Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1186

Experiment: m.b. Gentamicin 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1183 and B158DRAFT_1184 are separated by 48 nucleotidesB158DRAFT_1184 and B158DRAFT_1185 are separated by 7 nucleotidesB158DRAFT_1185 and B158DRAFT_1186 are separated by 56 nucleotidesB158DRAFT_1186 and B158DRAFT_1187 are separated by 316 nucleotidesB158DRAFT_1187 and B158DRAFT_1188 are separated by 34 nucleotides B158DRAFT_1183: B158DRAFT_1183 - hypothetical protein, at 1,223,196 to 1,223,933 _1183 B158DRAFT_1184: B158DRAFT_1184 - hypothetical protein, at 1,223,982 to 1,224,341 _1184 B158DRAFT_1185: B158DRAFT_1185 - hypothetical protein, at 1,224,349 to 1,224,759 _1185 B158DRAFT_1186: B158DRAFT_1186 - hypothetical protein, at 1,224,816 to 1,225,361 _1186 B158DRAFT_1187: B158DRAFT_1187 - DNA-directed RNA polymerase specialized sigma subunit, at 1,225,678 to 1,226,307 _1187 B158DRAFT_1188: B158DRAFT_1188 - Protein of unknown function (DUF3307)., at 1,226,342 to 1,227,082 _1188 Position (kb) 1224 1225 1226Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1223.817 kb on + strand, within B158DRAFT_1183at 1223.825 kb on + strand, within B158DRAFT_1183at 1223.836 kb on + strand, within B158DRAFT_1183at 1223.846 kb on + strand, within B158DRAFT_1183at 1223.858 kb on + strand, within B158DRAFT_1183at 1223.858 kb on + strand, within B158DRAFT_1183at 1223.858 kb on + strand, within B158DRAFT_1183at 1223.858 kb on + strand, within B158DRAFT_1183at 1223.866 kb on - strandat 1223.866 kb on - strandat 1223.923 kb on - strandat 1223.923 kb on - strandat 1224.058 kb on - strand, within B158DRAFT_1184at 1224.058 kb on - strand, within B158DRAFT_1184at 1224.188 kb on - strand, within B158DRAFT_1184at 1224.188 kb on - strand, within B158DRAFT_1184at 1224.195 kb on + strand, within B158DRAFT_1184at 1224.257 kb on + strand, within B158DRAFT_1184at 1224.257 kb on + strand, within B158DRAFT_1184at 1224.263 kb on - strand, within B158DRAFT_1184at 1224.265 kb on - strand, within B158DRAFT_1184at 1224.422 kb on - strand, within B158DRAFT_1185at 1224.484 kb on - strand, within B158DRAFT_1185at 1224.503 kb on - strand, within B158DRAFT_1185at 1224.571 kb on - strand, within B158DRAFT_1185at 1224.643 kb on - strand, within B158DRAFT_1185at 1224.683 kb on + strand, within B158DRAFT_1185at 1224.959 kb on + strand, within B158DRAFT_1186at 1224.976 kb on - strand, within B158DRAFT_1186at 1225.010 kb on - strand, within B158DRAFT_1186at 1225.046 kb on + strand, within B158DRAFT_1186at 1225.059 kb on - strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.066 kb on + strand, within B158DRAFT_1186at 1225.068 kb on + strand, within B158DRAFT_1186at 1225.074 kb on - strand, within B158DRAFT_1186at 1225.074 kb on - strand, within B158DRAFT_1186at 1225.074 kb on - strand, within B158DRAFT_1186at 1225.074 kb on - strand, within B158DRAFT_1186at 1225.074 kb on - strand, within B158DRAFT_1186at 1225.074 kb on - strand, within B158DRAFT_1186at 1225.076 kb on + strand, within B158DRAFT_1186at 1225.076 kb on - strand, within B158DRAFT_1186at 1225.076 kb on - strand, within B158DRAFT_1186at 1225.088 kb on - strand, within B158DRAFT_1186at 1225.467 kb on + strandat 1225.475 kb on - strandat 1225.475 kb on - strandat 1225.475 kb on - strandat 1225.485 kb on + strandat 1225.493 kb on - strandat 1225.585 kb on + strandat 1225.590 kb on + strandat 1225.592 kb on + strandat 1225.592 kb on + strandat 1225.592 kb on + strandat 1225.592 kb on + strandat 1225.593 kb on - strandat 1225.598 kb on - strandat 1225.598 kb on - strandat 1225.598 kb on - strandat 1225.600 kb on - strandat 1225.760 kb on + strand, within B158DRAFT_1187at 1225.760 kb on + strand, within B158DRAFT_1187at 1225.768 kb on - strand, within B158DRAFT_1187at 1225.769 kb on - strand, within B158DRAFT_1187at 1225.794 kb on + strand, within B158DRAFT_1187at 1225.794 kb on + strand, within B158DRAFT_1187at 1225.835 kb on + strand, within B158DRAFT_1187at 1225.851 kb on + strand, within B158DRAFT_1187at 1225.895 kb on - strand, within B158DRAFT_1187at 1226.204 kb on + strand, within B158DRAFT_1187at 1226.346 kb on - strandat 1226.346 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.3 mg/ml
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1,223,817 + B158DRAFT_1183 0.84 +1.0
1,223,825 + B158DRAFT_1183 0.85 +0.1
1,223,836 + B158DRAFT_1183 0.87 -1.0
1,223,846 + B158DRAFT_1183 0.88 -0.1
1,223,858 + B158DRAFT_1183 0.90 +1.2
1,223,858 + B158DRAFT_1183 0.90 -0.1
1,223,858 + B158DRAFT_1183 0.90 -0.3
1,223,858 + B158DRAFT_1183 0.90 -0.2
1,223,866 - -0.9
1,223,866 - -0.2
1,223,923 - -0.2
1,223,923 - +0.1
1,224,058 - B158DRAFT_1184 0.21 +0.5
1,224,058 - B158DRAFT_1184 0.21 -0.5
1,224,188 - B158DRAFT_1184 0.57 +0.2
1,224,188 - B158DRAFT_1184 0.57 +0.3
1,224,195 + B158DRAFT_1184 0.59 -0.2
1,224,257 + B158DRAFT_1184 0.76 -0.0
1,224,257 + B158DRAFT_1184 0.76 +0.7
1,224,263 - B158DRAFT_1184 0.78 +0.0
1,224,265 - B158DRAFT_1184 0.79 +0.9
1,224,422 - B158DRAFT_1185 0.18 -0.6
1,224,484 - B158DRAFT_1185 0.33 +0.1
1,224,503 - B158DRAFT_1185 0.37 -0.2
1,224,571 - B158DRAFT_1185 0.54 +2.2
1,224,643 - B158DRAFT_1185 0.72 -0.9
1,224,683 + B158DRAFT_1185 0.81 -0.0
1,224,959 + B158DRAFT_1186 0.26 -1.4
1,224,976 - B158DRAFT_1186 0.29 -1.4
1,225,010 - B158DRAFT_1186 0.36 +0.1
1,225,046 + B158DRAFT_1186 0.42 -0.1
1,225,059 - B158DRAFT_1186 0.45 -0.1
1,225,066 + B158DRAFT_1186 0.46 +0.1
1,225,066 + B158DRAFT_1186 0.46 -2.2
1,225,066 + B158DRAFT_1186 0.46 -1.0
1,225,066 + B158DRAFT_1186 0.46 -0.6
1,225,066 + B158DRAFT_1186 0.46 -5.2
1,225,066 + B158DRAFT_1186 0.46 -0.2
1,225,066 + B158DRAFT_1186 0.46 +0.6
1,225,066 + B158DRAFT_1186 0.46 -0.5
1,225,066 + B158DRAFT_1186 0.46 -4.1
1,225,066 + B158DRAFT_1186 0.46 +0.2
1,225,066 + B158DRAFT_1186 0.46 -2.3
1,225,066 + B158DRAFT_1186 0.46 -0.7
1,225,066 + B158DRAFT_1186 0.46 -0.3
1,225,066 + B158DRAFT_1186 0.46 -2.5
1,225,066 + B158DRAFT_1186 0.46 -0.8
1,225,066 + B158DRAFT_1186 0.46 +0.1
1,225,066 + B158DRAFT_1186 0.46 +0.2
1,225,068 + B158DRAFT_1186 0.46 -0.3
1,225,074 - B158DRAFT_1186 0.47 +0.3
1,225,074 - B158DRAFT_1186 0.47 -0.8
1,225,074 - B158DRAFT_1186 0.47 -0.3
1,225,074 - B158DRAFT_1186 0.47 -0.6
1,225,074 - B158DRAFT_1186 0.47 +0.4
1,225,074 - B158DRAFT_1186 0.47 +0.0
1,225,076 + B158DRAFT_1186 0.48 +0.7
1,225,076 - B158DRAFT_1186 0.48 +0.6
1,225,076 - B158DRAFT_1186 0.48 +0.6
1,225,088 - B158DRAFT_1186 0.50 +0.1
1,225,467 + +0.2
1,225,475 - +0.2
1,225,475 - -0.1
1,225,475 - -0.3
1,225,485 + -1.5
1,225,493 - -0.0
1,225,585 + -0.0
1,225,590 + +0.4
1,225,592 + +0.1
1,225,592 + -0.7
1,225,592 + -0.9
1,225,592 + -0.2
1,225,593 - -1.6
1,225,598 - -0.2
1,225,598 - -0.1
1,225,598 - -0.8
1,225,600 - +0.6
1,225,760 + B158DRAFT_1187 0.13 +1.3
1,225,760 + B158DRAFT_1187 0.13 -0.8
1,225,768 - B158DRAFT_1187 0.14 -3.1
1,225,769 - B158DRAFT_1187 0.14 +0.7
1,225,794 + B158DRAFT_1187 0.18 +0.8
1,225,794 + B158DRAFT_1187 0.18 +1.1
1,225,835 + B158DRAFT_1187 0.25 -0.9
1,225,851 + B158DRAFT_1187 0.27 -1.9
1,225,895 - B158DRAFT_1187 0.34 +0.5
1,226,204 + B158DRAFT_1187 0.83 -3.3
1,226,346 - +0.3
1,226,346 - -1.0

Or see this region's nucleotide sequence