Experiment: m.b. Gentamicin 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1183 and B158DRAFT_1184 are separated by 48 nucleotides B158DRAFT_1184 and B158DRAFT_1185 are separated by 7 nucleotides B158DRAFT_1185 and B158DRAFT_1186 are separated by 56 nucleotides B158DRAFT_1186 and B158DRAFT_1187 are separated by 316 nucleotides B158DRAFT_1187 and B158DRAFT_1188 are separated by 34 nucleotides
B158DRAFT_1183: B158DRAFT_1183 - hypothetical protein, at 1,223,196 to 1,223,933
_1183
B158DRAFT_1184: B158DRAFT_1184 - hypothetical protein, at 1,223,982 to 1,224,341
_1184
B158DRAFT_1185: B158DRAFT_1185 - hypothetical protein, at 1,224,349 to 1,224,759
_1185
B158DRAFT_1186: B158DRAFT_1186 - hypothetical protein, at 1,224,816 to 1,225,361
_1186
B158DRAFT_1187: B158DRAFT_1187 - DNA-directed RNA polymerase specialized sigma subunit, at 1,225,678 to 1,226,307
_1187
B158DRAFT_1188: B158DRAFT_1188 - Protein of unknown function (DUF3307)., at 1,226,342 to 1,227,082
_1188
Position (kb)
1224
1225
1226 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1223.817 kb on + strand, within B158DRAFT_1183 at 1223.825 kb on + strand, within B158DRAFT_1183 at 1223.836 kb on + strand, within B158DRAFT_1183 at 1223.846 kb on + strand, within B158DRAFT_1183 at 1223.858 kb on + strand, within B158DRAFT_1183 at 1223.858 kb on + strand, within B158DRAFT_1183 at 1223.858 kb on + strand, within B158DRAFT_1183 at 1223.858 kb on + strand, within B158DRAFT_1183 at 1223.866 kb on - strand at 1223.866 kb on - strand at 1223.923 kb on - strand at 1223.923 kb on - strand at 1224.058 kb on - strand, within B158DRAFT_1184 at 1224.058 kb on - strand, within B158DRAFT_1184 at 1224.188 kb on - strand, within B158DRAFT_1184 at 1224.188 kb on - strand, within B158DRAFT_1184 at 1224.195 kb on + strand, within B158DRAFT_1184 at 1224.257 kb on + strand, within B158DRAFT_1184 at 1224.257 kb on + strand, within B158DRAFT_1184 at 1224.263 kb on - strand, within B158DRAFT_1184 at 1224.265 kb on - strand, within B158DRAFT_1184 at 1224.422 kb on - strand, within B158DRAFT_1185 at 1224.484 kb on - strand, within B158DRAFT_1185 at 1224.503 kb on - strand, within B158DRAFT_1185 at 1224.571 kb on - strand, within B158DRAFT_1185 at 1224.643 kb on - strand, within B158DRAFT_1185 at 1224.683 kb on + strand, within B158DRAFT_1185 at 1224.959 kb on + strand, within B158DRAFT_1186 at 1224.976 kb on - strand, within B158DRAFT_1186 at 1225.010 kb on - strand, within B158DRAFT_1186 at 1225.046 kb on + strand, within B158DRAFT_1186 at 1225.059 kb on - strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.066 kb on + strand, within B158DRAFT_1186 at 1225.068 kb on + strand, within B158DRAFT_1186 at 1225.074 kb on - strand, within B158DRAFT_1186 at 1225.074 kb on - strand, within B158DRAFT_1186 at 1225.074 kb on - strand, within B158DRAFT_1186 at 1225.074 kb on - strand, within B158DRAFT_1186 at 1225.074 kb on - strand, within B158DRAFT_1186 at 1225.074 kb on - strand, within B158DRAFT_1186 at 1225.076 kb on + strand, within B158DRAFT_1186 at 1225.076 kb on - strand, within B158DRAFT_1186 at 1225.076 kb on - strand, within B158DRAFT_1186 at 1225.088 kb on - strand, within B158DRAFT_1186 at 1225.467 kb on + strand at 1225.475 kb on - strand at 1225.475 kb on - strand at 1225.475 kb on - strand at 1225.485 kb on + strand at 1225.493 kb on - strand at 1225.585 kb on + strand at 1225.590 kb on + strand at 1225.592 kb on + strand at 1225.592 kb on + strand at 1225.592 kb on + strand at 1225.592 kb on + strand at 1225.593 kb on - strand at 1225.598 kb on - strand