Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1025

Experiment: m.b. Doxycycline hyclate 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1023 and B158DRAFT_1024 are separated by 118 nucleotidesB158DRAFT_1024 and B158DRAFT_1025 are separated by 28 nucleotidesB158DRAFT_1025 and B158DRAFT_1026 are separated by 19 nucleotidesB158DRAFT_1026 and B158DRAFT_1027 are separated by 28 nucleotides B158DRAFT_1023: B158DRAFT_1023 - Helix-turn-helix., at 1,064,338 to 1,065,081 _1023 B158DRAFT_1024: B158DRAFT_1024 - Phosphatidylglycerophosphate synthase, at 1,065,200 to 1,065,790 _1024 B158DRAFT_1025: B158DRAFT_1025 - Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase, at 1,065,819 to 1,066,778 _1025 B158DRAFT_1026: B158DRAFT_1026 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 1,066,798 to 1,067,439 _1026 B158DRAFT_1027: B158DRAFT_1027 - Predicted membrane protein, at 1,067,468 to 1,068,007 _1027 Position (kb) 1065 1066 1067Strain fitness (log2 ratio) -2 -1 0 1at 1064.915 kb on + strand, within B158DRAFT_1023at 1064.996 kb on + strand, within B158DRAFT_1023at 1064.996 kb on + strand, within B158DRAFT_1023at 1064.996 kb on + strand, within B158DRAFT_1023at 1064.996 kb on + strand, within B158DRAFT_1023at 1064.997 kb on - strand, within B158DRAFT_1023at 1064.997 kb on - strand, within B158DRAFT_1023at 1065.004 kb on - strand, within B158DRAFT_1023at 1065.004 kb on - strand, within B158DRAFT_1023at 1065.004 kb on - strand, within B158DRAFT_1023at 1065.004 kb on - strand, within B158DRAFT_1023at 1065.006 kb on + strand, within B158DRAFT_1023at 1065.029 kb on + strandat 1065.037 kb on - strandat 1065.287 kb on + strand, within B158DRAFT_1024at 1065.287 kb on + strand, within B158DRAFT_1024at 1065.290 kb on - strand, within B158DRAFT_1024at 1065.290 kb on - strand, within B158DRAFT_1024at 1065.329 kb on + strand, within B158DRAFT_1024at 1065.330 kb on + strand, within B158DRAFT_1024at 1065.330 kb on - strand, within B158DRAFT_1024at 1065.349 kb on - strand, within B158DRAFT_1024at 1065.401 kb on + strand, within B158DRAFT_1024at 1065.401 kb on + strand, within B158DRAFT_1024at 1065.409 kb on - strand, within B158DRAFT_1024at 1065.425 kb on - strand, within B158DRAFT_1024at 1065.447 kb on + strand, within B158DRAFT_1024at 1065.489 kb on + strand, within B158DRAFT_1024at 1065.532 kb on + strand, within B158DRAFT_1024at 1065.544 kb on + strand, within B158DRAFT_1024at 1065.608 kb on - strand, within B158DRAFT_1024at 1065.613 kb on + strand, within B158DRAFT_1024at 1065.648 kb on - strand, within B158DRAFT_1024at 1065.728 kb on - strand, within B158DRAFT_1024at 1065.785 kb on - strandat 1065.904 kb on + strandat 1065.943 kb on - strand, within B158DRAFT_1025at 1065.943 kb on - strand, within B158DRAFT_1025at 