Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2204

Experiment: m.b. sodium fluoride 30 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2202 and B158DRAFT_2203 overlap by 8 nucleotidesB158DRAFT_2203 and B158DRAFT_2204 overlap by 11 nucleotidesB158DRAFT_2204 and B158DRAFT_2205 are separated by 57 nucleotides B158DRAFT_2202: B158DRAFT_2202 - multisubunit sodium/proton antiporter, MrpD subunit (TC 2.A.63.1), at 345,833 to 347,323 _2202 B158DRAFT_2203: B158DRAFT_2203 - hypothetical protein, at 347,316 to 347,657 _2203 B158DRAFT_2204: B158DRAFT_2204 - multisubunit sodium/proton antiporter, MrpD subunit (TC 2.A.63.1), at 347,647 to 349,338 _2204 B158DRAFT_2205: B158DRAFT_2205 - hypothetical protein, at 349,396 to 351,474 _2205 Position (kb) 347 348 349 350Strain fitness (log2 ratio) -2 -1 0 1at 346.695 kb on - strand, within B158DRAFT_2202at 347.198 kb on + strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.302 kb on + strandat 347.320 kb on - strandat 347.397 kb on - strand, within B158DRAFT_2203at 347.539 kb on + strand, within B158DRAFT_2203at 347.588 kb on + strand, within B158DRAFT_2203at 347.601 kb on + strand, within B158DRAFT_2203at 347.601 kb on + strand, within B158DRAFT_2203at 347.609 kb on - strand, within B158DRAFT_2203at 347.609 kb on - strand, within B158DRAFT_2203at 347.706 kb on + strandat 347.755 kb on - strandat 347.779 kb on + strandat 348.064 kb on - strand, within B158DRAFT_2204at 348.425 kb on + strand, within B158DRAFT_2204at 348.586 kb on + strand, within B158DRAFT_2204at 348.663 kb on + strand, within B158DRAFT_2204at 348.677 kb on - strand, within B158DRAFT_2204at 348.723 kb on + strand, within B158DRAFT_2204at 348.778 kb on + strand, within B158DRAFT_2204at 348.783 kb on + strand, within B158DRAFT_2204at 348.913 kb on + strand, within B158DRAFT_2204at 349.071 kb on + strand, within B158DRAFT_2204at 349.078 kb on + strand, within B158DRAFT_2204at 349.204 kb on + strandat 349.204 kb on + strandat 349.214 kb on + strandat 349.260 kb on - strandat 349.515 kb on + strandat 349.525 kb on + strandat 349.525 kb on + strandat 349.525 kb on + strandat 349.533 kb on - strandat 349.567 kb on - strandat 349.598 kb on - strandat 349.598 kb on - strandat 349.644 kb on - strand, within B158DRAFT_2205at 349.657 kb on - strand, within B158DRAFT_2205at 349.704 kb on + strand, within B158DRAFT_2205at 349.714 kb on + strand, within B158DRAFT_2205at 349.754 kb on - strand, within B158DRAFT_2205at 349.771 kb on - strand, within B158DRAFT_2205at 349.795 kb on + strand, within B158DRAFT_2205at 349.835 kb on + strand, within B158DRAFT_2205at 349.871 kb on + strand, within B158DRAFT_2205at 349.879 kb on - strand, within B158DRAFT_2205at 349.892 kb on + strand, within B158DRAFT_2205at 349.892 kb on + strand, within B158DRAFT_2205at 349.892 kb on + strand, within B158DRAFT_2205at 349.900 kb on - strand, within B158DRAFT_2205at 349.900 kb on - strand, within B158DRAFT_2205at 349.910 kb on - strand, within B158DRAFT_2205at 349.928 kb on + strand, within B158DRAFT_2205at 349.953 kb on + strand, within B158DRAFT_2205at 349.953 kb on + strand, within B158DRAFT_2205at 349.953 kb on + strand, within B158DRAFT_2205at 349.961 kb on - strand, within B158DRAFT_2205at 349.961 kb on - strand, within B158DRAFT_2205at 349.963 kb on + strand, within B158DRAFT_2205at 350.044 kb on + strand, within B158DRAFT_2205at 350.052 kb on - strand, within B158DRAFT_2205at 350.107 kb on - strand, within B158DRAFT_2205at 350.154 kb on + strand, within B158DRAFT_2205at 350.154 kb on + strand, within B158DRAFT_2205at 350.154 kb on + strand, within B158DRAFT_2205at 350.154 kb on + strand, within B158DRAFT_2205at 350.162 kb on - strand, within B158DRAFT_2205at 350.162 kb on - strand, within B158DRAFT_2205at 350.162 kb on - strand, within B158DRAFT_2205at 350.162 kb on - strand, within B158DRAFT_2205at 350.162 kb on - strand, within B158DRAFT_2205at 350.162 kb on - strand, within B158DRAFT_2205at 350.174 kb on + strand, within B158DRAFT_2205at 350.199 kb on + strand, within B158DRAFT_2205at 350.207 kb on - strand, within B158DRAFT_2205at 350.207 kb on - strand, within B158DRAFT_2205at 350.246 kb on - strand, within B158DRAFT_2205at 350.267 kb on + strand, within B158DRAFT_2205at 350.275 kb on - strand, within B158DRAFT_2205at 350.295 kb on - strand, within B158DRAFT_2205at 350.304 kb on - strand, within B158DRAFT_2205at 350.322 kb on + strand, within B158DRAFT_2205at 350.322 kb on + strand, within B158DRAFT_2205at 350.330 kb on - strand, within B158DRAFT_2205at 350.330 kb on - strand, within B158DRAFT_2205at 350.330 kb on - strand, within B158DRAFT_2205at 350.330 kb on - strand, within B158DRAFT_2205

