Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0475

Experiment: m.b. Gentamicin 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0472 and B158DRAFT_0473 are separated by 48 nucleotidesB158DRAFT_0473 and B158DRAFT_0474 are separated by 14 nucleotidesB158DRAFT_0474 and B158DRAFT_0475 are separated by 1 nucleotidesB158DRAFT_0475 and B158DRAFT_0476 are separated by 179 nucleotidesB158DRAFT_0476 and B158DRAFT_0477 are separated by 88 nucleotides B158DRAFT_0472: B158DRAFT_0472 - hypothetical protein, at 474,695 to 475,072 _0472 B158DRAFT_0473: B158DRAFT_0473 - hypothetical protein, at 475,121 to 475,354 _0473 B158DRAFT_0474: B158DRAFT_0474 - Uncharacterized protein conserved in bacteria, at 475,369 to 475,968 _0474 B158DRAFT_0475: B158DRAFT_0475 - Predicted redox protein, regulator of disulfide bond formation, at 475,970 to 476,224 _0475 B158DRAFT_0476: B158DRAFT_0476 - DNA-binding ferritin-like protein (oxidative damage protectant), at 476,404 to 476,880 _0476 B158DRAFT_0477: B158DRAFT_0477 - diguanylate cyclase (GGDEF) domain, at 476,969 to 478,843 _0477 Position (kb) 475 476 477Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 474.996 kb on - strand, within B158DRAFT_0472at 474.996 kb on - strand, within B158DRAFT_0472at 475.002 kb on + strand, within B158DRAFT_0472at 475.010 kb on - strand, within B158DRAFT_0472at 475.010 kb on - strand, within B158DRAFT_0472at 475.039 kb on + strandat 475.047 kb on - strandat 475.077 kb on + strandat 475.090 kb on - strandat 475.100 kb on - strandat 475.197 kb on - strand, within B158DRAFT_0473at 475.354 kb on + strandat 475.365 kb on - strandat 475.368 kb on + strandat 475.393 kb on - strandat 475.482 kb on + strand, within B158DRAFT_0474at 475.505 kb on - strand, within B158DRAFT_0474at 475.509 kb on + strand, within B158DRAFT_0474at 475.517 kb on - strand, within B158DRAFT_0474at 475.520 kb on + strand, within B158DRAFT_0474at 475.528 kb on - strand, within B158DRAFT_0474at 475.535 kb on + strand, within B158DRAFT_0474at 475.570 kb on - strand, within B158DRAFT_0474at 475.570 kb on - strand, within B158DRAFT_0474at 475.573 kb on + strand, within B158DRAFT_0474at 475.578 kb on + strand, within B158DRAFT_0474at 475.623 kb on - strand, within B158DRAFT_0474at 475.634 kb on + strand, within B158DRAFT_0474at 475.634 kb on + strand, within B158DRAFT_0474at 475.742 kb on + strand, within B158DRAFT_0474at 475.742 kb on + strand, within B158DRAFT_0474at 475.742 kb on + strand, within B158DRAFT_0474at 475.750 kb on + strand, within B158DRAFT_0474at 475.750 kb on - strand, within B158DRAFT_0474at 475.870 kb on + strand, within B158DRAFT_0474at 475.878 kb on - strand, within B158DRAFT_0474at 475.939 kb on - strandat 475.962 kb on + strandat 475.970 kb on + strandat 476.374 kb on - strandat 476.461 kb on + strand, within B158DRAFT_0476at 476.461 kb on + strand, within B158DRAFT_0476at 476.461 kb on + strand, within B158DRAFT_0476at 476.461 kb on + strand, within B158DRAFT_0476at 476.469 kb on - strand, within B158DRAFT_0476at 476.469 kb on - strand, within B158DRAFT_0476at 476.469 kb on - strand, within B158DRAFT_0476at 476.500 kb on - strand, within B158DRAFT_0476at 476.549 kb on + strand, within B158DRAFT_0476at 476.581 kb on + strand, within B158DRAFT_0476at 476.581 kb on + strand, within B158DRAFT_0476at 476.589 kb on - strand, within B158DRAFT_0476at 476.590 kb on - strand, within B158DRAFT_0476at 476.611 kb on - strand, within B158DRAFT_0476at 476.702 kb on + strand, within B158DRAFT_0476at 476.712 kb on - strand, within B158DRAFT_0476at 476.713 kb on + strand, within B158DRAFT_0476at 476.756 kb on - strand, within B158DRAFT_0476at 476.756 kb on - strand, within B158DRAFT_0476at 476.833 kb on - strandat 476.965 kb on - strandat 476.966 kb on + strandat 477.020 kb on - strandat 477.020 kb on - strandat 477.057 kb on - strandat 477.077 kb on - strandat 477.077 kb on - strandat 477.082 kb on - strandat 477.082 kb on - strandat 477.082 kb on - strandat 477.091 kb on + strandat 477.117 kb on - strandat 477.163 kb on + strand, within B158DRAFT_0477at 477.166 kb on - strand, within B158DRAFT_0477at 477.178 kb on - strand, within B158DRAFT_0477at 477.188 kb on + strand, within B158DRAFT_0477