1065.943 kb on - strand, within B158DRAFT_1025at 1065.945 kb on + strand, within B158DRAFT_1025at 1065.945 kb on + strand, within B158DRAFT_1025at 1065.946 kb on + strand, within B158DRAFT_1025at 1065.946 kb on + strand, within B158DRAFT_1025at 1065.947 kb on + strand, within B158DRAFT_1025at 1065.954 kb on - strand, within B158DRAFT_1025at 1065.954 kb on - strand, within B158DRAFT_1025at 1065.959 kb on + strand, within B158DRAFT_1025at 1065.987 kb on - strand, within B158DRAFT_1025at 1065.996 kb on + strand, within B158DRAFT_1025at 1066.014 kb on - strand, within B158DRAFT_1025at 1066.014 kb on - strand, within B158DRAFT_1025at 1066.020 kb on - strand, within B158DRAFT_1025at 1066.026 kb on + strand, within B158DRAFT_1025at 1066.107 kb on + strand, within B158DRAFT_1025at 1066.107 kb on + strand, within B158DRAFT_1025at 1066.112 kb on + strand, within B158DRAFT_1025at 1066.112 kb on + strand, within B158DRAFT_1025at 1066.112 kb on + strand, within B158DRAFT_1025at 1066.113 kb on - strand, within B158DRAFT_1025at 1066.120 kb on - strand, within B158DRAFT_1025at 1066.120 kb on - strand, within B158DRAFT_1025at 1066.194 kb on + strand, within B158DRAFT_1025at 1066.201 kb on - strand, within B158DRAFT_1025at 1066.202 kb on - strand, within B158DRAFT_1025at 1066.227 kb on + strand, within B158DRAFT_1025at 1066.227 kb on + strand, within B158DRAFT_1025at 1066.265 kb on + strand, within B158DRAFT_1025at 1066.273 kb on - strand, within B158DRAFT_1025at 1066.289 kb on - strand, within B158DRAFT_1025at 1066.323 kb on + strand, within B158DRAFT_1025at 1066.331 kb on - strand, within B158DRAFT_1025at 1066.365 kb on - strand, within B158DRAFT_1025at 1066.383 kb on + strand, within B158DRAFT_1025at 1066.383 kb on + strand, within B158DRAFT_1025at 1066.399 kb on - strand, within B158DRAFT_1025at 1066.404 kb on - strand, within B158DRAFT_1025at 1066.415 kb on + strand, within B158DRAFT_1025at 1066.436 kb on - strand, within B158DRAFT_1025at 1066.491 kb on - strand, within B158DRAFT_1025at 1066.503 kb on + strand, within B158DRAFT_1025at 1066.518 kb on + strand, within B158DRAFT_1025at 1066.550 kb on + strand, within B158DRAFT_1025at 1066.559 kb on - strand, within B158DRAFT_1025at 1066.564 kb on + strand, within B158DRAFT_1025at 1066.564 kb on + strand, within B158DRAFT_1025at 1066.564 kb on + strand, within B158DRAFT_1025at 1066.564 kb on + strand, within B158DRAFT_1025at 1066.582 kb on - strand, within B158DRAFT_1025at 1066.596 kb on + strand, within B158DRAFT_1025at 1066.610 kb on - strand, within B158DRAFT_1025at 1066.682 kb on + strand, within B158DRAFT_1025at 1066.687 kb on + strandat 1066.704 kb on + strandat 1066.721 kb on - strandat 1066.721 kb on - strandat 1066.721 kb on - strandat 1066.730 kb on - strandat 1066.824 