Experiment: m.b. Tetracycline 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1325 and B158DRAFT_1326 are separated by 3 nucleotides B158DRAFT_1326 and B158DRAFT_1327 are separated by 6 nucleotides B158DRAFT_1327 and B158DRAFT_1328 are separated by 11 nucleotides B158DRAFT_1328 and B158DRAFT_1329 overlap by 11 nucleotides B158DRAFT_1329 and B158DRAFT_1330 overlap by 4 nucleotides B158DRAFT_1330 and B158DRAFT_1331 are separated by 3 nucleotides
B158DRAFT_1325: B158DRAFT_1325 - heme exporter protein CcmC, at 1,368,295 to 1,369,068
_1325
B158DRAFT_1326: B158DRAFT_1326 - heme exporter protein CcmD, at 1,369,072 to 1,369,296
_1326
B158DRAFT_1327: B158DRAFT_1327 - Cytochrome c-type biogenesis protein CcmE, at 1,369,303 to 1,369,782
_1327
B158DRAFT_1328: B158DRAFT_1328 - c-type cytochrome biogenesis protein CcmF, at 1,369,794 to 1,371,782
_1328
B158DRAFT_1329: B158DRAFT_1329 - periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily, at 1,371,772 to 1,372,338
_1329
B158DRAFT_1330: B158DRAFT_1330 - Uncharacterized protein involved in biosynthesis of c-type cytochromes, at 1,372,335 to 1,372,769
_1330
B158DRAFT_1331: B158DRAFT_1331 - Cytochrome c biogenesis factor, at 1,372,773 to 1,373,798
_1331
Position (kb) 1369
1370
1371
1372 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1368.798 kb on - strand, within B158DRAFT_1325 at 1368.798 kb on - strand, within B158DRAFT_1325 at 1369.015 kb on + strand at 1369.056 kb on + strand at 1369.248 kb on + strand, within B158DRAFT_1326 at 1369.248 kb on + strand, within B158DRAFT_1326 at 1369.251 kb on - strand, within B158DRAFT_1326 at 1369.359 kb on + strand, within B158DRAFT_1327 at 1369.367 kb on - strand, within B158DRAFT_1327 at 1369.373 kb on + strand, within B158DRAFT_1327 at 1369.410 kb on + strand, within B158DRAFT_1327 at 1369.410 kb on + strand, within B158DRAFT_1327 at 1369.447 kb on + strand, within B158DRAFT_1327 at 1369.490 kb on + strand, within B158DRAFT_1327 at 1369.552 kb on - strand, within B158DRAFT_1327 at 1370.206 kb on + strand, within B158DRAFT_1328 at 1370.206 kb on + strand, within B158DRAFT_1328 at 1370.221 kb on + strand, within B158DRAFT_1328 at 1370.221 kb on + strand, within B158DRAFT_1328 at 1370.229 kb on - strand, within B158DRAFT_1328 at 1370.293 kb on + strand, within B158DRAFT_1328 at 1370.393 kb on + strand, within B158DRAFT_1328 at 1370.463 kb on + strand, within B158DRAFT_1328 at 1370.546 kb on + strand, within B158DRAFT_1328 at 1370.551 kb on + strand, within B158DRAFT_1328 at 1370.622 kb on + strand, within B158DRAFT_1328 at 1370.657 kb on + strand, within B158DRAFT_1328 at 1370.658 kb on + strand, within B158DRAFT_1328 at 1370.785 kb on - strand, within B158DRAFT_1328 at 1370.787 kb on + strand, within B158DRAFT_1328 at 1370.874 kb on + strand, within B158DRAFT_1328 at 1370.942 kb on + strand, within B158DRAFT_1328 