Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1046

Experiment: m.b. Tetracycline 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1044 and B158DRAFT_1045 are separated by 4 nucleotidesB158DRAFT_1045 and B158DRAFT_1046 overlap by 4 nucleotidesB158DRAFT_1046 and B158DRAFT_1047 overlap by 1 nucleotides B158DRAFT_1044: B158DRAFT_1044 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 1,082,933 to 1,083,913 _1044 B158DRAFT_1045: B158DRAFT_1045 - ABC-type antimicrobial peptide transport system, permease component, at 1,083,918 to 1,084,781 _1045 B158DRAFT_1046: B158DRAFT_1046 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 1,084,778 to 1,085,737 _1046 B158DRAFT_1047: B158DRAFT_1047 - ABC-type dipeptide transport system, periplasmic component, at 1,085,737 to 1,087,395 _1047 Position (kb) 1084 1085 1086Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1083.781 kb on - strand, within B158DRAFT_1044at 1083.849 kb on + strandat 1083.849 kb on + strandat 1083.849 kb on + strandat 1083.849 kb on + strandat 1083.849 kb on + strandat 1083.849 kb on + strandat 1083.849 kb on + strandat 1083.849 kb on + strandat 1083.857 kb on - strandat 1083.857 kb on - strandat 1083.857 kb on - strandat 1083.857 kb on - strandat 1083.857 kb on - strandat 1083.857 kb on - strandat 1083.862 kb on - strandat 1083.862 kb on - strandat 1083.862 kb on - strandat 1083.878 kb on - strandat 1083.917 kb on - strandat 1083.932 kb on - strandat 1083.935 kb on + strandat 1083.935 kb on + strandat 1083.935 kb on + strandat 1083.935 kb on + strandat 1083.935 kb on + strandat 1083.935 kb on + strandat 1083.935 kb on + strandat 1083.935 kb on + strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.943 kb on - strandat 1083.958 kb on + strandat 1084.012 kb on + strand, within B158DRAFT_1045at 1084.020 kb on - strand, within B158DRAFT_1045at 1084.042 kb on - strand, within B158DRAFT_1045at 1084.093 kb on - strand, within B158DRAFT_1045at 1084.130 kb on - strand, within B158DRAFT_1045at 1084.130 kb on - strand, within B158DRAFT_1045at 1084.180 kb on - strand, within B158DRAFT_1045at 1084.217 kb on - strand, within B158DRAFT_1045at 1084.242 kb on + strand, within B158DRAFT_1045at 1084.330 kb on + strand, within B158DRAFT_1045at 1084.330 kb on + strand, within B158DRAFT_1045at 1084.330 kb on + strand, within B158DRAFT_1045at 1084.330 kb on + strand, within B158DRAFT_1045at 1084.335 kb on + strand, within B158DRAFT_1045at 1084.335 kb on + strand, within B158DRAFT_1045at 1084.335 kb on + strand, within B158DRAFT_1045at 1084.335 kb on + strand, within B158DRAFT_1045at 1084.335 kb on + strand, within B158DRAFT_1045at 1084.340 kb on + strand, within B158DRAFT_1045at 1084.343 kb on - strand, within B158DRAFT_1045at 1084.343 kb on - strand, within B158DRAFT_1045at 1084.343 kb on - strand, within B158DRAFT_1045at 1084.348 kb on - strand, within B158DRAFT_1045at 1084.348 kb on - strand, within B158DRAFT_1045at 1084.421 kb on + strand, within B158DRAFT_1045at 1084.428 kb on + strand, within B158DRAFT_1045at 