Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1235

Experiment: m.b. Tetracycline 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1234 and B158DRAFT_1235 are separated by 137 nucleotidesB158DRAFT_1235 and B158DRAFT_1236 are separated by 316 nucleotides B158DRAFT_1234: B158DRAFT_1234 - Transcriptional regulator, at 1,271,916 to 1,272,875 _1234 B158DRAFT_1235: B158DRAFT_1235 - Peroxiredoxin, at 1,273,013 to 1,273,618 _1235 B158DRAFT_1236: B158DRAFT_1236 - hypothetical protein, at 1,273,935 to 1,275,020 _1236 Position (kb) 1273 1274Strain fitness (log2 ratio) -2 -1 0 1 2at 1272.054 kb on - strand, within B158DRAFT_1234at 1272.074 kb on + strand, within B158DRAFT_1234at 1272.074 kb on + strand, within B158DRAFT_1234at 1272.074 kb on + strand, within B158DRAFT_1234at 1272.082 kb on - strand, within B158DRAFT_1234at 1272.134 kb on + strand, within B158DRAFT_1234at 1272.134 kb on - strand, within B158DRAFT_1234at 1272.210 kb on + strand, within B158DRAFT_1234at 1272.210 kb on + strand, within B158DRAFT_1234at 1272.218 kb on - strand, within B158DRAFT_1234at 1272.282 kb on - strand, within B158DRAFT_1234at 1272.331 kb on + strand, within B158DRAFT_1234at 1272.397 kb on + strand, within B158DRAFT_1234at 1272.405 kb on - strand, within B158DRAFT_1234at 1272.405 kb on - strand, within B158DRAFT_1234at 1272.405 kb on - strand, within B158DRAFT_1234at 1272.433 kb on + strand, within B158DRAFT_1234at 1272.434 kb on - strand, within B158DRAFT_1234at 1272.441 kb on - strand, within B158DRAFT_1234at 1272.487 kb on + strand, within B158DRAFT_1234at 1272.510 kb on + strand, within B158DRAFT_1234at 1272.510 kb on + strand, within B158DRAFT_1234at 1272.618 kb on - strand, within B158DRAFT_1234at 1272.645 kb on + strand, within B158DRAFT_1234at 1272.653 kb on - strand, within B158DRAFT_1234at 1272.695 kb on - strand, within B158DRAFT_1234at 1272.785 kb on + strandat 1272.874 kb on + strandat 1272.876 kb on - strandat 1272.881 kb on + strandat 1273.061 kb on + strandat 1273.061 kb on + strandat 1273.061 kb on + strandat 1273.061 kb on + strandat 1273.069 kb on - strandat 1273.069 kb on - strandat 1273.069 kb on - strandat 1273.069 kb on - strandat 1273.088 kb on + strand, within B158DRAFT_1235at 1273.142 kb on + strand, within B158DRAFT_1235at 1273.142 kb on + strand, within B158DRAFT_1235at 1273.142 kb on + strand, within B158DRAFT_1235at 1273.150 kb on - strand, within B158DRAFT_1235at 1273.150 kb on - strand, within B158DRAFT_1235at 1273.202 kb on - strand, within B158DRAFT_1235at 1273.218 kb on + strand, within B158DRAFT_1235at 1273.218 kb on + strand, within B158DRAFT_1235at 1273.218 kb on + strand, within B158DRAFT_1235at 1273.221 kb on - strand, within B158DRAFT_1235at 1273.226 kb on - strandat 1273.270 kb on + strand, within B158DRAFT_1235at 1273.270 kb on + strand, within B158DRAFT_1235at 1273.270 kb on + strand, within B158DRAFT_1235at 1273.270 kb on + strand, within B158DRAFT_1235at 1273.270 kb on + strand, within B158DRAFT_1235at 1273.270 kb on + strand, within B158DRAFT_1235at 1273.278 kb on - strand, within B158DRAFT_1235at 1273.278 kb on - strand, within B158DRAFT_1235at 1273.278 kb on - strand, within B158DRAFT_1235at 1273.308 kb on - strand, within B158DRAFT_1235at 1273.310 kb on + strand, within B158DRAFT_1235at 1273.446 kb on - strand, within B158DRAFT_1235at 1273.496 kb on + strand, within B158DRAFT_1235at 1273.496 kb on + strand, within B158DRAFT_1235at 1273.496 kb on + strand, within B158DRAFT_1235at 1273.496 kb on + strand, within B158DRAFT_1235at 1273.588 kb on + strandat 1273.588 kb on + strandat 1273.588 kb on + strandat 1273.596 kb on - strandat 1273.596 kb on - strandat 1273.596 kb on - strandat 1273.596 kb on - strandat 1273.668 kb on + strandat 1273.717 kb on + strandat 1273.834 kb on - strandat 1273.834 kb on - strandat 1273.916 kb on - strandat 1273.916 kb on - strandat 1274.083 kb on + strand, within B158DRAFT_1236at 1274.244 kb on + strand, within B158DRAFT_1236at 1274.420 kb on + strand, within B158DRAFT_1236at 1274.433 kb on - strand, within B158DRAFT_1236at 1274.594 kb on + strand, within B158DRAFT_1236at 1274.602 kb on - strand, within B158DRAFT_1236

