Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1701

Experiment: m.b. Tetracycline 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1699 and B158DRAFT_1700 are separated by 77 nucleotidesB158DRAFT_1700 and B158DRAFT_1701 are separated by 69 nucleotidesB158DRAFT_1701 and B158DRAFT_1702 are separated by 20 nucleotidesB158DRAFT_1702 and B158DRAFT_1703 are separated by 20 nucleotides B158DRAFT_1699: B158DRAFT_1699 - Imidazolonepropionase and related amidohydrolases, at 1,775,435 to 1,776,832 _1699 B158DRAFT_1700: B158DRAFT_1700 - Predicted membrane protein, at 1,776,910 to 1,777,344 _1700 B158DRAFT_1701: B158DRAFT_1701 - hypothetical protein, at 1,777,414 to 1,778,196 _1701 B158DRAFT_1702: B158DRAFT_1702 - probable methyltransferase, at 1,778,217 to 1,779,164 _1702 B158DRAFT_1703: B158DRAFT_1703 - TIGR03440 family protein, at 1,779,185 to 1,780,522 _1703 Position (kb) 1777 1778 1779Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1776.500 kb on + strand, within B158DRAFT_1699at 1776.573 kb on - strand, within B158DRAFT_1699at 1776.596 kb on + strand, within B158DRAFT_1699at 1776.604 kb on - strand, within B158DRAFT_1699at 1776.633 kb on + strand, within B158DRAFT_1699at 1776.663 kb on + strand, within B158DRAFT_1699at 1776.671 kb on - strand, within B158DRAFT_1699at 1776.671 kb on - strand, within B158DRAFT_1699at 1776.671 kb on - strand, within B158DRAFT_1699at 1776.688 kb on + strand, within B158DRAFT_1699at 1776.688 kb on + strand, within B158DRAFT_1699at 1776.716 kb on + strandat 1776.725 kb on - strandat 1776.933 kb on + strandat 1777.001 kb on + strand, within B158DRAFT_1700at 1777.134 kb on - strand, within B158DRAFT_1700at 1777.139 kb on - strand, within B158DRAFT_1700at 1777.158 kb on - strand, within B158DRAFT_1700at 1777.239 kb on + strand, within B158DRAFT_1700at 1777.240 kb on - strand, within B158DRAFT_1700at 1777.240 kb on - strand, within B158DRAFT_1700at 1777.451 kb on - strandat 1777.494 kb on - strand, within B158DRAFT_1701at 1777.499 kb on - strand, within B158DRAFT_1701at 1777.611 kb on + strand, within B158DRAFT_1701at 1777.611 kb on + strand, within B158DRAFT_1701at 1777.611 kb on + strand, within B158DRAFT_1701at 1777.611 kb on + strand, within B158DRAFT_1701at 1777.611 kb on + strand, within B158DRAFT_1701at 1777.611 kb on + strand, within B158DRAFT_1701at 1777.611 kb on + strand, within B158DRAFT_1701at 1777.611 kb on + strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.619 kb on - strand, within B158DRAFT_1701at 1777.657 kb on - strand, within B158DRAFT_1701at 1777.659 kb on - strand, within B158DRAFT_1701at 1777.691 kb on + strand, within B158DRAFT_1701at 1777.720 kb on + strand, within B158DRAFT_1701at 1777.720 kb on + strand, within B158DRAFT_1701at 1777.720 kb on + strand, within B158DRAFT_1701at 1777.720 kb on + strand, within B158DRAFT_1701at 1777.720 kb on + strand, within B158DRAFT_1701at 1777.720 kb on + strand, within B158DRAFT_1701at 1777.728 kb on - strand, within B158DRAFT_1701at 1777.728 kb on - strand, within B158DRAFT_1701at 1777.728 kb on - strand, within B158DRAFT_1701at 1777.814 kb on + strand, within B158DRAFT_1701at 1777.822 kb on - strand, within B158DRAFT_1701at 1777.847 kb on + strand, within B158DRAFT_1701at 1777.852 kb on + strand, within B158DRAFT_1701at 1777.855 kb on - strand, within B158DRAFT_1701at 1777.901 kb on + strand, within B158DRAFT_1701at 1777.919 kb on + strand, within B158DRAFT_1701at 1778.069 kb on - strand, within B158DRAFT_1701at 1778.069 kb on - strand, within B158DRAFT_1701at 1778.130 kb on - strandat 1778.152 kb on - strandat 1778.166 kb on - strandat 1778.167 kb on - strandat 1778.223 kb on - strandat 1778.320 kb on + strand, within B158DRAFT_1702at 1778.320 kb on + strand, within B158DRAFT_1702at 1778.328 kb on - strand, within B158DRAFT_1702at 1778.419 kb on - strand, within B158DRAFT_1702at 1778.536 kb on + strand, within B158DRAFT_1702at 1778.543 kb on + strand, within B158DRAFT_1702at 1778.551 kb on + strand, within B158DRAFT_1702at 1778.551 kb on + strand, within B158DRAFT_1702at 1778.551 kb on + strand, within B158DRAFT_1702at 1778.568 kb on + strand, within B158DRAFT_1702at 1778.576 kb on - strand, within B158DRAFT_1702at 1778.710 kb on + strand, within B158DRAFT_1702at 1778.718 kb on - strand, within B158DRAFT_1702at 1778.787 kb on - strand, within B158DRAFT_1702at 1778.799 kb on - strand, within B158DRAFT_1702at 1778.856 kb on + strand, within B158DRAFT_1702at 1778.864 kb on - strand, within B158DRAFT_1702at 1778.970 kb on + strand, within B158DRAFT_1702at 1778.978 kb on - strand, within B158DRAFT_1702at 1779.050 kb on + strand, within B158DRAFT_1702at 1779.050 kb on + strand, within B158DRAFT_1702

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.2 mg/ml
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1,776,500 + B158DRAFT_1699 0.76 -0.5
1,776,573 - B158DRAFT_1699 0.81 +0.6
1,776,596 + B158DRAFT_1699 0.83 -0.9
1,776,604 - B158DRAFT_1699 0.84 -0.3
1,776,633 + B158DRAFT_1699 0.86 -0.1
1,776,663 + B158DRAFT_1699 0.88 -0.3
1,776,671 - B158DRAFT_1699 0.88 -0.1
1,776,671 - B158DRAFT_1699 0.88 -0.1
1,776,671 - B158DRAFT_1699 0.88 -0.8
1,776,688 + B158DRAFT_1699 0.90 -1.2
1,776,688 + B158DRAFT_1699 0.90 -3.3
1,776,716 + +1.0
1,776,725 - -0.5
1,776,933 + -1.3
1,777,001 + B158DRAFT_1700 0.21 -0.1
1,777,134 - B158DRAFT_1700 0.51 -1.1
1,777,139 - B158DRAFT_1700 0.53 -0.0
1,777,158 - B158DRAFT_1700 0.57 -0.8
1,777,239 + B158DRAFT_1700 0.76 +0.1
