Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0961

Experiment: m.b. Tetracycline 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0960 and B158DRAFT_0961 are separated by 427 nucleotidesB158DRAFT_0961 and B158DRAFT_0962 overlap by 4 nucleotides B158DRAFT_0960: B158DRAFT_0960 - Site-specific recombinases, DNA invertase Pin homologs, at 991,081 to 991,635 _0960 B158DRAFT_0961: B158DRAFT_0961 - hypothetical protein, at 992,063 to 993,115 _0961 B158DRAFT_0962: B158DRAFT_0962 - Restriction endonuclease, at 993,112 to 994,197 _0962 Position (kb) 992 993 994Strain fitness (log2 ratio) -2 -1 0 1at 991.094 kb on + strandat 991.094 kb on + strandat 991.150 kb on + strand, within B158DRAFT_0960at 991.150 kb on + strand, within B158DRAFT_0960at 991.258 kb on + strand, within B158DRAFT_0960at 991.286 kb on + strand, within B158DRAFT_0960at 991.294 kb on - strand, within B158DRAFT_0960at 991.405 kb on + strand, within B158DRAFT_0960at 991.422 kb on + strand, within B158DRAFT_0960at 991.422 kb on + strand, within B158DRAFT_0960at 991.430 kb on - strand, within B158DRAFT_0960at 991.430 kb on - strand, within B158DRAFT_0960at 991.440 kb on - strand, within B158DRAFT_0960at 991.461 kb on - strand, within B158DRAFT_0960at 991.492 kb on - strand, within B158DRAFT_0960at 991.548 kb on - strand, within B158DRAFT_0960at 991.654 kb on + strandat 991.678 kb on + strandat 991.723 kb on + strandat 991.731 kb on - strandat 991.735 kb on + strandat 991.794 kb on + strandat 991.953 kb on - strandat 991.978 kb on + strandat 992.319 kb on + strand, within B158DRAFT_0961at 992.429 kb on - strand, within B158DRAFT_0961at 992.431 kb on + strand, within B158DRAFT_0961at 992.439 kb on - strand, within B158DRAFT_0961at 992.439 kb on - strand, within B158DRAFT_0961at 992.439 kb on - strand, within B158DRAFT_0961at 992.793 kb on + strand, within B158DRAFT_0961at 992.801 kb on - strand, within B158DRAFT_0961at 992.873 kb on + strand, within B158DRAFT_0961at 992.875 kb on + strand, within B158DRAFT_0961at 992.883 kb on - strand, within B158DRAFT_0961at 992.908 kb on + strand, within B158DRAFT_0961at 992.908 kb on + strand, within B158DRAFT_0961at 992.908 kb on + strand, within B158DRAFT_0961at 992.913 kb on + strand, within B158DRAFT_0961at 992.916 kb on - strand, within B158DRAFT_0961at 992.916 kb on - strand, within B158DRAFT_0961at 992.916 kb on - strand, within B158DRAFT_0961at 992.916 kb on - strand, within B158DRAFT_0961at 992.916 kb on - strand, within B158DRAFT_0961at 992.916 kb on - strand, within B158DRAFT_0961at 993.022 kb on + strandat 993.306 kb on + strand, within B158DRAFT_0962at 993.314 kb on - strand, within B158DRAFT_0962at 993.354 kb on + strand, within B158DRAFT_0962at 993.405 kb on - strand, within B158DRAFT_0962at 993.573 kb on + strand, within B158DRAFT_0962at 993.581 kb on - strand, within B158DRAFT_0962at 993.842 kb on + strand, within B158DRAFT_0962at 993.848 kb on - strand, within B158DRAFT_0962

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.4 mg/ml
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991,094 + -0.4
991,094 + -0.6
991,150 + B158DRAFT_0960 0.12 +0.4
991,150 + B158DRAFT_0960 0.12 -0.1
991,258 + B158DRAFT_0960 0.32 +0.0
991,286 + B158DRAFT_0960 0.37 -0.8
991,294 - B158DRAFT_0960 0.38 -0.9
991,405 + B158DRAFT_0960 0.58 -0.6
991,422 + B158DRAFT_0960 0.61 +0.0
991,422 + B158DRAFT_0960 0.61 -0.3
991,430 - B158DRAFT_0960 0.63 +0.5
991,430 - B158DRAFT_0960 0.63 -0.8
991,440 - B158DRAFT_0960 0.65 -1.0
991,461 - B158DRAFT_0960 0.68 -0.0
991,492 - B158DRAFT_0960 0.74 +0.4
991,548 - B158DRAFT_0960 0.84 -1.4
991,654 + +1.2
991,678 + +0.0
991,723 + -0.4
991,731 - +0.0
991,735 + +0.8
991,794 + -0.0
991,953 - +0.1
991,978 + -0.6
992,319 + B158DRAFT_0961 0.24 +0.2
992,429 - B158DRAFT_0961 0.35 -0.1
992,431 + B158DRAFT_0961 0.35 -0.2
992,439 - B158DRAFT_0961 0.36 -0.5
992,439 - B158DRAFT_0961 0.36 -2.0
992,439 - B158DRAFT_0961 0.36 +1.3
992,793 + B158DRAFT_0961 0.69 -0.2
992,801 - B158DRAFT_0961 0.70 -1.0
992,873 + B158DRAFT_0961 0.77 -1.4
992,875 + B158DRAFT_0961 0.77 -1.0
992,883 - B158DRAFT_0961 0.78 -1.0
992,908 + B158DRAFT_0961 0.80 +0.7
992,908 + B158DRAFT_0961 0.80 +0.1
992,908 + B158DRAFT_0961 0.80 -0.8
992,913 + B158DRAFT_0961 0.81 +0.3
992,916 - B158DRAFT_0961 0.81 -0.4
992,916 - B158DRAFT_0961 0.81 -2.1
992,916 - B158DRAFT_0961 0.81 -0.4
992,916 - B158DRAFT_0961 0.81 -0.5
992,916 - B158DRAFT_0961 0.81 -1.4
992,916 - B158DRAFT_0961 0.81 -0.1
993,022 + -0.4
993,306 + B158DRAFT_0962 0.18 -0.2
993,314 - B158DRAFT_0962 0.19 -0.7
993,354 + B158DRAFT_0962 0.22 +0.1
993,405 - B158DRAFT_0962 0.27 -0.9
993,573 + B158DRAFT_0962 0.42 +0.0
993,581 - B158DRAFT_0962 0.43 -0.7
993,842 + B158DRAFT_0962 0.67 +0.3
993,848 - B158DRAFT_0962 0.68 +0.0

Or see this region's nucleotide sequence