1084.428 kb on + strand, within B158DRAFT_1045at 1084.555 kb on + strand, within B158DRAFT_1045at 1084.555 kb on + strand, within B158DRAFT_1045at 1084.651 kb on + strand, within B158DRAFT_1045at 1084.765 kb on + strandat 1084.765 kb on + strandat 1084.765 kb on + strandat 1084.765 kb on + strandat 1084.773 kb on - strandat 1084.773 kb on - strandat 1084.773 kb on - strandat 1084.773 kb on - strandat 1084.773 kb on - strandat 1084.773 kb on - strandat 1084.773 kb on - strandat 1084.773 kb on - strandat 1084.773 kb on - strandat 1084.938 kb on - strand, within B158DRAFT_1046at 1084.964 kb on - strand, within B158DRAFT_1046at 1084.966 kb on + strand, within B158DRAFT_1046at 1084.966 kb on + strand, within B158DRAFT_1046at 1084.974 kb on - strand, within B158DRAFT_1046at 1084.980 kb on + strand, within B158DRAFT_1046at 1084.988 kb on - strand, within B158DRAFT_1046at 1085.035 kb on + strand, within B158DRAFT_1046at 1085.082 kb on + strand, within B158DRAFT_1046at 1085.090 kb on - strand, within B158DRAFT_1046at 1085.097 kb on + strand, within B158DRAFT_1046at 1085.098 kb on - strand, within B158DRAFT_1046at 1085.105 kb on - strand, within B158DRAFT_1046at 1085.109 kb on + strand, within B158DRAFT_1046at 1085.179 kb on + strand, within B158DRAFT_1046at 1085.179 kb on + strand, within B158DRAFT_1046at 1085.187 kb on - strand, within B158DRAFT_1046at 1085.192 kb on - strand, within B158DRAFT_1046at 1085.380 kb on - strand, within B158DRAFT_1046at 1085.386 kb on + strand, within B158DRAFT_1046at 1085.394 kb on - strand, within B158DRAFT_1046at 1085.401 kb on + strand, within B158DRAFT_1046at 1085.474 kb on + strand, within B158DRAFT_1046at 1085.494 kb on + strand, within B158DRAFT_1046at 1085.502 kb on - strand, within B158DRAFT_1046at 1085.502 kb on - strand, within B158DRAFT_1046at 1085.502 kb on - strand, within B158DRAFT_1046at 1085.502 kb on - strand, within B158DRAFT_1046at 1085.502 kb on - strand, within B158DRAFT_1046at 1085.502 kb on - strand, within B158DRAFT_1046at 1085.502 kb on - strand, within B158DRAFT_1046at 1085.513 kb on - strand, within B158DRAFT_1046at 1085.525 kb on + strand, within B158DRAFT_1046at 1085.538 kb on + strand, within B158DRAFT_1046at 1085.538 kb on + strand, within B158DRAFT_1046at 1085.543 kb on + strand, within B158DRAFT_1046at 1085.543 kb on + strand, within B158DRAFT_1046at 1085.551 kb on - strand, within B158DRAFT_1046at 1085.572 kb on - strand, within B158DRAFT_1046at 1085.600 kb on + strand, within B158DRAFT_1046at 1085.623 kb on - strand, within B158DRAFT_1046at 1085.662 kb on + strandat 1085.670 kb on - strandat 1085.670 kb on - strandat 1085.670 kb on - strandat 1085.714 kb on - strandat 1085.751 kb on + strandat 1085.762 kb on + strandat 1085.770 kb on - strandat 1085.865 kb on + strandat 1086.004 kb on + strand, within B158DRAFT_1047at 1086.024 kb on + strand, within B158DRAFT_1047at 1086.037 kb on - strand, within B158DRAFT_1047at 1086.037 kb on - strand, within B158DRAFT_1047at 1086.049 kb on - strand, within B158DRAFT_1047at 