1,777,240 - B158DRAFT_1700 0.76 -1.2
1,777,240 - B158DRAFT_1700 0.76 -0.8
1,777,451 - +0.3
1,777,494 - B158DRAFT_1701 0.10 +0.2
1,777,499 - B158DRAFT_1701 0.11 -0.6
1,777,611 + B158DRAFT_1701 0.25 +0.9
1,777,611 + B158DRAFT_1701 0.25 -0.4
1,777,611 + B158DRAFT_1701 0.25 +0.0
1,777,611 + B158DRAFT_1701 0.25 +0.3
1,777,611 + B158DRAFT_1701 0.25 -0.2
1,777,611 + B158DRAFT_1701 0.25 -0.1
1,777,611 + B158DRAFT_1701 0.25 -0.2
1,777,611 + B158DRAFT_1701 0.25 -0.1
1,777,619 - B158DRAFT_1701 0.26 -0.2
1,777,619 - B158DRAFT_1701 0.26 -0.3
1,777,619 - B158DRAFT_1701 0.26 +0.1
1,777,619 - B158DRAFT_1701 0.26 -0.0
1,777,619 - B158DRAFT_1701 0.26 -1.2
1,777,619 - B158DRAFT_1701 0.26 -0.9
1,777,619 - B158DRAFT_1701 0.26 -0.0
1,777,619 - B158DRAFT_1701 0.26 +0.2
1,777,619 - B158DRAFT_1701 0.26 -0.3
1,777,619 - B158DRAFT_1701 0.26 -0.7
1,777,619 - B158DRAFT_1701 0.26 +0.3
1,777,619 - B158DRAFT_1701 0.26 -0.6
1,777,619 - B158DRAFT_1701 0.26 -0.4
1,777,619 - B158DRAFT_1701 0.26 +0.0
1,777,619 - B158DRAFT_1701 0.26 -0.0
1,777,657 - B158DRAFT_1701 0.31 +0.5
1,777,659 - B158DRAFT_1701 0.31 +0.2
1,777,691 + B158DRAFT_1701 0.35 -1.2
1,777,720 + B158DRAFT_1701 0.39 +0.2
1,777,720 + B158DRAFT_1701 0.39 -0.4
1,777,720 + B158DRAFT_1701 0.39 +0.8
1,777,720 + B158DRAFT_1701 0.39 +0.0
1,777,720 + B158DRAFT_1701 0.39 -0.4
1,777,720 + B158DRAFT_1701 0.39 -1.1
1,777,728 - B158DRAFT_1701 0.40 -0.2
1,777,728 - B158DRAFT_1701 0.40 +0.4
1,777,728 - B158DRAFT_1701 0.40 -0.1
1,777,814 + B158DRAFT_1701 0.51 -0.5
1,777,822 - B158DRAFT_1701 0.52 +2.2
1,777,847 + B158DRAFT_1701 0.55 -0.9
1,777,852 + B158DRAFT_1701 0.56 -0.3
1,777,855 - B158DRAFT_1701 0.56 +0.3
1,777,901 + B158DRAFT_1701 0.62 +1.4
1,777,919 + B158DRAFT_1701 0.64 +0.0
1,778,069 - B158DRAFT_1701 0.84 -0.6
1,778,069 - B158DRAFT_1701 0.84 +0.1
1,778,130 - +0.7
1,778,152 - -1.3
1,778,166 - -1.7
1,778,167 - +0.8
1,778,223 - -0.3
1,778,320 + B158DRAFT_1702 0.11 -0.5
1,778,320 + B158DRAFT_1702 0.11 -1.9
1,778,328 - B158DRAFT_1702 0.12 +0.2
1,778,419 - B158DRAFT_1702 0.21 +0.2
1,778,536 + B158DRAFT_1702 0.34 -0.8
1,778,543 + B158DRAFT_1702 0.34 -0.1
1,778,551 + B158DRAFT_1702 0.35 +0.0
1,778,551 + B158DRAFT_1702 0.35 -0.3
1,778,551 + B158DRAFT_1702 0.35 +0.3
1,778,568 + B158DRAFT_1702 0.37 -0.6
1,778,576 - B158DRAFT_1702 0.38 -0.7
1,778,710 + B158DRAFT_1702 0.52 -1.0
1,778,718 - B158DRAFT_1702 0.53 -0.8
1,778,787 - B158DRAFT_1702 0.60 +0.3
1,778,799 - B158DRAFT_1702 0.61 -0.3
1,778,856 + B158DRAFT_1702 0.67 -0.4
1,778,864 - B158DRAFT_1702 0.68 -2.3
1,778,970 + B158DRAFT_1702 0.79 -0.4
1,778,978 - B158DRAFT_1702 0.80 -0.1
1,779,050 + B158DRAFT_1702 0.88 +0.3
1,779,050 + B158DRAFT_1702 0.88 -0.5

Or see this region's nucleotide sequence