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.4 mg/ml
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1,272,054 - B158DRAFT_1234 0.14 -0.3
1,272,074 + B158DRAFT_1234 0.16 +1.5
1,272,074 + B158DRAFT_1234 0.16 -0.3
1,272,074 + B158DRAFT_1234 0.16 -0.4
1,272,082 - B158DRAFT_1234 0.17 +1.2
1,272,134 + B158DRAFT_1234 0.23 +0.3
1,272,134 - B158DRAFT_1234 0.23 +0.7
1,272,210 + B158DRAFT_1234 0.31 -0.5
1,272,210 + B158DRAFT_1234 0.31 -0.7
1,272,218 - B158DRAFT_1234 0.31 +0.4
1,272,282 - B158DRAFT_1234 0.38 +0.1
1,272,331 + B158DRAFT_1234 0.43 -0.2
1,272,397 + B158DRAFT_1234 0.50 +0.2
1,272,405 - B158DRAFT_1234 0.51 -0.3
1,272,405 - B158DRAFT_1234 0.51 +0.3
1,272,405 - B158DRAFT_1234 0.51 -0.1
1,272,433 + B158DRAFT_1234 0.54 -0.3
1,272,434 - B158DRAFT_1234 0.54 -0.4
1,272,441 - B158DRAFT_1234 0.55 -1.7
1,272,487 + B158DRAFT_1234 0.59 -0.4
1,272,510 + B158DRAFT_1234 0.62 +0.0
1,272,510 + B158DRAFT_1234 0.62 -0.9
1,272,618 - B158DRAFT_1234 0.73 -0.0
1,272,645 + B158DRAFT_1234 0.76 +1.3
1,272,653 - B158DRAFT_1234 0.77 -0.5
1,272,695 - B158DRAFT_1234 0.81 -1.6
1,272,785 + +1.0
1,272,874 + +0.3
1,272,876 - -0.7
1,272,881 + -0.8
1,273,061 + +1.1
1,273,061 + -0.3
1,273,061 + +0.9
1,273,061 + -0.0
1,273,069 - -0.3
1,273,069 - -0.1
1,273,069 - -0.9
1,273,069 - -0.7
1,273,088 + B158DRAFT_1235 0.12 -1.7
1,273,142 + B158DRAFT_1235 0.21 +0.5
1,273,142 + B158DRAFT_1235 0.21 -0.2
1,273,142 + B158DRAFT_1235 0.21 +0.1
1,273,150 - B158DRAFT_1235 0.23 -0.2
1,273,150 - B158DRAFT_1235 0.23 -0.3
1,273,202 - B158DRAFT_1235 0.31 -0.2
1,273,218 + B158DRAFT_1235 0.34 -0.7
1,273,218 + B158DRAFT_1235 0.34 -0.6
1,273,218 + B158DRAFT_1235 0.34 +0.3
1,273,221 - B158DRAFT_1235 0.34 -0.3
1,273,226 - +1.9
1,273,270 + B158DRAFT_1235 0.42 -0.0
1,273,270 + B158DRAFT_1235 0.42 +0.3
1,273,270 + B158DRAFT_1235 0.42 -0.9
1,273,270 + B158DRAFT_1235 0.42 +0.1
1,273,270 + B158DRAFT_1235 0.42 +0.4
1,273,270 + B158DRAFT_1235 0.42 -0.6
1,273,278 - B158DRAFT_1235 0.44 -0.5
1,273,278 - B158DRAFT_1235 0.44 -0.3
1,273,278 - B158DRAFT_1235 0.44 -2.2
1,273,308 - B158DRAFT_1235 0.49 -0.7
1,273,310 + B158DRAFT_1235 0.49 -0.3
1,273,446 - B158DRAFT_1235 0.71 -0.9
1,273,496 + B158DRAFT_1235 0.80 +0.4
1,273,496 + B158DRAFT_1235 0.80 -0.8
1,273,496 + B158DRAFT_1235 0.80 +0.2
1,273,496 + B158DRAFT_1235 0.80 -0.9
1,273,588 + -1.0
1,273,588 + -0.5
1,273,588 + -0.1
1,273,596 - +0.2
1,273,596 - -0.7
1,273,596 - +0.8
1,273,596 - +0.3
1,273,668 + +0.7
1,273,717 + -0.9
1,273,834 - -0.4
1,273,834 - -0.4
1,273,916 - -0.7
1,273,916 - -0.1
1,274,083 + B158DRAFT_1236 0.14 -0.2
1,274,244 + B158DRAFT_1236 0.28 +0.6
1,274,420 + B158DRAFT_1236 0.45 +0.2
1,274,433 - B158DRAFT_1236 0.46 -0.5
1,274,594 + B158DRAFT_1236 0.61 +0.5
1,274,602 - B158DRAFT_1236 0.61 -0.3

Or see this region's nucleotide sequence