1086.049 kb on - strand, within B158DRAFT_1047at 1086.100 kb on + strand, within B158DRAFT_1047at 1086.100 kb on + strand, within B158DRAFT_1047at 1086.106 kb on + strand, within B158DRAFT_1047at 1086.107 kb on - strand, within B158DRAFT_1047at 1086.204 kb on + strand, within B158DRAFT_1047at 1086.253 kb on - strand, within B158DRAFT_1047at 1086.292 kb on + strand, within B158DRAFT_1047at 1086.311 kb on + strand, within B158DRAFT_1047at 1086.319 kb on - strand, within B158DRAFT_1047at 1086.394 kb on + strand, within B158DRAFT_1047at 1086.402 kb on - strand, within B158DRAFT_1047at 1086.437 kb on + strand, within B158DRAFT_1047at 1086.445 kb on - strand, within B158DRAFT_1047at 1086.538 kb on + strand, within B158DRAFT_1047at 1086.546 kb on - strand, within B158DRAFT_1047at 1086.574 kb on - strand, within B158DRAFT_1047at 1086.597 kb on - strand, within B158DRAFT_1047at 1086.607 kb on - strand, within B158DRAFT_1047at 1086.624 kb on - strand, within B158DRAFT_1047at 1086.624 kb on - strand, within B158DRAFT_1047at 1086.734 kb on - strand, within B158DRAFT_1047

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.4 mg/ml
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1,083,781 - B158DRAFT_1044 0.86 +0.2
1,083,849 + +1.3
1,083,849 + +1.5
1,083,849 + -0.8
1,083,849 + +0.8
1,083,849 + +0.6
1,083,849 + +1.0
1,083,849 + +0.4
1,083,849 + +1.6
1,083,857 - -0.8
1,083,857 - +1.8
1,083,857 - -0.3
1,083,857 - +3.0
1,083,857 - +1.2
1,083,857 - +0.5
1,083,862 - +1.0
1,083,862 - +0.4
1,083,862 - +0.6
1,083,878 - -0.1
1,083,917 - -0.0
1,083,932 - -0.3
1,083,935 + -0.6
1,083,935 + +2.0
1,083,935 + +0.6
1,083,935 + +1.4
1,083,935 + +2.2
1,083,935 + +1.4
1,083,935 + +0.2
1,083,935 + -1.6
1,083,943 - -0.2
1,083,943 - -0.3
1,083,943 - -0.4
1,083,943 - -1.3
1,083,943 - +0.4
1,083,943 - +0.1
1,083,943 - +0.5
1,083,943 - -0.7
1,083,943 - -0.6
1,083,943 - -0.3
1,083,943 - -0.0
1,083,943 - +1.0
1,083,943 - -0.7
1,083,943 - -0.0
1,083,943 - +0.5
1,083,943 - -1.9
1,083,958 + -0.0
1,084,012 + B158DRAFT_1045 0.11 -0.5
1,084,020 - B158DRAFT_1045 0.12 -0.6
1,084,042 - B158DRAFT_1045 0.14 +1.4
1,084,093 - B158DRAFT_1045 0.20 +2.3
1,084,130 - B158DRAFT_1045 0.25 -0.9
1,084,130 - B158DRAFT_1045 0.25 +1.0
1,084,180 - B158DRAFT_1045 0.30 +0.2
1,084,217 - B158DRAFT_1045 0.35 +1.0
1,084,242 + B158DRAFT_1045 0.38 -0.4
1,084,330 + B158DRAFT_1045 0.48 +1.3
1,084,330 + B158DRAFT_1045 0.48 +2.6
1,084,330 + B158DRAFT_1045 0.48 +0.5
1,084,330 + B158DRAFT_1045 0.48 +1.6
1,084,335 + B158DRAFT_1045 0.48 -1.0
1,084,335 + B158DRAFT_1045 0.48 -0.0
1,084,335 + B158DRAFT_1045 0.48 -1.3
1,084,335 + B158DRAFT_1045 0.48 -0.3
1,084,335 + B158DRAFT_1045 0.48 -0.2
1,084,340 + B158DRAFT_1045 0.49 +0.4
1,084,343 - B158DRAFT_1045 0.49 +0.4
1,084,343 - B158DRAFT_1045 0.49 +1.3
1,084,343 - B158DRAFT_1045 0.49 +1.7
1,084,348 - B158DRAFT_1045 0.50 -1.2
1,084,348 - B158DRAFT_1045 0.50 +1.1
1,084,421 + B158DRAFT_1045 0.58 -0.1
1,084,428 + B158DRAFT_1045 0.59 -0.7
1,084,428 + B158DRAFT_1045 0.59 -0.1
1,084,555 + B158DRAFT_1045 0.74 +2.0
