Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2331

Experiment: m.b. Tetracycline 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2330 and B158DRAFT_2331 are separated by 4 nucleotidesB158DRAFT_2331 and B158DRAFT_2332 are separated by 83 nucleotidesB158DRAFT_2332 and B158DRAFT_2333 are separated by 74 nucleotides B158DRAFT_2330: B158DRAFT_2330 - Predicted N-acetylglucosaminyl transferase, at 496,668 to 497,843 _2330 B158DRAFT_2331: B158DRAFT_2331 - orotidine-5'-phosphate decarboxylase (EC 4.1.1.23), at 497,848 to 498,543 _2331 B158DRAFT_2332: B158DRAFT_2332 - competence protein ComEA helix-hairpin-helix repeat region, at 498,627 to 498,938 _2332 B158DRAFT_2333: B158DRAFT_2333 - rhomboid family GlyGly-CTERM serine protease, at 499,013 to 499,630 _2333 Position (kb) 497 498 499Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 497.201 kb on + strand, within B158DRAFT_2330at 497.450 kb on + strand, within B158DRAFT_2330at 497.606 kb on + strand, within B158DRAFT_2330at 497.606 kb on + strand, within B158DRAFT_2330at 497.606 kb on + strand, within B158DRAFT_2330at 497.625 kb on + strand, within B158DRAFT_2330at 497.650 kb on + strand, within B158DRAFT_2330at 497.791 kb on + strandat 497.791 kb on + strandat 497.791 kb on + strandat 497.791 kb on + strandat 497.791 kb on + strandat 497.799 kb on + strandat 498.540 kb on - strandat 498.719 kb on + strand, within B158DRAFT_2332at 498.719 kb on + strand, within B158DRAFT_2332at 498.719 kb on + strand, within B158DRAFT_2332at 498.727 kb on - strand, within B158DRAFT_2332at 498.727 kb on - strand, within B158DRAFT_2332at 498.740 kb on + strand, within B158DRAFT_2332at 498.748 kb on - strand, within B158DRAFT_2332at 498.748 kb on - strand, within B158DRAFT_2332at 498.780 kb on - strand, within B158DRAFT_2332at 498.789 kb on + strand, within B158DRAFT_2332at 498.789 kb on + strand, within B158DRAFT_2332at 498.789 kb on + strand, within B158DRAFT_2332at 498.789 kb on + strand, within B158DRAFT_2332at 498.799 kb on - strand, within B158DRAFT_2332at 498.807 kb on - strand, within B158DRAFT_2332at 498.854 kb on + strand, within B158DRAFT_2332at 498.854 kb on + strand, within B158DRAFT_2332at 498.862 kb on - strand, within B158DRAFT_2332at 498.880 kb on - strand, within B158DRAFT_2332at 498.975 kb on - strandat 498.975 kb on - strandat 499.018 kb on + strandat 499.026 kb on - strandat 499.072 kb on + strandat 499.077 kb on + strand, within B158DRAFT_2333at 499.085 kb on - strand, within B158DRAFT_2333at 499.085 kb on - strand, within B158DRAFT_2333at 499.085 kb on - strand, within B158DRAFT_2333at 499.085 kb on - strand, within B158DRAFT_2333at 499.085 kb on - strand, within B158DRAFT_2333at 499.089 kb on - strand, within