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 30 mM
remove
346,695 - B158DRAFT_2202 0.58 -0.6
347,198 + +0.2
347,239 - -0.9
347,239 - -0.6
347,302 + -2.0
347,320 - -1.4
347,397 - B158DRAFT_2203 0.24 -1.2
347,539 + B158DRAFT_2203 0.65 -0.9
347,588 + B158DRAFT_2203 0.80 -1.2
347,601 + B158DRAFT_2203 0.83 -0.3
347,601 + B158DRAFT_2203 0.83 -0.8
347,609 - B158DRAFT_2203 0.86 +0.4
347,609 - B158DRAFT_2203 0.86 -0.6
347,706 + -1.6
347,755 - +1.4
347,779 + -0.1
348,064 - B158DRAFT_2204 0.25 -1.1
348,425 + B158DRAFT_2204 0.46 -0.0
348,586 + B158DRAFT_2204 0.55 -1.0
348,663 + B158DRAFT_2204 0.60 -0.0
348,677 - B158DRAFT_2204 0.61 -1.4
348,723 + B158DRAFT_2204 0.64 -0.8
348,778 + B158DRAFT_2204 0.67 -1.7
348,783 + B158DRAFT_2204 0.67 -2.5
348,913 + B158DRAFT_2204 0.75 -0.0
349,071 + B158DRAFT_2204 0.84 -1.4
349,078 + B158DRAFT_2204 0.85 -1.0
349,204 + -1.2
349,204 + -1.0
349,214 + -0.8
349,260 - -0.3
349,515 + +0.9
349,525 + -0.3
349,525 + -1.2
349,525 + -0.4
349,533 - -0.1
349,567 - +0.0
349,598 - +0.1
349,598 - -0.5
349,644 - B158DRAFT_2205 0.12 -0.2
349,657 - B158DRAFT_2205 0.13 -0.6
349,704 + B158DRAFT_2205 0.15 -1.4
349,714 + B158DRAFT_2205 0.15 -0.0
349,754 - B158DRAFT_2205 0.17 +0.2
349,771 - B158DRAFT_2205 0.18 -0.1
349,795 + B158DRAFT_2205 0.19 -0.1
349,835 + B158DRAFT_2205 0.21 +0.2
349,871 + B158DRAFT_2205 0.23 +0.4
349,879 - B158DRAFT_2205 0.23 -1.2
349,892 + B158DRAFT_2205 0.24 +0.1
349,892 + B158DRAFT_2205 0.24 +1.2
349,892 + B158DRAFT_2205 0.24 -0.2
349,900 - B158DRAFT_2205 0.24 -0.4
349,900 - B158DRAFT_2205 0.24 +0.1
349,910 - B158DRAFT_2205 0.25 -1.0
349,928 + B158DRAFT_2205 0.26 -0.9
349,953 + B158DRAFT_2205 0.27 +0.2
349,953 + B158DRAFT_2205 0.27 -0.2
349,953 + B158DRAFT_2205 0.27 +0.0
349,961 - B158DRAFT_2205 0.27 -0.0
349,961 - B158DRAFT_2205 0.27 -0.1
349,963 + B158DRAFT_2205 0.27 -0.1
350,044 + B158DRAFT_2205 0.31 +0.2
350,052 - B158DRAFT_2205 0.32 +0.1
350,107 - B158DRAFT_2205 0.34 -0.3
350,154 + B158DRAFT_2205 0.36 +0.4
350,154 + B158DRAFT_2205 0.36 +0.0
350,154 + B158DRAFT_2205 0.36 -0.3
350,154 + B158DRAFT_2205 0.36 -0.1
350,162 - B158DRAFT_2205 0.37 +0.1
350,162 - B158DRAFT_2205 0.37 +0.1
350,162 - B158DRAFT_2205 0.37 -0.9
350,162 - B158DRAFT_2205 0.37 -0.2
350,162 - B158DRAFT_2205 0.37 -0.3
350,162 - B158DRAFT_2205 0.37 -0.4
350,174 + B158DRAFT_2205 0.37 -0.1
350,199 + B158DRAFT_2205 0.39 -0.4
350,207 - B158DRAFT_2205 0.39 -0.1
350,207 - B158DRAFT_2205 0.39 -0.3
350,246 - B158DRAFT_2205 0.41 -0.2
350,267 + B158DRAFT_2205 0.42 -0.1
350,275 - B158DRAFT_2205 0.42 -0.8
350,295 - B158DRAFT_2205 0.43 +0.4
350,304 - B158DRAFT_2205 0.44 -0.7
350,322 + B158DRAFT_2205 0.45 -0.4
350,322 + B158DRAFT_2205 0.45 -1.2
350,330 - B158DRAFT_2205 0.45 +0.1
350,330 - B158DRAFT_2205 0.45 +0.3
350,330 - B158DRAFT_2205 0.45 -2.2
350,330 - B158DRAFT_2205 0.45 +0.5

Or see this region's nucleotide sequence