kb on - strandat 1066.887 kb on + strand, within B158DRAFT_1026at 1066.908 kb on + strand, within B158DRAFT_1026at 1066.916 kb on - strand, within B158DRAFT_1026at 1066.918 kb on + strand, within B158DRAFT_1026at 1066.918 kb on + strand, within B158DRAFT_1026at 1066.918 kb on + strand, within B158DRAFT_1026at 1066.918 kb on + strand, within B158DRAFT_1026at 1066.918 kb on + strand, within B158DRAFT_1026at 1066.918 kb on + strand, within B158DRAFT_1026at 1066.918 kb on + strand, within B158DRAFT_1026at 1066.926 kb on - strand, within B158DRAFT_1026at 1066.926 kb on - strand, within B158DRAFT_1026at 1066.926 kb on - strand, within B158DRAFT_1026at 1066.926 kb on - strand, within B158DRAFT_1026at 1066.926 kb on - strand, within B158DRAFT_1026at 1066.926 kb on - strand, within B158DRAFT_1026at 1066.926 kb on - strand, within B158DRAFT_1026at 1066.926 kb on - strand, within B158DRAFT_1026at 1066.935 kb on + strand, within B158DRAFT_1026at 1066.935 kb on + strand, within B158DRAFT_1026at 1066.943 kb on - strand, within B158DRAFT_1026at 1066.953 kb on - strand, within B158DRAFT_1026at 1066.995 kb on - strand, within B158DRAFT_1026at 1066.995 kb on - strand, within B158DRAFT_1026at 1067.117 kb on + strand, within B158DRAFT_1026at 1067.117 kb on + strand, within B158DRAFT_1026at 1067.117 kb on + strand, within B158DRAFT_1026at 1067.125 kb on - strand, within B158DRAFT_1026at 1067.137 kb on + strand, within B158DRAFT_1026at 1067.137 kb on + strand, within B158DRAFT_1026at 1067.138 kb on + strand, within B158DRAFT_1026at 1067.283 kb on + strand, within B158DRAFT_1026at 1067.295 kb on + strand, within B158DRAFT_1026at 1067.295 kb on + strand, within B158DRAFT_1026at 1067.303 kb on - strand, within B158DRAFT_1026at 1067.358 kb on - strand, within B158DRAFT_1026at 1067.366 kb on - strand, within B158DRAFT_1026at 1067.382 kb on + strandat 1067.382 kb on + strandat 1067.411 kb on - strandat 1067.442 kb on - strandat 1067.442 kb on - strandat 1067.537 kb on + strand, within B158DRAFT_1027at 1067.575 kb on + strand, within B158DRAFT_1027at 1067.612 kb on + strand, within B158DRAFT_1027at 1067.620 kb on - strand, within B158DRAFT_1027at 1067.637 kb on + strand, within B158DRAFT_1027at 1067.645 kb on - strand, within B158DRAFT_1027at 1067.645 kb on - strand, within B158DRAFT_1027at 1067.663 kb on + strand, within B158DRAFT_1027at 1067.663 kb on + strand, within B158DRAFT_1027at 1067.671 kb on - strand, within B158DRAFT_1027at 1067.671 kb on - strand, within B158DRAFT_1027at 1067.674 kb on + strand, within B158DRAFT_1027at 1067.674 kb on + strand, within B158DRAFT_1027at 1067.682 kb on - strand, within B158DRAFT_1027at 1067.725 kb on - strand, within B158DRAFT_1027

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.03125 mg/ml