B158DRAFT_2333at 499.093 kb on + strand, within B158DRAFT_2333at 499.101 kb on - strand, within B158DRAFT_2333at 499.129 kb on + strand, within B158DRAFT_2333at 499.227 kb on + strand, within B158DRAFT_2333at 499.227 kb on + strand, within B158DRAFT_2333at 499.227 kb on + strand, within B158DRAFT_2333at 499.227 kb on + strand, within B158DRAFT_2333at 499.235 kb on - strand, within B158DRAFT_2333at 499.235 kb on - strand, within B158DRAFT_2333at 499.235 kb on - strand, within B158DRAFT_2333at 499.235 kb on - strand, within B158DRAFT_2333at 499.235 kb on - strand, within B158DRAFT_2333at 499.235 kb on - strand, within B158DRAFT_2333at 499.235 kb on - strand, within B158DRAFT_2333at 499.235 kb on - strand, within B158DRAFT_2333at 499.326 kb on + strand, within B158DRAFT_2333at 499.326 kb on + strand, within B158DRAFT_2333at 499.326 kb on + strand, within B158DRAFT_2333at 499.326 kb on + strand, within B158DRAFT_2333at 499.326 kb on + strand, within B158DRAFT_2333at 499.326 kb on + strand, within B158DRAFT_2333at 499.334 kb on - strand, within B158DRAFT_2333at 499.334 kb on - strand, within B158DRAFT_2333at 499.334 kb on - strand, within B158DRAFT_2333at 499.442 kb on + strand, within B158DRAFT_2333at 499.442 kb on + strand, within B158DRAFT_2333at 499.442 kb on + strand, within B158DRAFT_2333at 499.442 kb on + strand, within B158DRAFT_2333at 499.442 kb on - strand, within B158DRAFT_2333at 499.450 kb on - strand, within B158DRAFT_2333at 499.450 kb on - strand, within B158DRAFT_2333at 499.450 kb on - strand, within B158DRAFT_2333at 499.450 kb on - strand, within B158DRAFT_2333at 499.450 kb on - strand, within B158DRAFT_2333at 499.461 kb on + strand, within B158DRAFT_2333at 499.461 kb on + strand, within B158DRAFT_2333at 499.462 kb on - strand, within B158DRAFT_2333at 499.462 kb on - strand, within B158DRAFT_2333at 499.463 kb on + strand, within B158DRAFT_2333at 499.469 kb on - strand, within B158DRAFT_2333at 499.469 kb on - strand, within B158DRAFT_2333at 499.477 kb on - strand, within B158DRAFT_2333at 499.499 kb on + strand, within B158DRAFT_2333at 499.507 kb on - strand, within B158DRAFT_2333at 499.507 kb on - strand, within B158DRAFT_2333at 499.507 kb on - strand, within B158DRAFT_2333at 499.534 kb on - strand, within B158DRAFT_2333at 499.534 kb on - strand, within B158DRAFT_2333

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.4 mg/ml
remove
497,201 + B158DRAFT_2330 0.45 +2.1
497,450 + B158DRAFT_2330 0.66 +4.1
497,606 + B158DRAFT_2330 0.80 +1.4
497,606 + B158DRAFT_2330 0.80 +2.2
497,606 + B158DRAFT_2330 0.80 +2.4
497,625 + B158DRAFT_2330 0.81 +3.9
497,650 + B158DRAFT_2330 0.84 +1.7
497,791 + +3.6
497,791 + +2.8
497,791 + +3.2
497,791 + +2.4
497,791 + +2.4
497,799 + +3.5
