Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1780

Experiment: m.b. Doxycycline hyclate 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1779 and B158DRAFT_1780 are separated by 127 nucleotidesB158DRAFT_1780 and B158DRAFT_1781 are separated by 190 nucleotides B158DRAFT_1779: B158DRAFT_1779 - ATP-dependent helicase HrpA, at 1,868,775 to 1,872,734 _1779 B158DRAFT_1780: B158DRAFT_1780 - hypothetical protein, at 1,872,862 to 1,873,698 _1780 B158DRAFT_1781: B158DRAFT_1781 - Acyl-CoA dehydrogenases, at 1,873,889 to 1,876,309 _1781 Position (kb) 1872 1873 1874Strain fitness (log2 ratio) -2 -1 0 1at 1871.868 kb on + strand, within B158DRAFT_1779at 1871.893 kb on - strand, within B158DRAFT_1779at 1871.960 kb on - strand, within B158DRAFT_1779at 1871.968 kb on - strand, within B158DRAFT_1779at 1872.059 kb on + strand, within B158DRAFT_1779at 1872.149 kb on + strand, within B158DRAFT_1779at 1872.189 kb on + strand, within B158DRAFT_1779at 1872.242 kb on + strand, within B158DRAFT_1779at 1872.247 kb on + strand, within B158DRAFT_1779at 1872.247 kb on + strand, within B158DRAFT_1779at 1872.314 kb on - strand, within B158DRAFT_1779at 1872.325 kb on - strand, within B158DRAFT_1779at 1872.340 kb on - strandat 1872.409 kb on + strandat 1872.452 kb on - strandat 1872.476 kb on + strandat 1872.476 kb on + strandat 1872.484 kb on - strandat 1872.484 kb on - strandat 1872.514 kb on + strandat 1872.613 kb on + strandat 1872.890 kb on + strandat 1872.925 kb on + strandat 1872.939 kb on + strandat 1872.939 kb on - strandat 1872.939 kb on - strandat 1872.947 kb on - strand, within B158DRAFT_1780at 1873.042 kb on - strand, within B158DRAFT_1780at 1873.124 kb on - strand, within B158DRAFT_1780at 1873.140 kb on + strand, within B158DRAFT_1780at 1873.153 kb on - strand, within B158DRAFT_1780at 1873.167 kb on + strand, within B158DRAFT_1780at 1873.167 kb on + strand, within B158DRAFT_1780at 1873.178 kb on + strand, within B158DRAFT_1780at 1873.186 kb on - strand, within B158DRAFT_1780at 1873.216 kb on + strand, within B158DRAFT_1780at 1873.237 kb on + strand, within B158DRAFT_1780at 1873.272 kb on - strand, within B158DRAFT_1780at 1873.272 kb on - strand, within B158DRAFT_1780at 1873.283 kb on - strand, within B158DRAFT_1780at 1873.352 kb on + strand, within B158DRAFT_1780at 1873.430 kb on + strand, within B158DRAFT_1780at 1873.438 kb on - strand, within B158DRAFT_1780at 1873.470 kb on - strand, within B158DRAFT_1780at 1873.480 kb on + strand, within B158DRAFT_1780at 1873.480 kb on + strand, within B158DRAFT_1780at 1873.505 kb on - strand, within B158DRAFT_1780at 1873.585 kb on + strand, within B158DRAFT_1780at 1873.592 kb on + strand, within B158DRAFT_1780at 1873.600 kb on - strand, within B158DRAFT_1780at 1873.606 kb on - strand, within B158DRAFT_1780at 1873.606 kb on - strand, within B158DRAFT_1780at 1873.609 kb on + strand, within B158DRAFT_1780at 1873.617 kb on - strandat 1873.617 kb on - strandat 1873.617 kb