Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1619

Experiment: m.b. Tetracycline 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1618 and B158DRAFT_1619 are separated by 44 nucleotidesB158DRAFT_1619 and B158DRAFT_1620 are separated by 9 nucleotides B158DRAFT_1618: B158DRAFT_1618 - sodium/proton antiporter, NhaD family (TC 2.A.62), at 1,678,337 to 1,679,740 _1618 B158DRAFT_1619: B158DRAFT_1619 - choline/carnitine/betaine transport, at 1,679,785 to 1,681,398 _1619 B158DRAFT_1620: B158DRAFT_1620 - hypothetical protein, at 1,681,408 to 1,682,511 _1620 Position (kb) 1679 1680 1681 1682Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1678.808 kb on + strand, within B158DRAFT_1618at 1678.808 kb on + strand, within B158DRAFT_1618at 1678.808 kb on + strand, within B158DRAFT_1618at 1678.816 kb on - strand, within B158DRAFT_1618at 1678.816 kb on - strand, within B158DRAFT_1618at 1678.816 kb on - strand, within B158DRAFT_1618at 1678.816 kb on - strand, within B158DRAFT_1618at 1678.818 kb on - strand, within B158DRAFT_1618at 1678.818 kb on - strand, within B158DRAFT_1618at 1678.820 kb on + strand, within B158DRAFT_1618at 1678.877 kb on + strand, within B158DRAFT_1618at 1678.885 kb on - strand, within B158DRAFT_1618at 1678.885 kb on - strand, within B158DRAFT_1618at 1678.895 kb on - strand, within B158DRAFT_1618at 1679.002 kb on + strand, within B158DRAFT_1618at 1679.071 kb on + strand, within B158DRAFT_1618at 1679.079 kb on + strand, within B158DRAFT_1618at 1679.087 kb on - strand, within B158DRAFT_1618at 1679.089 kb on + strand, within B158DRAFT_1618at 1679.089 kb on + strand, within B158DRAFT_1618at 1679.089 kb on + strand, within B158DRAFT_1618at 1679.097 kb on - strand, within B158DRAFT_1618at 1679.097 kb on - strand, within B158DRAFT_1618at 1679.111 kb on - strand, within B158DRAFT_1618at 1679.214 kb on + strand, within B158DRAFT_1618at 1679.283 kb on + strand, within B158DRAFT_1618at 1679.307 kb on - strand, within B158DRAFT_1618at 1679.325 kb on + strand, within B158DRAFT_1618at 1679.325 kb on + strand, within B158DRAFT_1618at 1679.333 kb on - strand, within B158DRAFT_1618at 1679.335 kb on + strand, within B158DRAFT_1618at 1679.343 kb on - strand, within B158DRAFT_1618at 1679.367 kb on + strand, within B158DRAFT_1618at 1679.367 kb on + strand, within B158DRAFT_1618at 1679.367 kb on + strand, within B158DRAFT_1618at 1679.367 kb on + strand, within B158DRAFT_1618at 1679.375 kb on - strand, within B158DRAFT_1618at 1679.375 kb on - strand, within B158DRAFT_1618at 1679.375 kb on - strand, within B158DRAFT_1618at 1679.375 kb on - strand, within B158DRAFT_1618at 1679.375 kb on - strand, within B158DRAFT_1618at 1679.423 kb on + strand, within B158DRAFT_1618at 1679.487 kb on - strand, within B158DRAFT_1618at 1679.511 kb on + strand, within B158DRAFT_1618at 1679.516 kb on + strand, within B158DRAFT_1618at 