Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2308

Experiment: m.b. Doxycycline hyclate 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2306 and B158DRAFT_2307 are separated by 17 nucleotidesB158DRAFT_2307 and B158DRAFT_2308 are separated by 21 nucleotidesB158DRAFT_2308 and B158DRAFT_2309 are separated by 118 nucleotides B158DRAFT_2306: B158DRAFT_2306 - tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 467,079 to 468,296 _2306 B158DRAFT_2307: B158DRAFT_2307 - condensin subunit ScpA, at 468,314 to 469,231 _2307 B158DRAFT_2308: B158DRAFT_2308 - segregation and condensation protein B, at 469,253 to 470,206 _2308 B158DRAFT_2309: B158DRAFT_2309 - Response regulator containing a CheY-like receiver domain and a GGDEF domain, at 470,325 to 470,894 _2309 Position (kb) 469 470 471Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 468.393 kb on + strandat 468.401 kb on - strandat 468.457 kb on - strand, within B158DRAFT_2307at 468.730 kb on - strand, within B158DRAFT_2307at 468.784 kb on - strand, within B158DRAFT_2307at 468.835 kb on + strand, within B158DRAFT_2307at 468.899 kb on + strand, within B158DRAFT_2307at 468.907 kb on - strand, within B158DRAFT_2307at 468.907 kb on - strand, within B158DRAFT_2307at 468.930 kb on + strand, within B158DRAFT_2307at 468.940 kb on + strand, within B158DRAFT_2307at 468.940 kb on + strand, within B158DRAFT_2307at 469.104 kb on + strand, within B158DRAFT_2307at 469.145 kb on + strandat 469.145 kb on + strandat 469.150 kb on + strandat 469.153 kb on - strandat 469.178 kb on - strandat 469.178 kb on - strandat 469.190 kb on + strandat 469.190 kb on + strandat 469.198 kb on - strandat 469.198 kb on - strandat 469.419 kb on + strand, within B158DRAFT_2308at 469.419 kb on + strand, within B158DRAFT_2308at 469.419 kb on + strand, within B158DRAFT_2308at 469.419 kb on + strand, within B158DRAFT_2308at 469.419 kb on + strand, within B158DRAFT_2308at 469.419 kb on + strand, within B158DRAFT_2308at 469.419 kb on + strand, within B158DRAFT_2308at 469.419 kb on + strand, within B158DRAFT_2308at 469.419 kb on + strand, within B158DRAFT_2308at 469.419 kb on + strand, within B158DRAFT_2308at 469.419 kb on + strand, within B158DRAFT_2308at 469.419 kb on + strand, within B158DRAFT_2308at 469.419 kb on + strand, within B158DRAFT_2308at 469.427 kb on - strand, within B158DRAFT_2308at 469.427 kb on - strand, within B158DRAFT_2308at 469.427 kb on - strand, within B158DRAFT_2308at 469.427 kb on - strand, within B158DRAFT_2308at 469.427 kb on - strand, within B158DRAFT_2308at 469.427 kb on - strand, within B158DRAFT_2308at 469.427 kb on - strand, within B158DRAFT_2308at 469.427 kb on - strand, within B158DRAFT_2308at 469.494 kb on + strand, within B158DRAFT_2308at 469.780 kb on - strand, within B158DRAFT_2308at 469.803 kb on - strand, within B158DRAFT_2308at 469.878 kb on + strand, within B158DRAFT_2308at 469.953 kb on - strand, within B158DRAFT_2308at 469.956 kb on + strand, within B158DRAFT_2308at 469.956 kb on + strand, within B158DRAFT_2308at 470.003 kb on + strand, within B158DRAFT_2308at 470.037 kb on - strand, within B158DRAFT_2308at 470.048 kb on + strand, within B158DRAFT_2308at 470.079 kb on + strand, within B158DRAFT_2308at 470.081 kb on + strand, within B158DRAFT_2308at 470.350 kb on + strandat 470.358 kb on - strandat 470.385 kb on - strand, within B158DRAFT_2309at 470.445 kb on - strand, within B158DRAFT_2309at 470.518 kb on - strand, within B158DRAFT_2309at 470.524 kb on + strand, within B158DRAFT_2309at 470.532 kb on - strand, within B158DRAFT_2309at 470.563 kb on - strand, within B158DRAFT_2309at 470.670 kb on + strand, within B158DRAFT_2309at 470.735 