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.3 mg/ml
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474,996 - B158DRAFT_0472 0.80 -0.1
474,996 - B158DRAFT_0472 0.80 -0.1
475,002 + B158DRAFT_0472 0.81 +0.3
475,010 - B158DRAFT_0472 0.83 -0.2
475,010 - B158DRAFT_0472 0.83 +0.7
475,039 + +0.3
475,047 - -0.3
475,077 + +0.8
475,090 - -0.0
475,100 - -0.5
475,197 - B158DRAFT_0473 0.32 -0.6
475,354 + +1.6
475,365 - -0.1
475,368 + +0.7
475,393 - -0.7
475,482 + B158DRAFT_0474 0.19 -0.8
475,505 - B158DRAFT_0474 0.23 -0.8
475,509 + B158DRAFT_0474 0.23 -2.0
475,517 - B158DRAFT_0474 0.25 +0.1
475,520 + B158DRAFT_0474 0.25 -0.4
475,528 - B158DRAFT_0474 0.27 +1.0
475,535 + B158DRAFT_0474 0.28 -0.8
475,570 - B158DRAFT_0474 0.34 -0.8
475,570 - B158DRAFT_0474 0.34 +0.4
475,573 + B158DRAFT_0474 0.34 -1.8
475,578 + B158DRAFT_0474 0.35 +0.8
475,623 - B158DRAFT_0474 0.42 +0.5
475,634 + B158DRAFT_0474 0.44 -0.5
475,634 + B158DRAFT_0474 0.44 +0.4
475,742 + B158DRAFT_0474 0.62 -0.1
475,742 + B158DRAFT_0474 0.62 +0.3
475,742 + B158DRAFT_0474 0.62 -0.4
475,750 + B158DRAFT_0474 0.64 +0.2
475,750 - B158DRAFT_0474 0.64 -0.1
475,870 + B158DRAFT_0474 0.83 -0.7
475,878 - B158DRAFT_0474 0.85 +0.4
475,939 - +0.1
475,962 + -0.8
475,970 + +0.2
476,374 - -2.8
476,461 + B158DRAFT_0476 0.12 +0.6
476,461 + B158DRAFT_0476 0.12 -1.5
476,461 + B158DRAFT_0476 0.12 -0.3
476,461 + B158DRAFT_0476 0.12 +0.4
476,469 - B158DRAFT_0476 0.14 -1.5
476,469 - B158DRAFT_0476 0.14 -2.8
476,469 - B158DRAFT_0476 0.14 +0.2
476,500 - B158DRAFT_0476 0.20 -0.1
476,549 + B158DRAFT_0476 0.30 +1.8
476,581 + B158DRAFT_0476 0.37 -1.5
476,581 + B158DRAFT_0476 0.37 -3.4
476,589 - B158DRAFT_0476 0.39 +0.9
476,590 - B158DRAFT_0476 0.39 +0.4
476,611 - B158DRAFT_0476 0.43 +1.4
476,702 + B158DRAFT_0476 0.62 -0.5
476,712 - B158DRAFT_0476 0.65 +0.2
476,713 + B158DRAFT_0476 0.65 +0.5
476,756 - B158DRAFT_0476 0.74 -1.2
476,756 - B158DRAFT_0476 0.74 +1.6
476,833 - +0.6
476,965 - +0.5
476,966 + -0.6
477,020 - +1.0
477,020 - -2.1
477,057 - +0.9
477,077 - -0.4
477,077 - -0.3
477,082 - -0.5
477,082 - +0.2
477,082 - +0.6
477,091 + -1.5
477,117 - -1.1
477,163 + B158DRAFT_0477 0.10 -1.7
477,166 - B158DRAFT_0477 0.11 +0.9
477,178 - B158DRAFT_0477 0.11 -4.2
477,188 + B158DRAFT_0477 0.12 -0.3

Or see this region's nucleotide sequence