1679.524 kb on - strand, within B158DRAFT_1618at 1679.576 kb on + strand, within B158DRAFT_1618at 1679.576 kb on + strand, within B158DRAFT_1618at 1679.630 kb on + strandat 1679.695 kb on - strandat 1679.695 kb on - strandat 1679.695 kb on - strandat 1679.827 kb on - strandat 1679.856 kb on - strandat 1679.872 kb on + strandat 1679.880 kb on - strandat 1679.935 kb on + strandat 1679.943 kb on - strandat 1679.977 kb on - strand, within B158DRAFT_1619at 1679.996 kb on + strand, within B158DRAFT_1619at 1680.004 kb on - strand, within B158DRAFT_1619at 1680.015 kb on + strand, within B158DRAFT_1619at 1680.015 kb on + strand, within B158DRAFT_1619at 1680.023 kb on - strand, within B158DRAFT_1619at 1680.099 kb on + strand, within B158DRAFT_1619at 1680.169 kb on - strand, within B158DRAFT_1619at 1680.192 kb on - strand, within B158DRAFT_1619at 1680.195 kb on + strand, within B158DRAFT_1619at 1680.195 kb on + strand, within B158DRAFT_1619at 1680.203 kb on - strand, within B158DRAFT_1619at 1680.231 kb on - strand, within B158DRAFT_1619at 1680.238 kb on + strand, within B158DRAFT_1619at 1680.241 kb on - strand, within B158DRAFT_1619at 1680.253 kb on + strand, within B158DRAFT_1619at 1680.253 kb on + strand, within B158DRAFT_1619at 1680.253 kb on + strand, within B158DRAFT_1619at 1680.261 kb on - strand, within B158DRAFT_1619at 1680.261 kb on - strand, within B158DRAFT_1619at 1680.261 kb on - strand, within B158DRAFT_1619at 1680.282 kb on + strand, within B158DRAFT_1619at 1680.290 kb on - strand, within B158DRAFT_1619at 1680.298 kb on - strand, within B158DRAFT_1619at 1680.329 kb on - strand, within B158DRAFT_1619at 1680.357 kb on + strand, within B158DRAFT_1619at 1680.371 kb on + strand, within B158DRAFT_1619at 1680.379 kb on - strand, within B158DRAFT_1619at 1680.380 kb on + strand, within B158DRAFT_1619at 1680.387 kb on - strand, within B158DRAFT_1619at 1680.387 kb on - strand, within B158DRAFT_1619at 1680.388 kb on - strand, within B158DRAFT_1619at 1680.389 kb on + strand, within B158DRAFT_1619at 1680.512 kb on + strand, within B158DRAFT_1619at 1680.527 kb on + strand, within B158DRAFT_1619at 1680.540 kb on + strand, within B158DRAFT_1619at 1680.548 kb on - strand, within B158DRAFT_1619at 1680.548 kb on - strand, within B158DRAFT_1619at 1680.548 kb on - strand, within B158DRAFT_1619at 1680.552 kb on + strand, within B158DRAFT_1619at 1680.560 kb on - strand, within B158DRAFT_1619at 1680.560 kb on - strand, within B158DRAFT_1619at 1680.588 kb on + strand, within B158DRAFT_1619at 1680.594 kb on + strand, within B158DRAFT_1619at 1680.609 kb on - strand, within B158DRAFT_1619at 1680.668 kb on + strand, within B158DRAFT_1619at 1680.799 kb on + strand, within B158DRAFT_1619at 1680.807 kb on - strand, within B158DRAFT_1619at 1680.876 kb on + strand, within B158DRAFT_1619at 1680.884 kb on - strand, within