Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1836

Experiment: m.b. Doxycycline hyclate 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1835 and B158DRAFT_1836 are separated by 69 nucleotidesB158DRAFT_1836 and B158DRAFT_1837 are separated by 247 nucleotidesB158DRAFT_1837 and B158DRAFT_1838 are separated by 45 nucleotides B158DRAFT_1835: B158DRAFT_1835 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 1,932,965 to 1,934,233 _1835 B158DRAFT_1836: B158DRAFT_1836 - isocitrate dehydrogenase, NADP-dependent, monomeric type, at 1,934,303 to 1,936,525 _1836 B158DRAFT_1837: B158DRAFT_1837 - ribosomal large subunit pseudouridine synthase E (EC 5.4.99.-), at 1,936,773 to 1,937,378 _1837 B158DRAFT_1838: B158DRAFT_1838 - ADP-ribose pyrophosphatase, at 1,937,424 to 1,937,933 _1838 Position (kb) 1934 1935 1936 1937Strain fitness (log2 ratio) -2 -1 0 1at 1933.320 kb on + strand, within B158DRAFT_1835at 1933.320 kb on + strand, within B158DRAFT_1835at 1933.320 kb on + strand, within B158DRAFT_1835at 1933.330 kb on - strand, within B158DRAFT_1835at 1933.347 kb on - strand, within B158DRAFT_1835at 1933.355 kb on - strand, within B158DRAFT_1835at 1933.360 kb on - strand, within B158DRAFT_1835at 1933.363 kb on - strand, within B158DRAFT_1835at 1933.389 kb on + strand, within B158DRAFT_1835at 1933.389 kb on + strand, within B158DRAFT_1835at 1933.389 kb on + strand, within B158DRAFT_1835at 1933.397 kb on - strand, within B158DRAFT_1835at 1933.397 kb on - strand, within B158DRAFT_1835at 1933.397 kb on - strand, within B158DRAFT_1835at 1933.407 kb on - strand, within B158DRAFT_1835at 1933.411 kb on + strand, within B158DRAFT_1835at 1933.411 kb on + strand, within B158DRAFT_1835at 1933.411 kb on + strand, within B158DRAFT_1835at 1933.419 kb on - strand, within B158DRAFT_1835at 1933.419 kb on - strand, within B158DRAFT_1835at 1933.463 kb on + strand, within B158DRAFT_1835at 1933.463 kb on + strand, within B158DRAFT_1835at 1933.471 kb on - strand, within B158DRAFT_1835at 1933.583 kb on + strand, within B158DRAFT_1835at 1933.591 kb on - strand, within B158DRAFT_1835at 1933.591 kb on - strand, within B158DRAFT_1835at 1933.591 kb on - strand, within B158DRAFT_1835at 1933.591 kb on - strand, within B158DRAFT_1835at 1933.606 kb on + strand, within B158DRAFT_1835at 1933.650 kb on + strand, within B158DRAFT_1835at 1933.653 kb on + strand, within B158DRAFT_1835at 1933.668 kb on - strand, within B158DRAFT_1835at 1933.672 kb on + strand, within B158DRAFT_1835at 1933.750 kb on - strand, within B158DRAFT_1835at 1933.752 kb on - strand, within B158DRAFT_1835at 1933.797 kb on + strand, within B158DRAFT_1835at 1933.800 kb on + strand, within B158DRAFT_1835at 1933.800 kb on + strand, within