Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1271

Experiment: m.b. Doxycycline hyclate 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1270 and B158DRAFT_1271 are separated by 344 nucleotidesB158DRAFT_1271 and B158DRAFT_1272 are separated by 105 nucleotidesB158DRAFT_1272 and B158DRAFT_1273 are separated by 22 nucleotides B158DRAFT_1270: B158DRAFT_1270 - Outer membrane receptor proteins, mostly Fe transport, at 1,311,751 to 1,313,817 _1270 B158DRAFT_1271: B158DRAFT_1271 - hypothetical protein, at 1,314,162 to 1,314,695 _1271 B158DRAFT_1272: B158DRAFT_1272 - two component transcriptional regulator, LuxR family, at 1,314,801 to 1,315,439 _1272 B158DRAFT_1273: B158DRAFT_1273 - Excinuclease ABC subunit C, at 1,315,462 to 1,317,300 _1273 Position (kb) 1314 1315Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1313.210 kb on + strand, within B158DRAFT_1270at 1313.231 kb on + strand, within B158DRAFT_1270at 1313.231 kb on + strand, within B158DRAFT_1270at 1313.265 kb on + strand, within B158DRAFT_1270at 1313.265 kb on + strand, within B158DRAFT_1270at 1313.273 kb on - strand, within B158DRAFT_1270at 1313.309 kb on + strand, within B158DRAFT_1270at 1313.344 kb on - strand, within B158DRAFT_1270at 1313.357 kb on + strand, within B158DRAFT_1270at 1313.363 kb on - strand, within B158DRAFT_1270at 1313.379 kb on - strand, within B158DRAFT_1270at 1313.441 kb on + strand, within B158DRAFT_1270at 1313.441 kb on + strand, within B158DRAFT_1270at 1313.526 kb on - strand, within B158DRAFT_1270at 1313.559 kb on + strand, within B158DRAFT_1270at 1313.559 kb on + strand, within B158DRAFT_1270at 1313.559 kb on + strand, within B158DRAFT_1270at 1313.559 kb on + strand, within B158DRAFT_1270at 1313.567 kb on - strand, within B158DRAFT_1270at 1313.567 kb on - strand, within B158DRAFT_1270at 1313.567 kb on - strand, within B158DRAFT_1270at 1313.567 kb on - strand, within B158DRAFT_1270at 1313.567 kb on - strand, within B158DRAFT_1270at 1313.567 kb on - strand, within B158DRAFT_1270at 1313.567 kb on - strand, within B158DRAFT_1270at 1313.567 kb on - strand, within B158DRAFT_1270at 1313.567 kb on - strand, within B158DRAFT_1270at 1313.567 kb on - strand, within B158DRAFT_1270at 1313.567 kb on - strand, within B158DRAFT_1270at 1313.623 kb on + strandat 1313.631 kb on - strandat 1313.724 kb on + strandat 1313.726 kb on - strandat 1313.753 kb on + strandat 1313.798 kb on + strandat 1313.861 kb on + strandat 1313.861 kb on + strandat 1313.861 kb on + strandat 1313.861 kb on + strandat 1313.866 kb on + strandat 1313.866 kb on + strandat 1313.866 kb on + strandat 1313.866 kb on + strandat 1313.866 kb on + strandat 1313.867 kb on + strandat 1313.874 kb on - strandat 1313.874 kb on - strandat 1313.875 kb on - strandat 1313.930 kb on - strandat 1314.025 kb on + strandat 1314.025 kb on + strandat 1314.090 kb on + strandat 1314.090 kb on + strandat 1314.137 kb on + strandat 1314.139 kb on - strandat 1314.199 kb on - strandat 1314.222 kb on - strand, within B158DRAFT_1271at 1314.225 kb on + strand, within B158DRAFT_1271at 1314.231 kb on + strand, within B158DRAFT_1271at 1314.368 kb on + strand, within B158DRAFT_1271at 1314.405 kb on - strand, within B158DRAFT_1271at 1314.481 kb on + strand, within B158DRAFT_1271at 1314.485 kb on + strand, within B158DRAFT_1271at 