kb on + strand, within B158DRAFT_2309at 470.743 kb on - strand, within B158DRAFT_2309at 470.745 kb on + strand, within B158DRAFT_2309at 470.745 kb on + strand, within B158DRAFT_2309at 470.753 kb on + strand, within B158DRAFT_2309at 470.753 kb on - strand, within B158DRAFT_2309at 470.753 kb on - strand, within B158DRAFT_2309at 470.753 kb on - strand, within B158DRAFT_2309at 470.758 kb on + strand, within B158DRAFT_2309at 470.758 kb on + strand, within B158DRAFT_2309at 470.758 kb on + strand, within B158DRAFT_2309at 470.766 kb on - strand, within B158DRAFT_2309at 470.768 kb on + strand, within B158DRAFT_2309at 470.789 kb on + strand, within B158DRAFT_2309at 470.814 kb on + strand, within B158DRAFT_2309at 470.814 kb on - strand, within B158DRAFT_2309at 470.814 kb on - strand, within B158DRAFT_2309at 470.814 kb on - strand, within B158DRAFT_2309at 471.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.03125 mg/ml
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468,393 + -2.6
468,401 - -1.4
468,457 - B158DRAFT_2307 0.16 -2.9
468,730 - B158DRAFT_2307 0.45 -2.1
468,784 - B158DRAFT_2307 0.51 -2.6
468,835 + B158DRAFT_2307 0.57 -2.1
468,899 + B158DRAFT_2307 0.64 +0.2
468,907 - B158DRAFT_2307 0.65 -2.1
468,907 - B158DRAFT_2307 0.65 -1.4
468,930 + B158DRAFT_2307 0.67 -2.1
468,940 + B158DRAFT_2307 0.68 -0.8
468,940 + B158DRAFT_2307 0.68 +0.2
469,104 + B158DRAFT_2307 0.86 -2.6
469,145 + +0.3
469,145 + +0.5
469,150 + +0.1
469,153 - +0.2
469,178 - -1.3
469,178 - -1.1
469,190 + +0.3
469,190 + +0.5
469,198 - -1.8
469,198 - -1.1
469,419 + B158DRAFT_2308 0.17 -2.4
469,419 + B158DRAFT_2308 0.17 -1.2
469,419 + B158DRAFT_2308 0.17 +1.2
469,419 + B158DRAFT_2308 0.17 -1.8
469,419 + B158DRAFT_2308 0.17 -3.5
469,419 + B158DRAFT_2308 0.17 -1.4
469,419 + B158DRAFT_2308 0.17 -2.6
469,419 + B158DRAFT_2308 0.17 -1.6
469,419 + B158DRAFT_2308 0.17 -2.6
469,419 + B158DRAFT_2308 0.17 -1.4
469,419 + B158DRAFT_2308 0.17 -2.4
469,419 + B158DRAFT_2308 0.17 -2.9
469,419 + B158DRAFT_2308 0.17 -2.1
469,427 - B158DRAFT_2308 0.18 -1.4
469,427 - B158DRAFT_2308 0.18 -2.8
469,427 - B158DRAFT_2308 0.18 -2.4
469,427 - B158DRAFT_2308 0.18 +2.2
469,427 - B158DRAFT_2308 0.18 +0.2
469,427 - B158DRAFT_2308 0.18 -0.8
469,427 - B158DRAFT_2308 0.18 -1.6
469,427 - B158DRAFT_2308 0.18 -2.4
469,494 + B158DRAFT_2308 0.25 -1.6
469,780 - B158DRAFT_2308 0.55 -0.4
469,803 - B158DRAFT_2308 0.58 +0.1
469,878 + B158DRAFT_2308 0.66 -0.0
469,953 - B158DRAFT_2308 0.73 -1.3
469,956 + B158DRAFT_2308 0.74 -1.3
469,956 + B158DRAFT_2308 0.74 +0.0
470,003 + B158DRAFT_2308 0.79 +0.3
470,037 - B158DRAFT_2308 0.82 -0.4
470,048 + B158DRAFT_2308 0.83 +0.2
470,079 + B158DRAFT_2308 0.87 +0.1
470,081 + B158DRAFT_2308 0.87 -0.1
470,350 + +0.6
470,358 - -0.4
470,385 - B158DRAFT_2309 0.11 +0.3
470,445 - B158DRAFT_2309 0.21 -0.3
470,518 - B158DRAFT_2309 0.34 -0.2
470,524 + B158DRAFT_2309 0.35 -0.1
470,532 - B158DRAFT_2309 0.36 +0.6
470,563 - B158DRAFT_2309 0.42 +0.3
470,670 + B158DRAFT_2309 0.61 -0.3
470,735 + B158DRAFT_2309 0.72 -0.2
470,743 - B158DRAFT_2309 0.73 +0.0
470,745 + B158DRAFT_2309 0.74 -1.7
470,745 + B158DRAFT_2309 0.74 +0.6
470,753 + B158DRAFT_2309 0.75 +0.2
470,753 - B158DRAFT_2309 0.75 +0.6
470,753 - B158DRAFT_2309 0.75 +0.1
470,753 - B158DRAFT_2309 0.75 -0.2
470,758 + B158DRAFT_2309 0.76 +1.2
470,758 + B158DRAFT_2309 0.76 +0.5
470,758 + B158DRAFT_2309 0.76 -0.2
470,766 - B158DRAFT_2309 0.77 -0.2
470,768 + B158DRAFT_2309 0.78 +0.3
470,789 + B158DRAFT_2309 0.81 -2.4
470,814 + B158DRAFT_2309 0.86 +0.1
470,814 - B158DRAFT_2309 0.86 +0.2
470,814 - B158DRAFT_2309 0.86 +0.4
470,814 - B158DRAFT_2309 0.86 -0.2
471,206 - -0.2

Or see this region's nucleotide sequence