Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0242

Experiment: m.b. sodium fluoride 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0240 and B158DRAFT_0242 are separated by 398 nucleotidesB158DRAFT_0242 and B158DRAFT_0243 are separated by 137 nucleotidesB158DRAFT_0243 and B158DRAFT_0244 are separated by 3 nucleotides B158DRAFT_0240: B158DRAFT_0240 - Lactate dehydrogenase and related dehydrogenases, at 249,489 to 250,442 _0240 B158DRAFT_0242: B158DRAFT_0242 - hypothetical protein, at 250,841 to 251,404 _0242 B158DRAFT_0243: B158DRAFT_0243 - haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 251,542 to 252,207 _0243 B158DRAFT_0244: B158DRAFT_0244 - tyrosine recombinase XerC subunit, at 252,211 to 253,110 _0244 Position (kb) 250 251 252Strain fitness (log2 ratio) -3 -2 -1 0 1at 249.961 kb on + strand, within B158DRAFT_0240at 249.968 kb on - strand, within B158DRAFT_0240at 249.976 kb on + strand, within B158DRAFT_0240at 250.025 kb on - strand, within B158DRAFT_0240at 250.080 kb on + strand, within B158DRAFT_0240at 250.080 kb on + strand, within B158DRAFT_0240at 250.088 kb on - strand, within B158DRAFT_0240at 250.090 kb on + strand, within B158DRAFT_0240at 250.092 kb on + strand, within B158DRAFT_0240at 250.100 kb on - strand, within B158DRAFT_0240at 250.101 kb on - strand, within B158DRAFT_0240at 250.230 kb on + strand, within B158DRAFT_0240at 250.244 kb on - strand, within B158DRAFT_0240at 250.304 kb on + strand, within B158DRAFT_0240at 250.304 kb on + strand, within B158DRAFT_0240at 250.304 kb on + strand, within B158DRAFT_0240at 250.304 kb on + strand, within B158DRAFT_0240at 250.340 kb on + strand, within B158DRAFT_0240at 250.346 kb on - strand, within B158DRAFT_0240at 250.354 kb on - strandat 250.368 kb on + strandat 250.406 kb on + strandat 250.421 kb on - strandat 250.461 kb on - strandat 250.514 kb on + strandat 250.896 kb on + strandat 250.896 kb on + strandat 250.896 kb on + strandat 250.904 kb on - strand, within B158DRAFT_0242at 250.904 kb on - strand, within B158DRAFT_0242at 250.925 kb on - strand, within B158DRAFT_0242at 250.982 kb on - strand, within B158DRAFT_0242at 251.053 kb on - strand, within B158DRAFT_0242at 251.102 kb on + strand, within B158DRAFT_0242at 251.110 kb on - strand, within B158DRAFT_0242at 251.110 kb on - strand, within B158DRAFT_0242at 251.110 kb on - strand, within B158DRAFT_0242at 251.110 kb on - strand, within B158DRAFT_0242at 251.110 kb on - strand, within B158DRAFT_0242at 251.120 kb on - strand, within B158DRAFT_0242at 251.362 kb on + strandat 251.377 kb on - strandat 251.465 kb on - strandat 251.465 kb on - strandat 251.888 kb on + strand, within B158DRAFT_0243at 251.888 kb on + strand, within B158DRAFT_0243at 251.888 kb on + strand, within B158DRAFT_0243at 251.888 kb on + strand, within B158DRAFT_0243at 251.888 kb on + strand, within B158DRAFT_0243at 251.909 kb on + strand, within B158DRAFT_0243at 251.909 kb on + strand, within B158DRAFT_0243at 252.105 kb on - strand, within B158DRAFT_0243at 252.325 kb on + strand, within B158DRAFT_0244at 252.335 kb on + strand, within B158DRAFT_0244at 252.379 kb on - strand, within B158DRAFT_0244at 252.379 kb on - strand, within B158DRAFT_0244

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 30 mM
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249,961 + B158DRAFT_0240 0.49 -0.8
249,968 - B158DRAFT_0240 0.50 -0.5
249,976 + B158DRAFT_0240 0.51 -0.3
250,025 - B158DRAFT_0240 0.56 -1.4
250,080 + B158DRAFT_0240 0.62 +0.0
250,080 + B158DRAFT_0240 0.62 +0.0
250,088 - B158DRAFT_0240 0.63 +0.4
250,090 + B158DRAFT_0240 0.63 -0.7
250,092 + B158DRAFT_0240 0.63 +0.1
250,100 - B158DRAFT_0240 0.64 +0.4
250,101 - B158DRAFT_0240 0.64 -0.6
250,230 + B158DRAFT_0240 0.78 -0.2
250,244 - B158DRAFT_0240 0.79 +0.0
250,304 + B158DRAFT_0240 0.85 -0.0
250,304 + B158DRAFT_0240 0.85 -0.4
250,304 + B158DRAFT_0240 0.85 +0.1
250,304 + B158DRAFT_0240 0.85 -2.0
250,340 + B158DRAFT_0240 0.89 -0.3
250,346 - B158DRAFT_0240 0.90 -0.5
250,354 - -0.4
250,368 + -0.4
250,406 + -0.2
250,421 - -0.6
250,461 - +0.2
250,514 + +0.1
250,896 + -0.4
250,896 + -0.9
250,896 + -1.0
250,904 - B158DRAFT_0242 0.11 -0.1
250,904 - B158DRAFT_0242 0.11 -0.3
250,925 - B158DRAFT_0242 0.15 -0.2
250,982 - B158DRAFT_0242 0.25 -1.1
251,053 - B158DRAFT_0242 0.38 +0.2
251,102 + B158DRAFT_0242 0.46 -0.6
251,110 - B158DRAFT_0242 0.48 -0.3
251,110 - B158DRAFT_0242 0.48 -0.1
251,110 - B158DRAFT_0242 0.48 -0.3
251,110 - B158DRAFT_0242 0.48 +0.4
251,110 - B158DRAFT_0242 0.48 +0.8
251,120 - B158DRAFT_0242 0.49 +0.1
251,362 + -0.4
251,377 - -0.6
251,465 - +0.4
251,465 - -0.3
251,888 + B158DRAFT_0243 0.52 -2.6
251,888 + B158DRAFT_0243 0.52 -1.7
251,888 + B158DRAFT_0243 0.52 -2.4
251,888 + B158DRAFT_0243 0.52 -3.1
251,888 + B158DRAFT_0243 0.52 -1.9
251,909 + B158DRAFT_0243 0.55 -1.8
251,909 + B158DRAFT_0243 0.55 -3.6
252,105 - B158DRAFT_0243 0.85 -3.4
252,325 + B158DRAFT_0244 0.13 -2.1
252,335 + B158DRAFT_0244 0.14 -0.0
252,379 - B158DRAFT_0244 0.19 -0.4
252,379 - B158DRAFT_0244 0.19 -0.7

Or see this region's nucleotide sequence