1,084,555 + B158DRAFT_1045 0.74 +0.6
1,084,651 + B158DRAFT_1045 0.85 -0.5
1,084,765 + -0.0
1,084,765 + -0.5
1,084,765 + -1.7
1,084,765 + -0.6
1,084,773 - +0.9
1,084,773 - +0.2
1,084,773 - +0.5
1,084,773 - +0.0
1,084,773 - +0.0
1,084,773 - +0.1
1,084,773 - -0.2
1,084,773 - +0.2
1,084,773 - +0.3
1,084,938 - B158DRAFT_1046 0.17 -0.2
1,084,964 - B158DRAFT_1046 0.19 -1.0
1,084,966 + B158DRAFT_1046 0.20 -1.3
1,084,966 + B158DRAFT_1046 0.20 +1.4
1,084,974 - B158DRAFT_1046 0.20 +1.7
1,084,980 + B158DRAFT_1046 0.21 +0.6
1,084,988 - B158DRAFT_1046 0.22 +0.7
1,085,035 + B158DRAFT_1046 0.27 +0.2
1,085,082 + B158DRAFT_1046 0.32 -0.7
1,085,090 - B158DRAFT_1046 0.33 +0.8
1,085,097 + B158DRAFT_1046 0.33 -1.7
1,085,098 - B158DRAFT_1046 0.33 +0.2
1,085,105 - B158DRAFT_1046 0.34 +0.3
1,085,109 + B158DRAFT_1046 0.34 +0.7
1,085,179 + B158DRAFT_1046 0.42 -0.5
1,085,179 + B158DRAFT_1046 0.42 -0.0
1,085,187 - B158DRAFT_1046 0.43 -0.5
1,085,192 - B158DRAFT_1046 0.43 +1.8
1,085,380 - B158DRAFT_1046 0.63 -0.6
1,085,386 + B158DRAFT_1046 0.63 -1.2
1,085,394 - B158DRAFT_1046 0.64 +0.4
1,085,401 + B158DRAFT_1046 0.65 +1.1
1,085,474 + B158DRAFT_1046 0.72 +0.2
1,085,494 + B158DRAFT_1046 0.75 -0.0
1,085,502 - B158DRAFT_1046 0.75 +1.5
1,085,502 - B158DRAFT_1046 0.75 -0.8
1,085,502 - B158DRAFT_1046 0.75 +1.4
1,085,502 - B158DRAFT_1046 0.75 +0.3
1,085,502 - B158DRAFT_1046 0.75 +2.0
1,085,502 - B158DRAFT_1046 0.75 -0.3
1,085,502 - B158DRAFT_1046 0.75 +1.3
1,085,513 - B158DRAFT_1046 0.77 +0.2
1,085,525 + B158DRAFT_1046 0.78 +2.0
1,085,538 + B158DRAFT_1046 0.79 -0.6
1,085,538 + B158DRAFT_1046 0.79 +1.0
1,085,543 + B158DRAFT_1046 0.80 +1.7
1,085,543 + B158DRAFT_1046 0.80 +1.3
1,085,551 - B158DRAFT_1046 0.81 -1.0
1,085,572 - B158DRAFT_1046 0.83 +1.0
1,085,600 + B158DRAFT_1046 0.86 -0.4
1,085,623 - B158DRAFT_1046 0.88 +0.6
1,085,662 + +0.7
1,085,670 - +0.1
1,085,670 - -0.0
1,085,670 - +1.6
1,085,714 - +1.2
1,085,751 + -1.3
1,085,762 + -0.0
1,085,770 - -0.0
1,085,865 + +1.3
1,086,004 + B158DRAFT_1047 0.16 +0.1
1,086,024 + B158DRAFT_1047 0.17 +0.8
1,086,037 - B158DRAFT_1047 0.18 +0.6
1,086,037 - B158DRAFT_1047 0.18 +0.7
1,086,049 - B158DRAFT_1047 0.19 +0.4
1,086,049 - B158DRAFT_1047 0.19 +0.9
1,086,100 + B158DRAFT_1047 0.22 +2.6
1,086,100 + B158DRAFT_1047 0.22 +0.6
1,086,106 + B158DRAFT_1047 0.22 +0.8
1,086,107 - B158DRAFT_1047 0.22 +1.4
1,086,204 + B158DRAFT_1047 0.28 +1.0
1,086,253 - B158DRAFT_1047 0.31 +0.8
1,086,292 + B158DRAFT_1047 0.33 +0.4
1,086,311 + B158DRAFT_1047 0.35 -0.0
1,086,319 - B158DRAFT_1047 0.35 +0.6
1,086,394 + B158DRAFT_1047 0.40 -0.1
1,086,402 - B158DRAFT_1047 0.40 +0.4
1,086,437 + B158DRAFT_1047 0.42 -1.2
1,086,445 - B158DRAFT_1047 0.43 +2.0
1,086,538 + B158DRAFT_1047 0.48 +1.8
1,086,546 - B158DRAFT_1047 0.49 +2.6
1,086,574 - B158DRAFT_1047 0.50 -0.5
1,086,597 - B158DRAFT_1047 0.52 +1.1
1,086,607 - B158DRAFT_1047 0.52 +1.3
1,086,624 - B158DRAFT_1047 0.53 -0.5
1,086,624 - B158DRAFT_1047 0.53 -0.2
1,086,734 - B158DRAFT_1047 0.60 -0.1

Or see this region's nucleotide sequence