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1,064,915 + B158DRAFT_1023 0.78 -0.1
1,064,996 + B158DRAFT_1023 0.88 -0.1
1,064,996 + B158DRAFT_1023 0.88 +0.7
1,064,996 + B158DRAFT_1023 0.88 +0.0
1,064,996 + B158DRAFT_1023 0.88 -1.4
1,064,997 - B158DRAFT_1023 0.89 -0.3
1,064,997 - B158DRAFT_1023 0.89 -0.7
1,065,004 - B158DRAFT_1023 0.90 +0.0
1,065,004 - B158DRAFT_1023 0.90 +0.4
1,065,004 - B158DRAFT_1023 0.90 +0.6
1,065,004 - B158DRAFT_1023 0.90 -0.2
1,065,006 + B158DRAFT_1023 0.90 +0.0
1,065,029 + +0.0
1,065,037 - -0.1
1,065,287 + B158DRAFT_1024 0.15 -0.9
1,065,287 + B158DRAFT_1024 0.15 +0.0
1,065,290 - B158DRAFT_1024 0.15 -0.3
1,065,290 - B158DRAFT_1024 0.15 +0.3
1,065,329 + B158DRAFT_1024 0.22 -0.7
1,065,330 + B158DRAFT_1024 0.22 +0.1
1,065,330 - B158DRAFT_1024 0.22 -0.1
1,065,349 - B158DRAFT_1024 0.25 -0.4
1,065,401 + B158DRAFT_1024 0.34 +0.0
1,065,401 + B158DRAFT_1024 0.34 +0.0
1,065,409 - B158DRAFT_1024 0.35 +0.2
1,065,425 - B158DRAFT_1024 0.38 +0.2
1,065,447 + B158DRAFT_1024 0.42 -1.2
1,065,489 + B158DRAFT_1024 0.49 +0.1
1,065,532 + B158DRAFT_1024 0.56 -0.1
1,065,544 + B158DRAFT_1024 0.58 +0.4
1,065,608 - B158DRAFT_1024 0.69 -0.2
1,065,613 + B158DRAFT_1024 0.70 +1.0
1,065,648 - B158DRAFT_1024 0.76 -0.1
1,065,728 - B158DRAFT_1024 0.89 -0.9
1,065,785 - -0.5
1,065,904 + +0.0
1,065,943 - B158DRAFT_1025 0.13 +0.6
1,065,943 - B158DRAFT_1025 0.13 -0.8
1,065,943 - B158DRAFT_1025 0.13 -0.8
1,065,945 + B158DRAFT_1025 0.13 +0.2
1,065,945 + B158DRAFT_1025 0.13 -0.0
1,065,946 + B158DRAFT_1025 0.13 -1.4
1,065,946 + B158DRAFT_1025 0.13 -0.4
1,065,947 + B158DRAFT_1025 0.13 +0.8
1,065,954 - B158DRAFT_1025 0.14 +0.0
1,065,954 - B158DRAFT_1025 0.14 -0.4
1,065,959 + B158DRAFT_1025 0.15 -0.1
1,065,987 - B158DRAFT_1025 0.17 -0.5
1,065,996 + B158DRAFT_1025 0.18 -0.7
1,066,014 - B158DRAFT_1025 0.20 -1.7
1,066,014 - B158DRAFT_1025 0.20 +0.1
1,066,020 - B158DRAFT_1025 0.21 -0.1
1,066,026 + B158DRAFT_1025 0.22 +0.2
1,066,107 + B158DRAFT_1025 0.30 +1.3
1,066,107 + B158DRAFT_1025 0.30 -0.6
1,066,112 + B158DRAFT_1025 0.31 -1.5
1,066,112 + B158DRAFT_1025 0.31 +0.1
1,066,112 + B158DRAFT_1025 0.31 -0.3
1,066,113 - B158DRAFT_1025 0.31 -0.3
1,066,120 - B158DRAFT_1025 0.31 -0.1
1,066,120 - B158DRAFT_1025 0.31 -1.2
1,066,194 + B158DRAFT_1025 0.39 +0.0
1,066,201 - B158DRAFT_1025 0.40 -1.5
1,066,202 - B158DRAFT_1025 0.40 -0.3
1,066,227 + B158DRAFT_1025 0.42 +0.1
1,066,227 + B158DRAFT_1025 0.42 -0.2
1,066,265 + B158DRAFT_1025 0.46 +0.1
1,066,273 - B158DRAFT_1025 0.47 -0.1
1,066,289 - B158DRAFT_1025 0.49 -0.1
1,066,323 + B158DRAFT_1025 0.53 -0.2
1,066,331 - B158DRAFT_1025 0.53 +0.3
1,066,365 - B158DRAFT_1025 0.57 -1.0
1,066,383 + B158DRAFT_1025 0.59 -0.1
1,066,383 + B158DRAFT_1025 0.59 -0.0
1,066,399 - B158DRAFT_1025 0.60 -0.5
