT_2372 0.90 -1.2
543,736 - -0.5
543,745 - -0.2
543,747 + -0.8
543,755 - +0.4
543,895 - -0.6
543,976 - +0.1
544,027 - -0.3
544,052 + +0.0
544,105 - -1.1
544,122 - +0.4
544,177 - B158DRAFT_2373 0.15 +0.8
544,203 - B158DRAFT_2373 0.20 +0.1
544,216 - B158DRAFT_2373 0.22 +0.1
544,261 - B158DRAFT_2373 0.30 -0.3
544,261 - B158DRAFT_2373 0.30 +0.3
544,273 + B158DRAFT_2373 0.32 +2.0
544,273 + B158DRAFT_2373 0.32 +0.1
544,273 + B158DRAFT_2373 0.32 -0.5
544,273 + B158DRAFT_2373 0.32 +0.0
544,273 + B158DRAFT_2373 0.32 -1.0
544,273 + B158DRAFT_2373 0.32 -0.3
544,281 - B158DRAFT_2373 0.33 +0.5
544,281 - B158DRAFT_2373 0.33 -0.7
544,281 - B158DRAFT_2373 0.33 +0.0
544,281 - B158DRAFT_2373 0.33 -0.1
544,281 - B158DRAFT_2373 0.33 -0.7
544,281 - B158DRAFT_2373 0.33 -0.7
544,281 - B158DRAFT_2373 0.33 -0.6
544,281 - B158DRAFT_2373 0.33 +0.4
544,281 - B158DRAFT_2373 0.33 +0.3
544,336 + B158DRAFT_2373 0.43 +0.7
544,355 + B158DRAFT_2373 0.46 +0.3
544,530 - B158DRAFT_2373 0.77 -0.1
544,658 + +0.2
544,665 + +0.2
544,690 - -0.2
544,704 + -0.6
544,731 + B158DRAFT_2374 0.11 -1.1
544,731 + B158DRAFT_2374 0.11 +0.6
544,744 - B158DRAFT_2374 0.13 -1.0
544,870 + B158DRAFT_2374 0.27 -0.4
544,870 + B158DRAFT_2374 0.27 -1.5
544,870 + B158DRAFT_2374 0.27 -0.0
544,878 - B158DRAFT_2374 0.28 -0.8
544,878 - B158DRAFT_2374 0.28 -0.2
544,878 - B158DRAFT_2374 0.28 +0.6
544,878 - B158DRAFT_2374 0.28 +0.2
544,883 - B158DRAFT_2374 0.28 -0.4
544,895 - B158DRAFT_2374 0.30 -4.5
544,895 - B158DRAFT_2374 0.30 -1.7
544,895 - B158DRAFT_2374 0.30 +0.3
544,962 - B158DRAFT_2374 0.37 +0.3
544,987 - B158DRAFT_2374 0.40 +0.4
544,987 - B158DRAFT_2374 0.40 -2.0
544,996 + B158DRAFT_2374 0.41 -1.0
544,996 + B158DRAFT_2374 0.41 -0.6
544,996 + B158DRAFT_2374 0.41 -0.5
544,996 + B158DRAFT_2374 0.41 +0.6
544,996 + B158DRAFT_2374 0.41 -0.0
545,004 - B158DRAFT_2374 0.42 +0.8
545,004 - B158DRAFT_2374 0.42 +0.1
545,004 - B158DRAFT_2374 0.42 -0.2
545,004 - B158DRAFT_2374 0.42 +2.0
545,009 - B158DRAFT_2374 0.43 -0.4
545,209 + B158DRAFT_2374 0.65 -0.8
545,282 + B158DRAFT_2374 0.74 -0.0
545,293 + B158DRAFT_2374 0.75 -0.2
545,304 + B158DRAFT_2374 0.76 -0.1
545,304 + B158DRAFT_2374 0.76 -0.7
545,362 + B158DRAFT_2374 0.83 +0.3
545,398 - B158DRAFT_2374 0.87 +0.2
545,398 - B158DRAFT_2374 0.87 -0.4
545,422 - B158DRAFT_2374 0.90 -0.7
545,466 + +0.6
545,474 - +0.5
545,661 + B158DRAFT_2375 0.14 -1.2
545,667 + B158DRAFT_2375 0.15 +0.3
545,676 + B158DRAFT_2375 0.16 -1.0
545,679 - B158DRAFT_2375 0.16 -0.4
545,684 - B158DRAFT_2375 0.17 +0.1
545,750 + B158DRAFT_2375 0.23 +0.4
545,757 - B158DRAFT_2375 0.24 -2.8
545,818 + B158DRAFT_2375 0.30 -1.3
545,826 - B158DRAFT_2375 0.31 -0.7
545,844 + B158DRAFT_2375 0.33 -1.3
545,852 - B158DRAFT_2375 0.34 +0.1
545,914 + B158DRAFT_2375 0.40 -0.6
545,914 + B158DRAFT_2375 0.40 +0.2
545,914 + B158DRAFT_2375 0.40 -0.1
545,914 + B158DRAFT_2375 0.40 -0.2
545,922 - B158DRAFT_2375 0.41 +0.3
545,922 - B158DRAFT_2375 0.41 +0.0
545,924 - B158DRAFT_2375 0.41 -0.1
545,948 + B158DRAFT_2375 0.43 +0.3
545,965 + B158DRAFT_2375 0.45 -0.3
546,025 + B158DRAFT_2375 0.51 -4.5
546,044 + B158DRAFT_2375 0.53 +0.7
546,044 + B158DRAFT_2375 0.53 -0.5
546,047 - B158DRAFT_2375 0.53 -0.5
546,052 - B158DRAFT_2375 0.54 +1.1
546,057 + B158DRAFT_2375 0.54 +0.9
546,086 + B158DRAFT_2375 0.57 +0.3
546,086 + B158DRAFT_2375 0.57 -0.7
546,086 + B158DRAFT_2375 0.57 -0.1
546,086 + B158DRAFT_2375 0.57 +0.0
546,086 + B158DRAFT_2375 0.57 -2.0
546,086 + B158DRAFT_2375 0.57 +0.3
546,086 + B158DRAFT_2375 0.57 -1.7
546,094 - B158DRAFT_2375 0.58 -0.5
546,094 - B158DRAFT_2375 0.58 -0.3
546,094 - B158DRAFT_2375 0.58 +0.4
546,094 - B158DRAFT_2375 0.58 -0.8
546,155 + B158DRAFT_2375 0.64 -0.3
546,208 - B158DRAFT_2375 0.70 +0.7
546,208 - B158DRAFT_2375 0.70 +0.7
546,394 - B158DRAFT_2375 0.88 -0.1
546,470 - -1.1
546,485 - -0.1

Or see this region's nucleotide sequence