at 1371.013 kb on + strand, within B158DRAFT_1328 at 1371.251 kb on - strand, within B158DRAFT_1328 at 1371.501 kb on + strand, within B158DRAFT_1328 at 1371.510 kb on + strand, within B158DRAFT_1328 at 1371.511 kb on - strand, within B158DRAFT_1328 at 1371.587 kb on + strand at 1371.661 kb on + strand at 1371.797 kb on + strand at 1371.805 kb on - strand at 1371.828 kb on + strand at 1371.924 kb on + strand, within B158DRAFT_1329 at 1371.931 kb on + strand, within B158DRAFT_1329 at 1371.949 kb on + strand, within B158DRAFT_1329 at 1371.957 kb on - strand, within B158DRAFT_1329 at 1371.957 kb on - strand, within B158DRAFT_1329 at 1372.163 kb on - strand, within B158DRAFT_1329 at 1372.191 kb on - strand, within B158DRAFT_1329 at 1372.350 kb on + strand at 1372.603 kb on + strand, within B158DRAFT_1330 at 1372.611 kb on - strand, within B158DRAFT_1330 at 1372.723 kb on + strand, within B158DRAFT_1330 at 1372.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.4 mg/ml remove 1,368,798 - B158DRAFT_1325 0.65 -0.5 1,368,798 - B158DRAFT_1325 0.65 -1.3 1,369,015 + +1.1 1,369,056 + +0.3 1,369,248 + B158DRAFT_1326 0.78 -0.7 1,369,248 + B158DRAFT_1326 0.78 +0.1 1,369,251 - B158DRAFT_1326 0.80 -0.1 1,369,359 + B158DRAFT_1327 0.12 -0.5 1,369,367 - B158DRAFT_1327 0.13 +0.3 1,369,373 + B158DRAFT_1327 0.15 +0.3 1,369,410 + B158DRAFT_1327 0.22 -0.0 1,369,410 + B158DRAFT_1327 0.22 +1.9 1,369,447 + B158DRAFT_1327 0.30 -0.7 1,369,490 + B158DRAFT_1327 0.39 +0.9 1,369,552 - B158DRAFT_1327 0.52 +1.0 1,370,206 + B158DRAFT_1328 0.21 +2.1 1,370,206 + B158DRAFT_1328 0.21 -0.7 1,370,221 + B158DRAFT_1328 0.21 -0.6 1,370,221 + B158DRAFT_1328 0.21 -0.7 1,370,229 - B158DRAFT_1328 0.22 +0.3 1,370,293 + B158DRAFT_1328 0.25 +1.6 1,370,393 + B158DRAFT_1328 0.30 +1.9 1,370,463 + B158DRAFT_1328 0.34 +0.7 1,370,546 + B158DRAFT_1328 0.38 +0.3 1,370,551 + B158DRAFT_1328 0.38 -0.1 1,370,622 + B158DRAFT_1328 0.42 -0.7 1,370,657 + B158DRAFT_1328 0.43 +0.5 1,370,658 + B158DRAFT_1328 0.43 -1.5 1,370,785 - B158DRAFT_1328 0.50 -0.9 1,370,787 + B158DRAFT_1328 0.50 +0.7 1,370,874 + B158DRAFT_1328 0.54 +1.9 1,370,942 + B158DRAFT_1328 0.58 -1.1 1,371,013 + B158DRAFT_1328 0.61 +1.3 1,371,251 - B158DRAFT_1328 0.73 +1.1 1,371,501 + B158DRAFT_1328 0.86 -0.5 1,371,510 + B158DRAFT_1328 0.86 -0.1 1,371,511 - B158DRAFT_1328 0.86 +0.3 1,371,587 + +2.3 1,371,661 + -0.3 1,371,797 + +0.4 1,371,805 - -2.7 1,371,828 + +0.3 1,371,924 + B158DRAFT_1329 0.27 +0.9 1,371,931 + B158DRAFT_1329 0.28 +1.9 1,371,949 + B158DRAFT_1329 0.31 +2.5 1,371,957 - B158DRAFT_1329 0.33 -0.1 1,371,957 - B158DRAFT_1329 0.33 -1.1 1,372,163 - B158DRAFT_1329 0.69 +0.3 1,372,191 - B158DRAFT_1329 0.74 -1.1 1,372,350 + +0.1 1,372,603 + B158DRAFT_1330 0.62 -0.5 1,372,611 - B158DRAFT_1330 0.63 +0.3 1,372,723 + B158DRAFT_1330 0.89 -0.2 1,372,767 - +1.9
Or see this region's nucleotide sequence