1314.529 kb on + strand, within B158DRAFT_1271at 1314.535 kb on + strand, within B158DRAFT_1271at 1314.553 kb on - strand, within B158DRAFT_1271at 1314.569 kb on + strand, within B158DRAFT_1271at 1314.577 kb on - strand, within B158DRAFT_1271at 1314.625 kb on + strand, within B158DRAFT_1271at 1314.637 kb on + strand, within B158DRAFT_1271at 1314.712 kb on - strandat 1314.721 kb on - strandat 1314.792 kb on - strandat 1314.826 kb on - strandat 1314.846 kb on + strandat 1314.846 kb on + strandat 1314.846 kb on + strandat 1314.854 kb on - strandat 1314.854 kb on - strandat 1314.854 kb on - strandat 1314.854 kb on - strandat 1314.933 kb on + strand, within B158DRAFT_1272at 1314.934 kb on - strand, within B158DRAFT_1272at 1314.940 kb on + strand, within B158DRAFT_1272at 1315.005 kb on + strand, within B158DRAFT_1272at 1315.021 kb on - strand, within B158DRAFT_1272at 1315.032 kb on - strand, within B158DRAFT_1272at 1315.049 kb on + strand, within B158DRAFT_1272at 1315.054 kb on + strand, within B158DRAFT_1272at 1315.054 kb on + strand, within B158DRAFT_1272at 1315.057 kb on - strand, within B158DRAFT_1272at 1315.061 kb on + strand, within B158DRAFT_1272at 1315.062 kb on - strand, within B158DRAFT_1272at 1315.066 kb on + strand, within B158DRAFT_1272at 1315.069 kb on - strand, within B158DRAFT_1272at 1315.074 kb on - strand, within B158DRAFT_1272at 1315.076 kb on + strand, within B158DRAFT_1272at 1315.097 kb on + strand, within B158DRAFT_1272at 1315.114 kb on - strand, within B158DRAFT_1272at 1315.133 kb on + strand, within B158DRAFT_1272at 1315.133 kb on + strand, within B158DRAFT_1272at 1315.133 kb on + strand, within B158DRAFT_1272at 1315.133 kb on + strand, within B158DRAFT_1272at 1315.133 kb on + strand, within B158DRAFT_1272at 1315.133 kb on + strand, within B158DRAFT_1272at 1315.133 kb on + strand, within B158DRAFT_1272at 1315.141 kb on - strand, within B158DRAFT_1272at 1315.141 kb on - strand, within B158DRAFT_1272at 1315.141 kb on - strand, within B158DRAFT_1272at 1315.141 kb on - strand, within B158DRAFT_1272at 1315.141 kb on - strand, within B158DRAFT_1272at 1315.141 kb on - strand, within B158DRAFT_1272at 1315.174 kb on - strand, within B158DRAFT_1272at 1315.296 kb on + strand, within B158DRAFT_1272at 1315.319 kb on + strand, within B158DRAFT_1272at 1315.351 kb on - strand, within B158DRAFT_1272at 1315.440 kb on + strandat 1315.450 kb on + strandat 1315.458 kb on + strandat 1315.458 kb on - strandat 1315.458 kb on - strandat 1315.458 kb on - strandat 1315.464 kb on - strandat 1315.464 kb on - strandat 1315.482 kb on - strandat 1315.575 kb on - strandat 1315.644 kb on + strandat 1315.689 kb on - strand, within B158DRAFT_1273

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.03125 mg/ml
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1,313,210 + B158DRAFT_1270 0.71 -1.5
1,313,231 + B158DRAFT_1270 0.72 -0.5
1,313,231 + B158DRAFT_1270 0.72 -1.1
1,313,265 + B158DRAFT_1270 0.73 -2.5
1,313,265 + B158DRAFT_1270 0.73 -1.6
1,313,273 - B158DRAFT_1270 0.74 -1.1
1,313,309 + B158DRAFT_1270 0.75 -1.3
1,313,344 - B158DRAFT_1270 0.77 -1.0
1,313,357 + B158DRAFT_1270 0.78 -0.8
1,313,363 - B158DRAFT_1270 0.78 -2.0
1,313,379 - B158DRAFT_1270 0.79 -0.8
1,313,441 + B158DRAFT_1270 0.82 -1.5
1,313,441 + B158DRAFT_1270 0.82 +1.2
1,313,526 - B158DRAFT_1270 0.86 -2.1
