Experiment: m.b. Tetracycline 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1344 and B158DRAFT_1345 are separated by 390 nucleotides B158DRAFT_1345 and B158DRAFT_1346 are separated by 60 nucleotides
B158DRAFT_1344: B158DRAFT_1344 - 2-methylcitrate synthase (EC 2.3.3.5), at 1,387,005 to 1,388,144
_1344
B158DRAFT_1345: B158DRAFT_1345 - aconitate hydratase 1/2-methylisocitrate dehydratase, Fe/S-dependent, at 1,388,535 to 1,391,123
_1345
B158DRAFT_1346: B158DRAFT_1346 - 2-methylaconitate cis-trans isomerase, at 1,391,184 to 1,392,398
_1346
Position (kb)
1388
1389
1390
1391
1392 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1387.545 kb on + strand, within B158DRAFT_1344 at 1387.553 kb on - strand, within B158DRAFT_1344 at 1387.553 kb on - strand, within B158DRAFT_1344 at 1387.570 kb on - strand, within B158DRAFT_1344 at 1387.572 kb on + strand, within B158DRAFT_1344 at 1387.580 kb on - strand, within B158DRAFT_1344 at 1387.588 kb on - strand, within B158DRAFT_1344 at 1387.588 kb on - strand, within B158DRAFT_1344 at 1387.593 kb on + strand, within B158DRAFT_1344 at 1387.629 kb on + strand, within B158DRAFT_1344 at 1387.629 kb on + strand, within B158DRAFT_1344 at 1387.631 kb on - strand, within B158DRAFT_1344 at 1387.632 kb on - strand, within B158DRAFT_1344 at 1387.637 kb on - strand, within B158DRAFT_1344 at 1387.637 kb on - strand, within B158DRAFT_1344 at 1387.637 kb on - strand, within B158DRAFT_1344 at 1387.672 kb on + strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.687 kb on - strand, within B158DRAFT_1344 at 1387.719 kb on + strand, within B158DRAFT_1344 at 1387.719 kb on + strand, within B158DRAFT_1344 at 1387.727 kb on - strand, within B158DRAFT_1344 at 1387.727 kb on - strand, within B158DRAFT_1344 at 1387.729 kb on + strand, within B158DRAFT_1344 at 1387.737 kb on - strand, within B158DRAFT_1344 at 1387.737 kb on - strand, within B158DRAFT_1344 at 1387.737 kb on - strand, within B158DRAFT_1344 at 1387.737 kb on - strand, within B158DRAFT_1344 at 1387.803 kb on + strand, within B158DRAFT_1344 at 1387.810 kb on - strand, within B158DRAFT_1344 at 1387.891 kb on + strand, within B158DRAFT_1344 at 1388.058 kb on - strand at 1388.422 kb on + strand at 1389.025 kb on - strand, within B158DRAFT_1345 at 1389.279 kb on + strand, within B158DRAFT_1345 at 1389.454 kb on - strand, within B158DRAFT_1345 at 1390.453 kb on - strand, within B158DRAFT_1345 at 1390.568 kb on + strand, within B158DRAFT_1345 at 1390.568 kb on + strand, within B158DRAFT_1345 at 1390.576 kb on - strand, within B158DRAFT_1345 at 1390.764 kb on + strand, within B158DRAFT_1345 at 1390.764 kb on + strand, within B158DRAFT_1345 at 1391.210 kb on - strand at 1391.217 kb on + strand at 1391.222 kb on + strand at 1391.306 kb on + strand, within B158DRAFT_1346 at 1391.353 kb on + strand, within B158DRAFT_1346 at 1391.361 kb on - strand, within B158DRAFT_1346 at 1391.777 kb on + strand, within B158DRAFT_1346 at 1391.890 kb on + strand, within B158DRAFT_1346 at 1392.112 kb on + strand, within B158DRAFT_1346
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.4 mg/ml remove 1,387,545 + B158DRAFT_1344 0.47 +0.2 1,387,553 - B158DRAFT_1344 0.48 +0.0 1,387,553 - B158DRAFT_1344 0.48 +0.3 1,387,570 - B158DRAFT_1344 0.50 -1.3 1,387,572 + B158DRAFT_1344 0.50 -0.8 1,387,580 - B158DRAFT_1344 0.50 -0.5 1,387,588 - B158DRAFT_1344 0.51 -0.0 1,387,588 - B158DRAFT_1344 0.51 +0.1 1,387,593 + B158DRAFT_1344 0.52 +0.3 1,387,629 + B158DRAFT_1344 0.55 -1.4 1,387,629 + B158DRAFT_1344 0.55 -1.2 1,387,631 - B158DRAFT_1344 0.55 -2.5 1,387,632 - B158DRAFT_1344 0.55 -0.9 1,387,637 - B158DRAFT_1344 0.55 -0.3 1,387,637 - B158DRAFT_1344 0.55 +0.3 1,387,637 - B158DRAFT_1344 0.55 -1.2 1,387,672 + B158DRAFT_1344 0.59 -0.2 1,387,680 - B158DRAFT_1344 0.59 -0.9 1,387,680 - B158DRAFT_1344 0.59 -0.9 1,387,680 - B158DRAFT_1344 0.59 -1.6 1,387,680 - B158DRAFT_1344 0.59 -0.1 1,387,680 - B158DRAFT_1344 0.59 +0.5 1,387,680 - B158DRAFT_1344 0.59 -1.4 1,387,687 - B158DRAFT_1344 0.60 -1.1 1,387,719 + B158DRAFT_1344 0.63 -0.3 1,387,719 + B158DRAFT_1344 0.63 +0.2 1,387,727 - B158DRAFT_1344 0.63 -0.1 1,387,727 - B158DRAFT_1344 0.63 -0.7 1,387,729 + B158DRAFT_1344 0.64 +0.3 1,387,737 - B158DRAFT_1344 0.64 -0.5 1,387,737 - B158DRAFT_1344 0.64 -1.2 1,387,737 - B158DRAFT_1344 0.64 -0.4 1,387,737 - B158DRAFT_1344 0.64 +0.6 1,387,803 + B158DRAFT_1344 0.70 +0.0 1,387,810 - B158DRAFT_1344 0.71 -0.5 1,387,891 + B158DRAFT_1344 0.78 +0.6 1,388,058 - +0.2 1,388,422 + -0.5 1,389,025 - B158DRAFT_1345 0.19 +3.7 1,389,279 + B158DRAFT_1345 0.29 +0.7 1,389,454 - B158DRAFT_1345 0.35 +2.6 1,390,453 - B158DRAFT_1345 0.74 +3.3 1,390,568 + B158DRAFT_1345 0.79 +2.6 1,390,568 + B158DRAFT_1345 0.79 +3.7 1,390,576 - B158DRAFT_1345 0.79 +2.0 1,390,764 + B158DRAFT_1345 0.86 +2.6 1,390,764 + B158DRAFT_1345 0.86 +3.0 1,391,210 - +3.1 1,391,217 + +2.6 1,391,222 + +1.0 1,391,306 + B158DRAFT_1346 0.10 +2.3 1,391,353 + B158DRAFT_1346 0.14 +1.7 1,391,361 - B158DRAFT_1346 0.15 +1.9 1,391,777 + B158DRAFT_1346 0.49 +3.5 1,391,890 + B158DRAFT_1346 0.58 +3.2 1,392,112 + B158DRAFT_1346 0.76 +1.3
Or see this region's nucleotide sequence