at 1225.598 kb on - strand at 1225.598 kb on - strand at 1225.600 kb on - strand at 1225.760 kb on + strand, within B158DRAFT_1187 at 1225.760 kb on + strand, within B158DRAFT_1187 at 1225.768 kb on - strand, within B158DRAFT_1187 at 1225.769 kb on - strand, within B158DRAFT_1187 at 1225.794 kb on + strand, within B158DRAFT_1187 at 1225.794 kb on + strand, within B158DRAFT_1187 at 1225.835 kb on + strand, within B158DRAFT_1187 at 1225.851 kb on + strand, within B158DRAFT_1187 at 1225.895 kb on - strand, within B158DRAFT_1187 at 1226.204 kb on + strand, within B158DRAFT_1187 at 1226.346 kb on - strand at 1226.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.3 mg/ml remove 1,223,817 + B158DRAFT_1183 0.84 +1.0 1,223,825 + B158DRAFT_1183 0.85 +0.1 1,223,836 + B158DRAFT_1183 0.87 -1.0 1,223,846 + B158DRAFT_1183 0.88 -0.1 1,223,858 + B158DRAFT_1183 0.90 +1.2 1,223,858 + B158DRAFT_1183 0.90 -0.1 1,223,858 + B158DRAFT_1183 0.90 -0.3 1,223,858 + B158DRAFT_1183 0.90 -0.2 1,223,866 - -0.9 1,223,866 - -0.2 1,223,923 - -0.2 1,223,923 - +0.1 1,224,058 - B158DRAFT_1184 0.21 +0.5 1,224,058 - B158DRAFT_1184 0.21 -0.5 1,224,188 - B158DRAFT_1184 0.57 +0.2 1,224,188 - B158DRAFT_1184 0.57 +0.3 1,224,195 + B158DRAFT_1184 0.59 -0.2 1,224,257 + B158DRAFT_1184 0.76 -0.0 1,224,257 + B158DRAFT_1184 0.76 +0.7 1,224,263 - B158DRAFT_1184 0.78 +0.0 1,224,265 - B158DRAFT_1184 0.79 +0.9 1,224,422 - B158DRAFT_1185 0.18 -0.6 1,224,484 - B158DRAFT_1185 0.33 +0.1 1,224,503 - B158DRAFT_1185 0.37 -0.2 1,224,571 - B158DRAFT_1185 0.54 +2.2 1,224,643 - B158DRAFT_1185 0.72 -0.9 1,224,683 + B158DRAFT_1185 0.81 -0.0 1,224,959 + B158DRAFT_1186 0.26 -1.4 1,224,976 - B158DRAFT_1186 0.29 -1.4 1,225,010 - B158DRAFT_1186 0.36 +0.1 1,225,046 + B158DRAFT_1186 0.42 -0.1 1,225,059 - B158DRAFT_1186 0.45 -0.1 1,225,066 + B158DRAFT_1186 0.46 +0.1 1,225,066 + B158DRAFT_1186 0.46 -2.2 1,225,066 + B158DRAFT_1186 0.46 -1.0 1,225,066 + B158DRAFT_1186 0.46 -0.6 1,225,066 + B158DRAFT_1186 0.46 -5.2 1,225,066 + B158DRAFT_1186 0.46 -0.2 1,225,066 + B158DRAFT_1186 0.46 +0.6 1,225,066 + B158DRAFT_1186 0.46 -0.5 1,225,066 + B158DRAFT_1186 0.46 -4.1 1,225,066 + B158DRAFT_1186 0.46 +0.2 1,225,066 + B158DRAFT_1186 0.46 -2.3 1,225,066 + B158DRAFT_1186 0.46 -0.7 1,225,066 + B158DRAFT_1186 0.46 -0.3 1,225,066 + B158DRAFT_1186 0.46 -2.5 1,225,066 + B158DRAFT_1186 0.46 -0.8 1,225,066 + B158DRAFT_1186 0.46 +0.1 1,225,066 + B158DRAFT_1186 0.46 +0.2 1,225,068 + B158DRAFT_1186 0.46 -0.3 1,225,074 - B158DRAFT_1186 0.47 +0.3 1,225,074 - B158DRAFT_1186 0.47 -0.8 1,225,074 - B158DRAFT_1186 0.47 -0.3 1,225,074 - B158DRAFT_1186 0.47 -0.6 1,225,074 - B158DRAFT_1186 0.47 +0.4 1,225,074 - B158DRAFT_1186 0.47 +0.0 1,225,076 + B158DRAFT_1186 0.48 +0.7 1,225,076 - B158DRAFT_1186 0.48 +0.6 1,225,076 - B158DRAFT_1186 0.48 +0.6 1,225,088 - B158DRAFT_1186 0.50 +0.1 1,225,467 + +0.2 1,225,475 - +0.2 1,225,475 - -0.1 1,225,475 - -0.3 1,225,485 + -1.5 1,225,493 - -0.0 1,225,585 + -0.0 1,225,590 + +0.4 1,225,592 + +0.1 1,225,592 + -0.7 1,225,592 + -0.9 1,225,592 + -0.2 1,225,593 - -1.6 1,225,598 - -0.2 1,225,598 - -0.1 1,225,598 - -0.8 1,225,600 - +0.6 1,225,760 + B158DRAFT_1187 0.13 +1.3 1,225,760 + B158DRAFT_1187 0.13 -0.8 1,225,768 - B158DRAFT_1187 0.14 -3.1 1,225,769 - B158DRAFT_1187 0.14 +0.7 1,225,794 + B158DRAFT_1187 0.18 +0.8 1,225,794 + B158DRAFT_1187 0.18 +1.1 1,225,835 + B158DRAFT_1187 0.25 -0.9 1,225,851 + B158DRAFT_1187 0.27 -1.9 1,225,895 - B158DRAFT_1187 0.34 +0.5 1,226,204 + B158DRAFT_1187 0.83 -3.3 1,226,346 - +0.3 1,226,346 - -1.0
Or see this region's nucleotide sequence