1,313,559 + B158DRAFT_1270 0.87 +0.7
1,313,559 + B158DRAFT_1270 0.87 -0.4
1,313,559 + B158DRAFT_1270 0.87 -2.8
1,313,559 + B158DRAFT_1270 0.87 -1.2
1,313,567 - B158DRAFT_1270 0.88 -0.7
1,313,567 - B158DRAFT_1270 0.88 -1.7
1,313,567 - B158DRAFT_1270 0.88 -0.5
1,313,567 - B158DRAFT_1270 0.88 -1.1
1,313,567 - B158DRAFT_1270 0.88 -0.7
1,313,567 - B158DRAFT_1270 0.88 -1.7
1,313,567 - B158DRAFT_1270 0.88 -0.3
1,313,567 - B158DRAFT_1270 0.88 -0.8
1,313,567 - B158DRAFT_1270 0.88 -0.8
1,313,567 - B158DRAFT_1270 0.88 -1.2
1,313,567 - B158DRAFT_1270 0.88 -0.9
1,313,623 + -2.7
1,313,631 - -3.4
1,313,724 + -2.5
1,313,726 - -0.8
1,313,753 + -0.4
1,313,798 + -0.1
1,313,861 + -0.2
1,313,861 + +0.2
1,313,861 + -0.2
1,313,861 + -2.2
1,313,866 + -0.4
1,313,866 + -0.1
1,313,866 + -0.5
1,313,866 + -0.0
1,313,866 + -0.0
1,313,867 + +0.3
1,313,874 - -0.4
1,313,874 - +0.2
1,313,875 - +0.1
1,313,930 - -1.4
1,314,025 + +0.4
1,314,025 + +0.1
1,314,090 + -0.2
1,314,090 + -0.0
1,314,137 + -0.7
1,314,139 - -2.0
1,314,199 - -0.5
1,314,222 - B158DRAFT_1271 0.11 -0.1
1,314,225 + B158DRAFT_1271 0.12 +0.3
1,314,231 + B158DRAFT_1271 0.13 +0.2
1,314,368 + B158DRAFT_1271 0.39 -0.5
1,314,405 - B158DRAFT_1271 0.46 +0.5
1,314,481 + B158DRAFT_1271 0.60 -0.1
1,314,485 + B158DRAFT_1271 0.60 -0.2
1,314,529 + B158DRAFT_1271 0.69 -0.1
1,314,535 + B158DRAFT_1271 0.70 +0.4
1,314,553 - B158DRAFT_1271 0.73 +0.1
1,314,569 + B158DRAFT_1271 0.76 +1.2
1,314,577 - B158DRAFT_1271 0.78 +0.4
1,314,625 + B158DRAFT_1271 0.87 +0.1
1,314,637 + B158DRAFT_1271 0.89 +0.3
1,314,712 - +0.6
1,314,721 - -0.3
1,314,792 - -0.8
1,314,826 - -0.2
1,314,846 + -0.3
1,314,846 + -0.4
1,314,846 + +0.6
1,314,854 - -0.3
1,314,854 - -0.7
1,314,854 - +0.5
1,314,854 - -0.5
1,314,933 + B158DRAFT_1272 0.21 +1.1
1,314,934 - B158DRAFT_1272 0.21 -0.2
1,314,940 + B158DRAFT_1272 0.22 +1.3
1,315,005 + B158DRAFT_1272 0.32 -0.4
1,315,021 - B158DRAFT_1272 0.34 -0.1
1,315,032 - B158DRAFT_1272 0.36 -0.6
1,315,049 + B158DRAFT_1272 0.39 -1.1
1,315,054 + B158DRAFT_1272 0.40 -1.6
1,315,054 + B158DRAFT_1272 0.40 -0.4
1,315,057 - B158DRAFT_1272 0.40 +0.4
1,315,061 + B158DRAFT_1272 0.41 -0.0
1,315,062 - B158DRAFT_1272 0.41 +0.1
1,315,066 + B158DRAFT_1272 0.41 -0.7
1,315,069 - B158DRAFT_1272 0.42 -1.0
1,315,074 - B158DRAFT_1272 0.43 -0.1
1,315,076 + B158DRAFT_1272 0.43 -0.5
1,315,097 + B158DRAFT_1272 0.46 -0.3
1,315,114 - B158DRAFT_1272 0.49 +0.1
1,315,133 + B158DRAFT_1272 0.52 -0.2
1,315,133 + B158DRAFT_1272 0.52 +0.5
1,315,133 + B158DRAFT_1272 0.52 -0.0
1,315,133 + B158DRAFT_1272 0.52 -0.0
1,315,133 + B158DRAFT_1272 0.52 -0.2
1,315,133 + B158DRAFT_1272 0.52 +2.4
1,315,133 + B158DRAFT_1272 0.52 +1.4
1,315,141 - B158DRAFT_1272 0.53 -0.6
1,315,141 - B158DRAFT_1272 0.53 -0.1
1,315,141 - B158DRAFT_1272 0.53 -0.4
1,315,141 - B158DRAFT_1272 0.53 -0.7
1,315,141 - B158DRAFT_1272 0.53 +0.3
1,315,141 - B158DRAFT_1272 0.53 +0.1
1,315,174 - B158DRAFT_1272 0.58 +0.0
1,315,296 + B158DRAFT_1272 0.77 -0.3
1,315,319 + B158DRAFT_1272 0.81 -0.6
1,315,351 - B158DRAFT_1272 0.86 -0.9
1,315,440 + -0.1
1,315,450 + -0.3
1,315,458 + +0.0
1,315,458 - -1.1
1,315,458 - -0.0
1,315,458 - -0.7
1,315,464 - +0.5
1,315,464 - -0.4
1,315,482 - +0.1
1,315,575 - +0.3
1,315,644 + +0.2
1,315,689 - B158DRAFT_1273 0.12 +0.3

Or see this region's nucleotide sequence