1,066,404 - B158DRAFT_1025 0.61 -0.2
1,066,415 + B158DRAFT_1025 0.62 +0.5
1,066,436 - B158DRAFT_1025 0.64 +0.2
1,066,491 - B158DRAFT_1025 0.70 +0.1
1,066,503 + B158DRAFT_1025 0.71 -0.0
1,066,518 + B158DRAFT_1025 0.73 -0.7
1,066,550 + B158DRAFT_1025 0.76 -1.0
1,066,559 - B158DRAFT_1025 0.77 -0.2
1,066,564 + B158DRAFT_1025 0.78 -0.4
1,066,564 + B158DRAFT_1025 0.78 -1.1
1,066,564 + B158DRAFT_1025 0.78 -2.3
1,066,564 + B158DRAFT_1025 0.78 +0.7
1,066,582 - B158DRAFT_1025 0.79 -1.0
1,066,596 + B158DRAFT_1025 0.81 -1.2
1,066,610 - B158DRAFT_1025 0.82 -1.1
1,066,682 + B158DRAFT_1025 0.90 -0.6
1,066,687 + +0.5
1,066,704 + +0.0
1,066,721 - +0.3
1,066,721 - -0.3
1,066,721 - -0.3
1,066,730 - +0.0
1,066,824 - -0.4
1,066,887 + B158DRAFT_1026 0.14 +0.1
1,066,908 + B158DRAFT_1026 0.17 -0.2
1,066,916 - B158DRAFT_1026 0.18 +0.0
1,066,918 + B158DRAFT_1026 0.19 +0.6
1,066,918 + B158DRAFT_1026 0.19 +0.0
1,066,918 + B158DRAFT_1026 0.19 -0.1
1,066,918 + B158DRAFT_1026 0.19 +0.3
1,066,918 + B158DRAFT_1026 0.19 -0.2
1,066,918 + B158DRAFT_1026 0.19 +0.0
1,066,918 + B158DRAFT_1026 0.19 -0.5
1,066,926 - B158DRAFT_1026 0.20 -0.6
1,066,926 - B158DRAFT_1026 0.20 -0.7
1,066,926 - B158DRAFT_1026 0.20 +0.1
1,066,926 - B158DRAFT_1026 0.20 +0.2
1,066,926 - B158DRAFT_1026 0.20 -0.3
1,066,926 - B158DRAFT_1026 0.20 +0.6
1,066,926 - B158DRAFT_1026 0.20 -0.5
1,066,926 - B158DRAFT_1026 0.20 -0.2
1,066,935 + B158DRAFT_1026 0.21 -0.1
1,066,935 + B158DRAFT_1026 0.21 +0.3
1,066,943 - B158DRAFT_1026 0.23 +0.1
1,066,953 - B158DRAFT_1026 0.24 +0.1
1,066,995 - B158DRAFT_1026 0.31 -0.4
1,066,995 - B158DRAFT_1026 0.31 +0.8
1,067,117 + B158DRAFT_1026 0.50 +0.1
1,067,117 + B158DRAFT_1026 0.50 +0.7
1,067,117 + B158DRAFT_1026 0.50 -0.1
1,067,125 - B158DRAFT_1026 0.51 -0.5
1,067,137 + B158DRAFT_1026 0.53 -0.6
1,067,137 + B158DRAFT_1026 0.53 -0.6
1,067,138 + B158DRAFT_1026 0.53 +1.4
1,067,283 + B158DRAFT_1026 0.76 +0.5
1,067,295 + B158DRAFT_1026 0.77 -0.4
1,067,295 + B158DRAFT_1026 0.77 -0.4
1,067,303 - B158DRAFT_1026 0.79 +0.3
1,067,358 - B158DRAFT_1026 0.87 +0.1
1,067,366 - B158DRAFT_1026 0.88 -0.5
1,067,382 + +0.4
1,067,382 + -0.6
1,067,411 - -0.2
1,067,442 - -0.1
1,067,442 - +0.4
1,067,537 + B158DRAFT_1027 0.13 -0.2
1,067,575 + B158DRAFT_1027 0.20 -0.3
1,067,612 + B158DRAFT_1027 0.27 -0.7
1,067,620 - B158DRAFT_1027 0.28 +0.7
1,067,637 + B158DRAFT_1027 0.31 -0.3
1,067,645 - B158DRAFT_1027 0.33 +0.1
1,067,645 - B158DRAFT_1027 0.33 -0.2
1,067,663 + B158DRAFT_1027 0.36 -0.1
1,067,663 + B158DRAFT_1027 0.36 -0.6
1,067,671 - B158DRAFT_1027 0.38 -0.0
1,067,671 - B158DRAFT_1027 0.38 -0.3
1,067,674 + B158DRAFT_1027 0.38 -0.2
1,067,674 + B158DRAFT_1027 0.38 +0.7
1,067,682 - B158DRAFT_1027 0.40 -0.5
1,067,725 - B158DRAFT_1027 0.48 +0.0

Or see this region's nucleotide sequence