498,540 - +0.3
498,719 + B158DRAFT_2332 0.29 -0.4
498,719 + B158DRAFT_2332 0.29 -1.8
498,719 + B158DRAFT_2332 0.29 -0.8
498,727 - B158DRAFT_2332 0.32 -0.1
498,727 - B158DRAFT_2332 0.32 +1.0
498,740 + B158DRAFT_2332 0.36 +0.0
498,748 - B158DRAFT_2332 0.39 -0.2
498,748 - B158DRAFT_2332 0.39 -0.7
498,780 - B158DRAFT_2332 0.49 -0.3
498,789 + B158DRAFT_2332 0.52 -1.3
498,789 + B158DRAFT_2332 0.52 +0.2
498,789 + B158DRAFT_2332 0.52 -0.5
498,789 + B158DRAFT_2332 0.52 -1.6
498,799 - B158DRAFT_2332 0.55 +0.0
498,807 - B158DRAFT_2332 0.58 +0.3
498,854 + B158DRAFT_2332 0.73 -0.2
498,854 + B158DRAFT_2332 0.73 +0.0
498,862 - B158DRAFT_2332 0.75 -0.7
498,880 - B158DRAFT_2332 0.81 -0.4
498,975 - -0.5
498,975 - -0.2
499,018 + +0.4
499,026 - +0.2
499,072 + +0.3
499,077 + B158DRAFT_2333 0.10 +0.4
499,085 - B158DRAFT_2333 0.12 -0.2
499,085 - B158DRAFT_2333 0.12 -0.6
499,085 - B158DRAFT_2333 0.12 -1.5
499,085 - B158DRAFT_2333 0.12 +0.2
499,085 - B158DRAFT_2333 0.12 -0.4
499,089 - B158DRAFT_2333 0.12 -0.4
499,093 + B158DRAFT_2333 0.13 -1.4
499,101 - B158DRAFT_2333 0.14 -0.3
499,129 + B158DRAFT_2333 0.19 +0.2
499,227 + B158DRAFT_2333 0.35 +0.5
499,227 + B158DRAFT_2333 0.35 -3.4
499,227 + B158DRAFT_2333 0.35 +0.7
499,227 + B158DRAFT_2333 0.35 +0.9
499,235 - B158DRAFT_2333 0.36 -1.1
499,235 - B158DRAFT_2333 0.36 +0.2
499,235 - B158DRAFT_2333 0.36 -0.0
499,235 - B158DRAFT_2333 0.36 -1.7
499,235 - B158DRAFT_2333 0.36 -0.4
499,235 - B158DRAFT_2333 0.36 +0.3
499,235 - B158DRAFT_2333 0.36 -0.9
499,235 - B158DRAFT_2333 0.36 -0.1
499,326 + B158DRAFT_2333 0.51 +0.5
499,326 + B158DRAFT_2333 0.51 +0.1
499,326 + B158DRAFT_2333 0.51 +0.3
499,326 + B158DRAFT_2333 0.51 -0.0
499,326 + B158DRAFT_2333 0.51 +0.1
499,326 + B158DRAFT_2333 0.51 -1.6
499,334 - B158DRAFT_2333 0.52 -0.7
499,334 - B158DRAFT_2333 0.52 -0.5
499,334 - B158DRAFT_2333 0.52 -0.4
499,442 + B158DRAFT_2333 0.69 +0.2
499,442 + B158DRAFT_2333 0.69 -0.2
499,442 + B158DRAFT_2333 0.69 -0.7
499,442 + B158DRAFT_2333 0.69 -0.6
499,442 - B158DRAFT_2333 0.69 -0.2
499,450 - B158DRAFT_2333 0.71 -0.0
499,450 - B158DRAFT_2333 0.71 +0.9
499,450 - B158DRAFT_2333 0.71 +0.3
499,450 - B158DRAFT_2333 0.71 -2.2
499,450 - B158DRAFT_2333 0.71 -0.6
499,461 + B158DRAFT_2333 0.72 -0.4
499,461 + B158DRAFT_2333 0.72 +0.1
499,462 - B158DRAFT_2333 0.73 +1.0
499,462 - B158DRAFT_2333 0.73 +0.1
499,463 + B158DRAFT_2333 0.73 +0.1
499,469 - B158DRAFT_2333 0.74 -0.2
499,469 - B158DRAFT_2333 0.74 +0.6
499,477 - B158DRAFT_2333 0.75 +0.9
499,499 + B158DRAFT_2333 0.79 -0.4
499,507 - B158DRAFT_2333 0.80 -0.5
499,507 - B158DRAFT_2333 0.80 +0.1
499,507 - B158DRAFT_2333 0.80 -0.3
499,534 - B158DRAFT_2333 0.84 +0.6
499,534 - B158DRAFT_2333 0.84 +0.9

Or see this region's nucleotide sequence