Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1155

Experiment: m.b. sodium fluoride 30 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1153 and B158DRAFT_1154 are separated by 55 nucleotidesB158DRAFT_1154 and B158DRAFT_1155 are separated by 25 nucleotidesB158DRAFT_1155 and B158DRAFT_1156 are separated by 5 nucleotides B158DRAFT_1153: B158DRAFT_1153 - histidyl-tRNA synthetase (EC 6.1.1.21), at 1,189,075 to 1,190,346 _1153 B158DRAFT_1154: B158DRAFT_1154 - Uncharacterized protein conserved in bacteria, at 1,190,402 to 1,191,031 _1154 B158DRAFT_1155: B158DRAFT_1155 - Beta-barrel assembly machine subunit BamB, at 1,191,057 to 1,192,223 _1155 B158DRAFT_1156: B158DRAFT_1156 - ribosome-associated GTPase EngA, at 1,192,229 to 1,193,632 _1156 Position (kb) 1191 1192 1193Strain fitness (log2 ratio) -2 -1 0 1 2at 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.362 kb on - strandat 1190.362 kb on - strandat 1190.520 kb on + strand, within B158DRAFT_1154at 1190.543 kb on - strand, within B158DRAFT_1154at 1190.566 kb on - strand, within B158DRAFT_1154at 1190.618 kb on - strand, within B158DRAFT_1154at 1190.689 kb on - strand, within B158DRAFT_1154at 1190.856 kb on + strand, within B158DRAFT_1154

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 30 mM
remove
1,190,354 + -0.6
1,190,354 + -0.4
1,190,354 + -0.5
1,190,354 + -1.7
1,190,354 + +0.1
1,190,354 + -0.8
1,190,354 + -0.7
1,190,354 + -0.4
1,190,362 - -2.5
1,190,362 - -2.0
1,190,520 + B158DRAFT_1154 0.19 -0.7
1,190,543 - B158DRAFT_1154 0.22 -2.7
1,190,566 - B158DRAFT_1154 0.26 -2.3
1,190,618 - B158DRAFT_1154 0.34 +1.9
1,190,689 - B158DRAFT_1154 0.46 -0.8
1,190,856 + B158DRAFT_1154 0.72 -2.3

Or see this region's nucleotide sequence