on - strandat 1873.685 kb on + strandat 1873.715 kb on - strandat 1873.715 kb on - strandat 1873.744 kb on - strandat 1873.879 kb on + strandat 1873.925 kb on + strandat 1873.925 kb on + strandat 1873.925 kb on + strandat 1873.925 kb on + strandat 1873.925 kb on + strandat 1873.933 kb on - strandat 1873.933 kb on - strandat 1873.933 kb on - strandat 1873.933 kb on - strandat 1873.933 kb on - strandat 1873.933 kb on - strandat 1873.933 kb on - strandat 1873.940 kb on + strandat 1873.946 kb on - strandat 1873.950 kb on + strandat 1873.971 kb on + strandat 1874.004 kb on + strandat 1874.004 kb on + strandat 1874.012 kb on - strandat 1874.012 kb on - strandat 1874.059 kb on + strandat 1874.104 kb on + strandat 1874.107 kb on - strandat 1874.121 kb on - strandat 1874.164 kb on + strand, within B158DRAFT_1781at 1874.172 kb on - strand, within B158DRAFT_1781at 1874.232 kb on - strand, within B158DRAFT_1781at 1874.258 kb on + strand, within B158DRAFT_1781at 1874.258 kb on + strand, within B158DRAFT_1781at 1874.266 kb on - strand, within B158DRAFT_1781at 1874.332 kb on - strand, within B158DRAFT_1781at 1874.412 kb on + strand, within B158DRAFT_1781at 1874.469 kb on - strand, within B158DRAFT_1781at 1874.505 kb on + strand, within B158DRAFT_1781at 1874.505 kb on + strand, within B158DRAFT_1781at 1874.513 kb on - strand, within B158DRAFT_1781at 1874.519 kb on - strand, within B158DRAFT_1781at 1874.533 kb on + strand, within B158DRAFT_1781at 1874.533 kb on - strand, within B158DRAFT_1781at 1874.546 kb on - strand, within B158DRAFT_1781at 1874.578 kb on - strand, within B158DRAFT_1781at 1874.588 kb on + strand, within B158DRAFT_1781at 1874.598 kb on + strand, within B158DRAFT_1781at 1874.598 kb on + strand, within B158DRAFT_1781at 1874.598 kb on + strand, within B158DRAFT_1781at 1874.654 kb on + strand, within B158DRAFT_1781at 1874.662 kb on - strand, within B158DRAFT_1781at 1874.662 kb on - strand, within B158DRAFT_1781at 1874.662 kb on - strand, within B158DRAFT_1781at 1874.669 kb on + strand, within B158DRAFT_1781at 1874.669 kb on + strand, within B158DRAFT_1781at 1874.669 kb on + strand, within B158DRAFT_1781at 1874.677 kb on - strand, within B158DRAFT_1781at 1874.677 kb on - strand, within B158DRAFT_1781at 1874.689 kb on + strand, within B158DRAFT_1781at 1874.698 kb on - strand, within B158DRAFT_1781

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.03125 mg/ml
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1,871,868 + B158DRAFT_1779 0.78 -1.1
1,871,893 - B158DRAFT_1779 0.79 -0.9
1,871,960 - B158DRAFT_1779 0.80 -0.7
1,871,968 - B158DRAFT_1779 0.81 -0.5
1,872,059 + B158DRAFT_1779 0.83 -0.7
1,872,149 + B158DRAFT_1779 0.85 -0.5
1,872,189 + B158DRAFT_1779 0.86 -0.6
1,872,242 + B158DRAFT_1779 0.88 -0.7
1,872,247 + B158DRAFT_1779 0.88 -0.7
1,872,247 + B158DRAFT_1779 0.88 -0.9
1,872,314 - B158DRAFT_1779 0.89 -0.9
1,872,325 - B158DRAFT_1779 0.90 -0.2
1,872,340 - -1.0
1,872,409 + -0.2
1,872,452 - -0.4
