Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0748

Experiment: m.b. sodium fluoride 30 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0747 and B158DRAFT_0748 are separated by 71 nucleotidesB158DRAFT_0748 and B158DRAFT_0749 are separated by 170 nucleotidesB158DRAFT_0749 and B158DRAFT_0750 are separated by 168 nucleotides B158DRAFT_0747: B158DRAFT_0747 - ATP-dependent protease HslVU, ATPase subunit, at 751,222 to 752,556 _0747 B158DRAFT_0748: B158DRAFT_0748 - ATP-dependent protease HslVU, peptidase subunit, at 752,628 to 753,167 _0748 B158DRAFT_0749: B158DRAFT_0749 - Cell division protein, at 753,338 to 753,898 _0749 B158DRAFT_0750: B158DRAFT_0750 - replication restart DNA helicase PriA, at 754,067 to 756,259 _0750 Position (kb) 752 753 754Strain fitness (log2 ratio) -2 -1 0 1 2at 751.685 kb on + strand, within B158DRAFT_0747at 751.698 kb on - strand, within B158DRAFT_0747at 751.698 kb on - strand, within B158DRAFT_0747at 751.700 kb on + strand, within B158DRAFT_0747at 751.700 kb on + strand, within B158DRAFT_0747at 751.708 kb on - strand, within B158DRAFT_0747at 751.722 kb on - strand, within B158DRAFT_0747at 751.722 kb on - strand, within B158DRAFT_0747at 751.724 kb on + strand, within B158DRAFT_0747at 751.806 kb on + strand, within B158DRAFT_0747at 751.809 kb on - strand, within B158DRAFT_0747at 751.891 kb on + strand, within B158DRAFT_0747at 751.978 kb on + strand, within B158DRAFT_0747at 751.978 kb on + strand, within B158DRAFT_0747at 752.077 kb on + strand, within B158DRAFT_0747at 752.077 kb on + strand, within B158DRAFT_0747at 752.085 kb on - strand, within B158DRAFT_0747at 752.149 kb on + strand, within B158DRAFT_0747at 752.149 kb on + strand, within B158DRAFT_0747at 752.149 kb on + strand, within B158DRAFT_0747at 752.157 kb on - strand, within B158DRAFT_0747at 752.157 kb on - strand, within B158DRAFT_0747at 752.157 kb on - strand, within B158DRAFT_0747at 752.157 kb on - strand, within B158DRAFT_0747at 752.157 kb on - strand, within B158DRAFT_0747at 752.197 kb on + strand, within B158DRAFT_0747at 752.197 kb on + strand, within B158DRAFT_0747at 752.205 kb on - strand, within B158DRAFT_0747at 752.285 kb on + strand, within B158DRAFT_0747at 752.298 kb on - strand, within B158DRAFT_0747at 752.305 kb on - strand, within B158DRAFT_0747at 752.369 kb on + strand, within B158DRAFT_0747at 752.377 kb on - strand, within B158DRAFT_0747at 752.430 kb on + strandat 752.430 kb on + strandat 752.433 kb on - strandat 752.568 kb on - strandat 752.624 kb on - strandat 752.650 kb on + strandat 752.650 kb on - strandat 752.650 kb on - strandat 752.699 kb on - strand, within B158DRAFT_0748at 752.704 kb on - strand, within B158DRAFT_0748at 752.744 kb on + strand, within B158DRAFT_0748at 752.752 kb on + strand, within B158DRAFT_0748at 752.800 kb on + strand, within B158DRAFT_0748at 752.806 kb on + strand, within B158DRAFT_0748at 752.808 kb on - strand, within B158DRAFT_0748at 752.816 kb on - strand, within B158DRAFT_0748at 752.818 kb on - strand, within B158DRAFT_0748at 752.860 kb on + strand, within B158DRAFT_0748at 752.899 kb on - strand, within B158DRAFT_0748at 752.918 kb on + strand, within B158DRAFT_0748at 