B158DRAFT_1619at 1680.889 kb on - strand, within B158DRAFT_1619at 1680.928 kb on + strand, within B158DRAFT_1619at 1680.936 kb on - strand, within B158DRAFT_1619at 1680.980 kb on + strand, within B158DRAFT_1619at 1680.992 kb on + strand, within B158DRAFT_1619at 1680.992 kb on + strand, within B158DRAFT_1619at 1680.992 kb on + strand, within B158DRAFT_1619at 1681.000 kb on + strand, within B158DRAFT_1619at 1681.012 kb on + strand, within B158DRAFT_1619at 1681.012 kb on + strand, within B158DRAFT_1619at 1681.012 kb on + strand, within B158DRAFT_1619at 1681.020 kb on - strand, within B158DRAFT_1619at 1681.119 kb on - strand, within B158DRAFT_1619at 1681.138 kb on + strand, within B158DRAFT_1619at 1681.181 kb on + strand, within B158DRAFT_1619at 1681.181 kb on + strand, within B158DRAFT_1619at 1681.189 kb on + strand, within B158DRAFT_1619at 1681.189 kb on - strand, within B158DRAFT_1619at 1681.293 kb on + strandat 1681.293 kb on + strandat 1681.301 kb on - strandat 1681.301 kb on - strandat 1681.318 kb on + strandat 1681.326 kb on - strandat 1681.326 kb on - strandat 1681.340 kb on + strandat 1681.348 kb on - strandat 1681.348 kb on - strandat 1681.406 kb on + strandat 1681.414 kb on + strandat 1681.422 kb on - strandat 1681.470 kb on + strandat 1681.473 kb on - strandat 1681.478 kb on - strandat 1681.537 kb on - strand, within B158DRAFT_1620at 1681.541 kb on + strand, within B158DRAFT_1620at 1681.549 kb on - strand, within B158DRAFT_1620at 1681.551 kb on + strand, within B158DRAFT_1620at 1681.552 kb on + strand, within B158DRAFT_1620at 1681.602 kb on + strand, within B158DRAFT_1620at 1681.610 kb on + strand, within B158DRAFT_1620at 1681.610 kb on - strand, within B158DRAFT_1620at 1681.631 kb on - strand, within B158DRAFT_1620at 1681.659 kb on - strand, within B158DRAFT_1620at 1681.703 kb on - strand, within B158DRAFT_1620at 1681.703 kb on - strand, within B158DRAFT_1620at 1681.760 kb on + strand, within B158DRAFT_1620at 1681.762 kb on + strand, within B158DRAFT_1620at 1681.770 kb on - strand, within B158DRAFT_1620at 1681.770 kb on - strand, within B158DRAFT_1620at 1681.861 kb on - strand, within B158DRAFT_1620at 1681.930 kb on + strand, within B158DRAFT_1620at 1682.009 kb on - strand, within B158DRAFT_1620at 1682.053 kb on + strand, within B158DRAFT_1620at 1682.061 kb on - strand, within B158DRAFT_1620at 1682.087 kb on - strand, within B158DRAFT_1620at 1682.098 kb on + strand, within B158DRAFT_1620at 1682.213 kb on + strand, within B158DRAFT_1620at 1682.221 kb on - strand, within B158DRAFT_1620at 1682.254 kb on + strand, within B158DRAFT_1620at 1682.262 kb on - strand, within B158DRAFT_1620at 1682.319 kb on + strand, within B158DRAFT_1620

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.4 mg/ml
remove
1,678,808 + B158DRAFT_1618 0.34 -0.9
1,678,808 + B158DRAFT_1618 0.34 +0.0
1,678,808 + B158DRAFT_1618 0.34 -2.7