1,872,476 + -0.2
1,872,476 + -0.4
1,872,484 - -0.2
1,872,484 - -0.6
1,872,514 + +0.3
1,872,613 + -0.5
1,872,890 + +0.3
1,872,925 + -0.6
1,872,939 + -0.3
1,872,939 - +0.1
1,872,939 - -0.2
1,872,947 - B158DRAFT_1780 0.10 +0.3
1,873,042 - B158DRAFT_1780 0.22 +0.8
1,873,124 - B158DRAFT_1780 0.31 -0.7
1,873,140 + B158DRAFT_1780 0.33 -0.8
1,873,153 - B158DRAFT_1780 0.35 -0.1
1,873,167 + B158DRAFT_1780 0.36 -1.0
1,873,167 + B158DRAFT_1780 0.36 +0.3
1,873,178 + B158DRAFT_1780 0.38 +0.2
1,873,186 - B158DRAFT_1780 0.39 +0.1
1,873,216 + B158DRAFT_1780 0.42 +0.1
1,873,237 + B158DRAFT_1780 0.45 -0.3
1,873,272 - B158DRAFT_1780 0.49 +0.1
1,873,272 - B158DRAFT_1780 0.49 -0.1
1,873,283 - B158DRAFT_1780 0.50 -0.1
1,873,352 + B158DRAFT_1780 0.59 -0.1
1,873,430 + B158DRAFT_1780 0.68 -0.9
1,873,438 - B158DRAFT_1780 0.69 -0.1
1,873,470 - B158DRAFT_1780 0.73 -0.0
1,873,480 + B158DRAFT_1780 0.74 -0.2
1,873,480 + B158DRAFT_1780 0.74 -0.2
1,873,505 - B158DRAFT_1780 0.77 -0.3
1,873,585 + B158DRAFT_1780 0.86 +0.0
1,873,592 + B158DRAFT_1780 0.87 +0.2
1,873,600 - B158DRAFT_1780 0.88 -0.5
1,873,606 - B158DRAFT_1780 0.89 -0.9
1,873,606 - B158DRAFT_1780 0.89 -0.6
1,873,609 + B158DRAFT_1780 0.89 +0.1
1,873,617 - -0.9
1,873,617 - -0.4
1,873,617 - -0.5
1,873,685 + +0.1
1,873,715 - +0.0
1,873,715 - -0.0
1,873,744 - +0.7
1,873,879 + -0.3
1,873,925 + -0.6
1,873,925 + -0.1
1,873,925 + -0.3
1,873,925 + +0.3
1,873,925 + -0.1
1,873,933 - +0.3
1,873,933 - -0.1
1,873,933 - +0.0
1,873,933 - +0.1
1,873,933 - -0.2
1,873,933 - -0.4
1,873,933 - -0.3
1,873,940 + -0.2
1,873,946 - -0.3
1,873,950 + +0.1
1,873,971 + -0.8
1,874,004 + -0.4
1,874,004 + +0.0
1,874,012 - +0.3
1,874,012 - +0.9
1,874,059 + +0.4
1,874,104 + -0.1
1,874,107 - +0.1
1,874,121 - -0.2
1,874,164 + B158DRAFT_1781 0.11 -0.4
1,874,172 - B158DRAFT_1781 0.12 -0.5
1,874,232 - B158DRAFT_1781 0.14 +0.0
1,874,258 + B158DRAFT_1781 0.15 -1.7
1,874,258 + B158DRAFT_1781 0.15 -0.7
1,874,266 - B158DRAFT_1781 0.16 -0.2
1,874,332 - B158DRAFT_1781 0.18 +0.1
1,874,412 + B158DRAFT_1781 0.22 +0.0
1,874,469 - B158DRAFT_1781 0.24 -0.2
1,874,505 + B158DRAFT_1781 0.25 -0.6
1,874,505 + B158DRAFT_1781 0.25 -2.2
1,874,513 - B158DRAFT_1781 0.26 -0.7
1,874,519 - B158DRAFT_1781 0.26 -1.2
1,874,533 + B158DRAFT_1781 0.27 -0.5
1,874,533 - B158DRAFT_1781 0.27 -0.4
1,874,546 - B158DRAFT_1781 0.27 +0.0
1,874,578 - B158DRAFT_1781 0.28 -0.4
1,874,588 + B158DRAFT_1781 0.29 -0.8
1,874,598 + B158DRAFT_1781 0.29 +0.6
1,874,598 + B158DRAFT_1781 0.29 +0.1
1,874,598 + B158DRAFT_1781 0.29 +1.3
1,874,654 + B158DRAFT_1781 0.32 +0.1
1,874,662 - B158DRAFT_1781 0.32 -0.0
1,874,662 - B158DRAFT_1781 0.32 -0.3
1,874,662 - B158DRAFT_1781 0.32 +1.1
1,874,669 + B158DRAFT_1781 0.32 -0.9
1,874,669 + B158DRAFT_1781 0.32 -0.3
1,874,669 + B158DRAFT_1781 0.32 +0.0
1,874,677 - B158DRAFT_1781 0.33 +0.3
1,874,677 - B158DRAFT_1781 0.33 -0.1
1,874,689 + B158DRAFT_1781 0.33 -0.6
1,874,698 - B158DRAFT_1781 0.33 -0.8

Or see this region's nucleotide sequence