B158DRAFT_1835at 1933.808 kb on - strand, within B158DRAFT_1835at 1933.834 kb on + strand, within B158DRAFT_1835at 1933.842 kb on + strand, within B158DRAFT_1835at 1933.873 kb on + strand, within B158DRAFT_1835at 1933.893 kb on + strand, within B158DRAFT_1835at 1933.893 kb on + strand, within B158DRAFT_1835at 1933.901 kb on - strand, within B158DRAFT_1835at 1933.901 kb on - strand, within B158DRAFT_1835at 1933.901 kb on - strand, within B158DRAFT_1835at 1933.901 kb on - strand, within B158DRAFT_1835at 1933.947 kb on + strand, within B158DRAFT_1835at 1933.955 kb on - strand, within B158DRAFT_1835at 1933.955 kb on - strand, within B158DRAFT_1835at 1933.957 kb on - strand, within B158DRAFT_1835at 1934.021 kb on + strand, within B158DRAFT_1835at 1934.073 kb on + strand, within B158DRAFT_1835at 1934.073 kb on + strand, within B158DRAFT_1835at 1934.073 kb on + strand, within B158DRAFT_1835at 1934.073 kb on + strand, within B158DRAFT_1835at 1934.073 kb on + strand, within B158DRAFT_1835at 1934.073 kb on + strand, within B158DRAFT_1835at 1934.081 kb on - strand, within B158DRAFT_1835at 1934.081 kb on - strand, within B158DRAFT_1835at 1934.081 kb on - strand, within B158DRAFT_1835at 1934.081 kb on - strand, within B158DRAFT_1835at 1934.117 kb on + strandat 1934.117 kb on + strandat 1934.117 kb on + strandat 1934.117 kb on + strandat 1934.117 kb on + strandat 1934.117 kb on + strandat 1934.142 kb on + strandat 1934.142 kb on - strandat 1934.158 kb on + strandat 1934.158 kb on + strandat 1934.158 kb on + strandat 1934.158 kb on + strandat 1934.161 kb on - strandat 1934.166 kb on - strandat 1934.179 kb on + strandat 1934.179 kb on + strandat 1934.179 kb on + strandat 1934.187 kb on - strandat 1934.187 kb on - strandat 1934.191 kb on + strandat 1934.197 kb on - strandat 1934.197 kb on - strandat 1934.197 kb on - strandat 1934.199 kb on - strandat 1936.690 kb on + strandat 1936.767 kb on - strandat 1936.767 kb on - strandat 1936.800 kb on + strandat 1936.802 kb on + strandat 1936.858 kb on + strand, within B158DRAFT_1837at 1936.858 kb on + strand, within B158DRAFT_1837at 1936.866 kb on - strand, within B158DRAFT_1837at 1936.874 kb on + strand, within B158DRAFT_1837at 1936.879 kb on + strand, within B158DRAFT_1837at 1936.911 kb on + strand, within B158DRAFT_1837at 1936.912 kb on + strand, within B158DRAFT_1837at 1936.919 kb on - strand, within B158DRAFT_1837at 1936.920 kb on - strand, within B158DRAFT_1837at 1936.950 kb on - strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.038 kb on + strand, within B158DRAFT_1837at 1937.038 kb on + strand, within B158DRAFT_1837at 1937.041 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.080 kb on + strand, within