1,678,816 - B158DRAFT_1618 0.34 +0.3
1,678,816 - B158DRAFT_1618 0.34 +0.1
1,678,816 - B158DRAFT_1618 0.34 +0.1
1,678,816 - B158DRAFT_1618 0.34 +0.1
1,678,818 - B158DRAFT_1618 0.34 -0.4
1,678,818 - B158DRAFT_1618 0.34 -0.2
1,678,820 + B158DRAFT_1618 0.34 -0.0
1,678,877 + B158DRAFT_1618 0.38 -0.6
1,678,885 - B158DRAFT_1618 0.39 -2.5
1,678,885 - B158DRAFT_1618 0.39 +1.3
1,678,895 - B158DRAFT_1618 0.40 -0.2
1,679,002 + B158DRAFT_1618 0.47 +0.2
1,679,071 + B158DRAFT_1618 0.52 +0.1
1,679,079 + B158DRAFT_1618 0.53 -0.8
1,679,087 - B158DRAFT_1618 0.53 -0.5
1,679,089 + B158DRAFT_1618 0.54 -0.2
1,679,089 + B158DRAFT_1618 0.54 +0.0
1,679,089 + B158DRAFT_1618 0.54 -0.6
1,679,097 - B158DRAFT_1618 0.54 +0.3
1,679,097 - B158DRAFT_1618 0.54 +0.6
1,679,111 - B158DRAFT_1618 0.55 +0.6
1,679,214 + B158DRAFT_1618 0.62 +0.2
1,679,283 + B158DRAFT_1618 0.67 -0.1
1,679,307 - B158DRAFT_1618 0.69 -0.9
1,679,325 + B158DRAFT_1618 0.70 -0.6
1,679,325 + B158DRAFT_1618 0.70 -0.6
1,679,333 - B158DRAFT_1618 0.71 -0.3
1,679,335 + B158DRAFT_1618 0.71 +0.1
1,679,343 - B158DRAFT_1618 0.72 -2.4
1,679,367 + B158DRAFT_1618 0.73 -0.8
1,679,367 + B158DRAFT_1618 0.73 -0.8
1,679,367 + B158DRAFT_1618 0.73 +0.1
1,679,367 + B158DRAFT_1618 0.73 +0.4
1,679,375 - B158DRAFT_1618 0.74 -0.9
1,679,375 - B158DRAFT_1618 0.74 -0.1
1,679,375 - B158DRAFT_1618 0.74 +0.0
1,679,375 - B158DRAFT_1618 0.74 +0.1
1,679,375 - B158DRAFT_1618 0.74 +0.0
1,679,423 + B158DRAFT_1618 0.77 -0.3
1,679,487 - B158DRAFT_1618 0.82 +1.1
1,679,511 + B158DRAFT_1618 0.84 -0.2
1,679,516 + B158DRAFT_1618 0.84 -0.4
1,679,524 - B158DRAFT_1618 0.85 -0.0
1,679,576 + B158DRAFT_1618 0.88 +0.0
1,679,576 + B158DRAFT_1618 0.88 +0.0
1,679,630 + -0.2
1,679,695 - +0.3
1,679,695 - +0.2
1,679,695 - -0.3
1,679,827 - +0.4
1,679,856 - +0.1
1,679,872 + +0.3
1,679,880 - +0.6
1,679,935 + -0.6
1,679,943 - -0.8
1,679,977 - B158DRAFT_1619 0.12 -0.3
1,679,996 + B158DRAFT_1619 0.13 -0.2
1,680,004 - B158DRAFT_1619 0.14 +0.4
1,680,015 + B158DRAFT_1619 0.14 -0.2
1,680,015 + B158DRAFT_1619 0.14 +3.4
1,680,023 - B158DRAFT_1619 0.15 +0.2
1,680,099 + B158DRAFT_1619 0.19 +0.4
1,680,169 - B158DRAFT_1619 0.24 -0.7
1,680,192 - B158DRAFT_1619 0.25 -0.1
1,680,195 + B158DRAFT_1619 0.25 -0.0
1,680,195 + B158DRAFT_1619 0.25 +0.6
1,680,203 - B158DRAFT_1619 0.26 +0.4
1,680,231 - B158DRAFT_1619 0.28 -0.6
1,680,238 + B158DRAFT_1619 0.28 -0.2
1,680,241 - B158DRAFT_1619 0.28 -0.4
1,680,253 + B158DRAFT_1619 0.29 -0.8
1,680,253 + B158DRAFT_1619 0.29 -0.3
1,680,253 + B158DRAFT_1619 0.29 -0.6
1,680,261 - B158DRAFT_1619 0.29 -1.1
1,680,261 - B158DRAFT_1619 0.29 -0.3
1,680,261 - B158DRAFT_1619 0.29 -0.6
1,680,282 + B158DRAFT_1619 0.31 -0.0
1,680,290 - B158DRAFT_1619 0.31 -0.3
1,680,298 - B158DRAFT_1619 0.32 -0.1
1,680,329 - B158DRAFT_1619 0.34 -0.2
1,680,357 + B158DRAFT_1619 0.35 +0.7
1,680,371 + B158DRAFT_1619 0.36 -0.2