752.953 kb on + strand, within B158DRAFT_0748at 752.954 kb on - strand, within B158DRAFT_0748at 752.984 kb on + strand, within B158DRAFT_0748at 752.992 kb on - strand, within B158DRAFT_0748at 753.103 kb on + strand, within B158DRAFT_0748at 753.103 kb on + strand, within B158DRAFT_0748at 753.113 kb on + strand, within B158DRAFT_0748at 753.185 kb on + strandat 753.185 kb on + strandat 753.185 kb on + strandat 753.185 kb on + strandat 753.193 kb on - strandat 753.193 kb on - strandat 753.193 kb on - strandat 753.193 kb on - strandat 753.210 kb on + strandat 753.218 kb on - strandat 753.313 kb on + strandat 753.313 kb on + strandat 753.313 kb on + strandat 753.875 kb on - strandat 753.906 kb on - strandat 753.908 kb on - strandat 754.023 kb on + strandat 754.031 kb on - strandat 754.050 kb on + strandat 754.116 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 30 mM
remove
751,685 + B158DRAFT_0747 0.35 +0.2
751,698 - B158DRAFT_0747 0.36 -0.6
751,698 - B158DRAFT_0747 0.36 -0.7
751,700 + B158DRAFT_0747 0.36 -0.3
751,700 + B158DRAFT_0747 0.36 -0.8
751,708 - B158DRAFT_0747 0.36 -1.5
751,722 - B158DRAFT_0747 0.37 -0.2
751,722 - B158DRAFT_0747 0.37 -0.5
751,724 + B158DRAFT_0747 0.38 -0.5
751,806 + B158DRAFT_0747 0.44 +0.2
751,809 - B158DRAFT_0747 0.44 +0.8
751,891 + B158DRAFT_0747 0.50 -0.3
751,978 + B158DRAFT_0747 0.57 +1.3
751,978 + B158DRAFT_0747 0.57 -1.9
752,077 + B158DRAFT_0747 0.64 +0.4
752,077 + B158DRAFT_0747 0.64 +0.1
752,085 - B158DRAFT_0747 0.65 +0.2
752,149 + B158DRAFT_0747 0.69 -0.2
752,149 + B158DRAFT_0747 0.69 +0.4
752,149 + B158DRAFT_0747 0.69 -0.5
752,157 - B158DRAFT_0747 0.70 -0.6
752,157 - B158DRAFT_0747 0.70 -0.5
752,157 - B158DRAFT_0747 0.70 -0.5
752,157 - B158DRAFT_0747 0.70 -1.6
752,157 - B158DRAFT_0747 0.70 -0.3
752,197 + B158DRAFT_0747 0.73 -0.7
752,197 + B158DRAFT_0747 0.73 -0.2
752,205 - B158DRAFT_0747 0.74 -0.2
752,285 + B158DRAFT_0747 0.80 -0.1
752,298 - B158DRAFT_0747 0.81 +0.8
752,305 - B158DRAFT_0747 0.81 -0.5
752,369 + B158DRAFT_0747 0.86 +0.1
752,377 - B158DRAFT_0747 0.87 +1.3
752,430 + +0.4
752,430 + -0.7
752,433 - +2.5
752,568 - +0.1
752,624 - -0.9
752,650 + +0.1
752,650 - +0.2
752,650 - +0.4
752,699 - B158DRAFT_0748 0.13 -0.4
752,704 - B158DRAFT_0748 0.14 -0.6
752,744 + B158DRAFT_0748 0.21 +0.5
752,752 + B158DRAFT_0748 0.23 -0.1
752,800 + B158DRAFT_0748 0.32 -0.3
752,806 + B158DRAFT_0748 0.33 -0.3
752,808 - B158DRAFT_0748 0.33 +0.3
752,816 - B158DRAFT_0748 0.35 -1.3
752,818 - B158DRAFT_0748 0.35 -0.8
752,860 + B158DRAFT_0748 0.43 -0.0
752,899 - B158DRAFT_0748 0.50 -0.0
752,918 + B158DRAFT_0748 0.54 -0.2
752,953 + B158DRAFT_0748 0.60 -0.5
752,954 - B158DRAFT_0748 0.60 -0.3
752,984 + B158DRAFT_0748 0.66 -1.1
752,992 - B158DRAFT_0748 0.67 +0.5
753,103 + B158DRAFT_0748 0.88 -0.0
753,103 + B158DRAFT_0748 0.88 +0.2
753,113 + B158DRAFT_0748 0.90 +0.0
753,185 + +0.8
753,185 + -0.1
753,185 + +0.1
753,185 + -0.3
753,193 - +0.6
753,193 - +0.6
753,193 - -1.3
753,193 - +0.7
753,210 + -0.5
753,218 - -0.1
753,313 + -0.8
753,313 + -0.9
753,313 + -0.0
753,875 - -2.1
753,906 - -1.2
753,908 - -0.1
754,023 + -0.6
754,031 - -0.7
754,050 + -0.7
754,116 - +2.1

Or see this region's nucleotide sequence