B158DRAFT_1837at 1937.098 kb on + strand, within B158DRAFT_1837at 1937.098 kb on + strand, within B158DRAFT_1837at 1937.098 kb on + strand, within B158DRAFT_1837at 1937.106 kb on - strand, within B158DRAFT_1837at 1937.106 kb on - strand, within B158DRAFT_1837at 1937.106 kb on - strand, within B158DRAFT_1837at 1937.166 kb on + strand, within B158DRAFT_1837at 1937.194 kb on - strand, within B158DRAFT_1837at 1937.214 kb on + strand, within B158DRAFT_1837at 1937.222 kb on - strand, within B158DRAFT_1837at 1937.222 kb on - strand, within B158DRAFT_1837at 1937.229 kb on + strand, within B158DRAFT_1837at 1937.247 kb on + strand, within B158DRAFT_1837at 1937.323 kb on - strandat 1937.327 kb on + strandat 1937.332 kb on + strandat 1937.396 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.03125 mg/ml
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1,933,320 + B158DRAFT_1835 0.28 -0.1
1,933,320 + B158DRAFT_1835 0.28 -0.1
1,933,320 + B158DRAFT_1835 0.28 -1.3
1,933,330 - B158DRAFT_1835 0.29 -0.5
1,933,347 - B158DRAFT_1835 0.30 -0.3
1,933,355 - B158DRAFT_1835 0.31 -0.8
1,933,360 - B158DRAFT_1835 0.31 -0.5
1,933,363 - B158DRAFT_1835 0.31 -0.1
1,933,389 + B158DRAFT_1835 0.33 -0.2
1,933,389 + B158DRAFT_1835 0.33 -0.2
1,933,389 + B158DRAFT_1835 0.33 -0.5
1,933,397 - B158DRAFT_1835 0.34 +0.0
1,933,397 - B158DRAFT_1835 0.34 -0.5
1,933,397 - B158DRAFT_1835 0.34 -0.7
1,933,407 - B158DRAFT_1835 0.35 -0.4
1,933,411 + B158DRAFT_1835 0.35 -0.2
1,933,411 + B158DRAFT_1835 0.35 -0.0
1,933,411 + B158DRAFT_1835 0.35 -0.2
1,933,419 - B158DRAFT_1835 0.36 -0.6
1,933,419 - B158DRAFT_1835 0.36 -0.9
1,933,463 + B158DRAFT_1835 0.39 -0.8
1,933,463 + B158DRAFT_1835 0.39 +0.6
1,933,471 - B158DRAFT_1835 0.40 -1.3
1,933,583 + B158DRAFT_1835 0.49 +0.0
1,933,591 - B158DRAFT_1835 0.49 -0.3
1,933,591 - B158DRAFT_1835 0.49 -0.5
1,933,591 - B158DRAFT_1835 0.49 -0.8
1,933,591 - B158DRAFT_1835 0.49 +0.1
1,933,606 + B158DRAFT_1835 0.51 -0.3
1,933,650 + B158DRAFT_1835 0.54 -0.3
1,933,653 + B158DRAFT_1835 0.54 -0.4
1,933,668 - B158DRAFT_1835 0.55 -0.2
1,933,672 + B158DRAFT_1835 0.56 -0.2
1,933,750 - B158DRAFT_1835 0.62 -0.2
1,933,752 - B158DRAFT_1835 0.62 -0.4
1,933,797 + B158DRAFT_1835 0.66 -0.4
1,933,800 + B158DRAFT_1835 0.66 +0.1
1,933,800 + B158DRAFT_1835 0.66 -0.2
1,933,808 - B158DRAFT_1835 0.66 -0.5
1,933,834 + B158DRAFT_1835 0.68 +0.1
1,933,842 + B158DRAFT_1835 0.69 -0.2
1,933,873 + B158DRAFT_1835 0.72 -0.6
1,933,893 + B158DRAFT_1835 0.73 -0.3
1,933,893 + B158DRAFT_1835 0.73 -0.4
1,933,901 - B158DRAFT_1835 0.74 +0.2
1,933,901 - B158DRAFT_1835 0.74 +0.9
1,933,901 - B158DRAFT_1835 0.74 -0.9
1,933,901 - B158DRAFT_1835 0.74 -0.7
1,933,947 + B158DRAFT_1835 0.77 -1.3
1,933,955 - B158DRAFT_1835 0.78 -0.5