1,680,379 - B158DRAFT_1619 0.37 -0.3
1,680,380 + B158DRAFT_1619 0.37 -0.6
1,680,387 - B158DRAFT_1619 0.37 -1.0
1,680,387 - B158DRAFT_1619 0.37 +0.2
1,680,388 - B158DRAFT_1619 0.37 +0.5
1,680,389 + B158DRAFT_1619 0.37 +1.0
1,680,512 + B158DRAFT_1619 0.45 +0.3
1,680,527 + B158DRAFT_1619 0.46 +0.0
1,680,540 + B158DRAFT_1619 0.47 -0.4
1,680,548 - B158DRAFT_1619 0.47 -1.5
1,680,548 - B158DRAFT_1619 0.47 -0.1
1,680,548 - B158DRAFT_1619 0.47 +0.1
1,680,552 + B158DRAFT_1619 0.48 +0.1
1,680,560 - B158DRAFT_1619 0.48 -0.7
1,680,560 - B158DRAFT_1619 0.48 +0.5
1,680,588 + B158DRAFT_1619 0.50 -0.0
1,680,594 + B158DRAFT_1619 0.50 -0.8
1,680,609 - B158DRAFT_1619 0.51 +0.1
1,680,668 + B158DRAFT_1619 0.55 +0.9
1,680,799 + B158DRAFT_1619 0.63 -0.0
1,680,807 - B158DRAFT_1619 0.63 -0.1
1,680,876 + B158DRAFT_1619 0.68 -0.2
1,680,884 - B158DRAFT_1619 0.68 -0.9
1,680,889 - B158DRAFT_1619 0.68 -1.7
1,680,928 + B158DRAFT_1619 0.71 -0.3
1,680,936 - B158DRAFT_1619 0.71 -0.1
1,680,980 + B158DRAFT_1619 0.74 +0.1
1,680,992 + B158DRAFT_1619 0.75 -0.2
1,680,992 + B158DRAFT_1619 0.75 +0.2
1,680,992 + B158DRAFT_1619 0.75 -0.5
1,681,000 + B158DRAFT_1619 0.75 -0.4
1,681,012 + B158DRAFT_1619 0.76 -0.5
1,681,012 + B158DRAFT_1619 0.76 -0.2
1,681,012 + B158DRAFT_1619 0.76 +0.2
1,681,020 - B158DRAFT_1619 0.77 +0.7
1,681,119 - B158DRAFT_1619 0.83 +0.3
1,681,138 + B158DRAFT_1619 0.84 +0.1
1,681,181 + B158DRAFT_1619 0.86 +0.1
1,681,181 + B158DRAFT_1619 0.86 +0.1
1,681,189 + B158DRAFT_1619 0.87 +1.1
1,681,189 - B158DRAFT_1619 0.87 +0.3
1,681,293 + +1.2
1,681,293 + +1.2
1,681,301 - -1.4
1,681,301 - -0.7
1,681,318 + +0.6
1,681,326 - +1.3
1,681,326 - +0.6
1,681,340 + -0.0
1,681,348 - +0.2
1,681,348 - +1.3
1,681,406 + -0.8
1,681,414 + -0.7
1,681,422 - -0.5
1,681,470 + +0.0
1,681,473 - -0.0
1,681,478 - +0.1
1,681,537 - B158DRAFT_1620 0.12 -0.2
1,681,541 + B158DRAFT_1620 0.12 -0.1
1,681,549 - B158DRAFT_1620 0.13 -0.3
1,681,551 + B158DRAFT_1620 0.13 -0.2
1,681,552 + B158DRAFT_1620 0.13 +1.0
1,681,602 + B158DRAFT_1620 0.18 -0.1
1,681,610 + B158DRAFT_1620 0.18 -0.2
1,681,610 - B158DRAFT_1620 0.18 +0.2
1,681,631 - B158DRAFT_1620 0.20 -2.1
1,681,659 - B158DRAFT_1620 0.23 -0.5
1,681,703 - B158DRAFT_1620 0.27 -0.2
1,681,703 - B158DRAFT_1620 0.27 -1.2
1,681,760 + B158DRAFT_1620 0.32 -0.1
1,681,762 + B158DRAFT_1620 0.32 +0.4
1,681,770 - B158DRAFT_1620 0.33 -0.3
1,681,770 - B158DRAFT_1620 0.33 -0.2
1,681,861 - B158DRAFT_1620 0.41 +1.4
1,681,930 + B158DRAFT_1620 0.47 +0.5
1,682,009 - B158DRAFT_1620 0.54 -0.3
1,682,053 + B158DRAFT_1620 0.58 -1.9
1,682,061 - B158DRAFT_1620 0.59 -0.1
1,682,087 - B158DRAFT_1620 0.62 -0.4
1,682,098 + B158DRAFT_1620 0.62 +0.3
1,682,213 + B158DRAFT_1620 0.73 -0.0
1,682,221 - B158DRAFT_1620 0.74 +0.2
1,682,254 + B158DRAFT_1620 0.77 -1.1
1,682,262 - B158DRAFT_1620 0.77 -0.7
1,682,319 + B158DRAFT_1620 0.83 +1.0

Or see this region's nucleotide sequence