1,933,955 - B158DRAFT_1835 0.78 -0.3
1,933,957 - B158DRAFT_1835 0.78 -0.4
1,934,021 + B158DRAFT_1835 0.83 -0.3
1,934,073 + B158DRAFT_1835 0.87 -0.7
1,934,073 + B158DRAFT_1835 0.87 -1.9
1,934,073 + B158DRAFT_1835 0.87 -0.2
1,934,073 + B158DRAFT_1835 0.87 +0.0
1,934,073 + B158DRAFT_1835 0.87 +0.3
1,934,073 + B158DRAFT_1835 0.87 +0.4
1,934,081 - B158DRAFT_1835 0.88 -0.2
1,934,081 - B158DRAFT_1835 0.88 -0.4
1,934,081 - B158DRAFT_1835 0.88 -0.3
1,934,081 - B158DRAFT_1835 0.88 +0.1
1,934,117 + -0.1
1,934,117 + -0.4
1,934,117 + -0.4
1,934,117 + -0.4
1,934,117 + -0.6
1,934,117 + +0.6
1,934,142 + +0.2
1,934,142 - -0.4
1,934,158 + -0.2
1,934,158 + +0.6
1,934,158 + -0.2
1,934,158 + -0.3
1,934,161 - -0.3
1,934,166 - -0.5
1,934,179 + -1.2
1,934,179 + -0.8
1,934,179 + +0.4
1,934,187 - -0.4
1,934,187 - -0.4
1,934,191 + -0.3
1,934,197 - -1.0
1,934,197 - +0.3
1,934,197 - +0.2
1,934,199 - -0.9
1,936,690 + -0.6
1,936,767 - -0.2
1,936,767 - -0.5
1,936,800 + -0.3
1,936,802 + -0.3
1,936,858 + B158DRAFT_1837 0.14 -0.3
1,936,858 + B158DRAFT_1837 0.14 +0.4
1,936,866 - B158DRAFT_1837 0.15 -0.5
1,936,874 + B158DRAFT_1837 0.17 +0.1
1,936,879 + B158DRAFT_1837 0.17 -0.2
1,936,911 + B158DRAFT_1837 0.23 -0.4
1,936,912 + B158DRAFT_1837 0.23 +0.0
1,936,919 - B158DRAFT_1837 0.24 +0.4
1,936,920 - B158DRAFT_1837 0.24 +0.0
1,936,950 - B158DRAFT_1837 0.29 -0.1
1,936,997 + B158DRAFT_1837 0.37 -0.0
1,936,997 + B158DRAFT_1837 0.37 -0.3
1,936,997 + B158DRAFT_1837 0.37 +0.1
1,936,997 + B158DRAFT_1837 0.37 -0.1
1,936,997 + B158DRAFT_1837 0.37 +0.1
1,937,005 - B158DRAFT_1837 0.38 +0.1
1,937,005 - B158DRAFT_1837 0.38 -0.3
1,937,005 - B158DRAFT_1837 0.38 -0.4
1,937,005 - B158DRAFT_1837 0.38 -0.9
1,937,005 - B158DRAFT_1837 0.38 -0.4
1,937,005 - B158DRAFT_1837 0.38 -0.3
1,937,005 - B158DRAFT_1837 0.38 +0.1
1,937,038 + B158DRAFT_1837 0.44 -0.9
1,937,038 + B158DRAFT_1837 0.44 -0.3
1,937,041 - B158DRAFT_1837 0.44 +0.3
1,937,046 - B158DRAFT_1837 0.45 +0.3
1,937,046 - B158DRAFT_1837 0.45 -0.0
1,937,046 - B158DRAFT_1837 0.45 -0.9
1,937,046 - B158DRAFT_1837 0.45 -0.1
1,937,046 - B158DRAFT_1837 0.45 -0.0
1,937,080 + B158DRAFT_1837 0.51 -0.7
1,937,098 + B158DRAFT_1837 0.54 -0.7
1,937,098 + B158DRAFT_1837 0.54 -0.5
1,937,098 + B158DRAFT_1837 0.54 -1.5
1,937,106 - B158DRAFT_1837 0.55 -0.0
1,937,106 - B158DRAFT_1837 0.55 +0.0
1,937,106 - B158DRAFT_1837 0.55 -0.8
1,937,166 + B158DRAFT_1837 0.65 -1.2
1,937,194 - B158DRAFT_1837 0.69 -0.4
1,937,214 + B158DRAFT_1837 0.73 +0.0
1,937,222 - B158DRAFT_1837 0.74 -0.2
1,937,222 - B158DRAFT_1837 0.74 -0.8
1,937,229 + B158DRAFT_1837 0.75 -0.4
1,937,247 + B158DRAFT_1837 0.78 -1.4
1,937,323 - -0.5
1,937,327 + -1.3
1,937,332 + +0.8
1,937,396 + -0.2

Or see this region's nucleotide sequence