Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1017

Experiment: m.b. Doxycycline hyclate 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1015 and B158DRAFT_1016 are separated by 28 nucleotidesB158DRAFT_1016 and B158DRAFT_1017 are separated by 196 nucleotidesB158DRAFT_1017 and B158DRAFT_1018 are separated by 19 nucleotidesB158DRAFT_1018 and B158DRAFT_1019 overlap by 4 nucleotides B158DRAFT_1015: B158DRAFT_1015 - Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA, at 1,056,924 to 1,057,568 _1015 B158DRAFT_1016: B158DRAFT_1016 - Peptidase E, at 1,057,597 to 1,058,319 _1016 B158DRAFT_1017: B158DRAFT_1017 - hypothetical protein, at 1,058,516 to 1,060,048 _1017 B158DRAFT_1018: B158DRAFT_1018 - Uncharacterized protein conserved in bacteria, at 1,060,068 to 1,060,634 _1018 B158DRAFT_1019: B158DRAFT_1019 - hypothetical protein, at 1,060,631 to 1,061,347 _1019 Position (kb) 1058 1059 1060 1061Strain fitness (log2 ratio) -2 -1 0 1at 1057.549 kb on + strandat 1057.591 kb on + strandat 1057.599 kb on - strandat 1057.656 kb on - strandat 1057.661 kb on + strandat 1057.669 kb on - strandat 1057.677 kb on + strand, within B158DRAFT_1016at 1057.738 kb on + strand, within B158DRAFT_1016at 1057.739 kb on + strand, within B158DRAFT_1016at 1057.749 kb on + strand, within B158DRAFT_1016at 1057.759 kb on - strand, within B158DRAFT_1016at 1057.844 kb on - strand, within B158DRAFT_1016at 1057.914 kb on + strand, within B158DRAFT_1016at 1057.914 kb on + strand, within B158DRAFT_1016at 1057.958 kb on + strand, within B158DRAFT_1016at 1057.981 kb on + strand, within B158DRAFT_1016at 1057.989 kb on - strand, within B158DRAFT_1016at 1058.032 kb on + strand, within B158DRAFT_1016at 1058.046 kb on + strand, within B158DRAFT_1016at 1058.054 kb on - strand, within B158DRAFT_1016at 1058.085 kb on + strand, within B158DRAFT_1016at 1058.093 kb on - strand, within B158DRAFT_1016at 1058.257 kb on - strandat 1058.266 kb on + strandat 1058.282 kb on - strandat 1058.298 kb on - strandat 1058.345 kb on + strandat 1058.416 kb on + strandat 1058.421 kb on + strandat 1058.497 kb on + strandat 1058.505 kb on - strandat 1058.526 kb on + strandat 1058.526 kb on + strandat 1058.526 kb on + strandat 1058.526 kb on + strandat 1058.534 kb on - strandat 1058.534 kb on - strandat 1058.553 kb on + strandat 1058.558 kb on + strandat 1058.563 kb on + strandat 1058.566 kb on - strandat 1058.566 kb on - strandat 1058.571 kb on - strandat 1058.681 kb on - strand, within B158DRAFT_1017at 1058.697 kb on + strand, within B158DRAFT_1017at 1058.712 kb on + strand, within B158DRAFT_1017at 1058.720 kb on + strand, within B158DRAFT_1017at 1058.720 kb on - strand, within B158DRAFT_1017at 1058.720 kb on - strand, within B158DRAFT_1017at 1058.720 kb on - strand, within B158DRAFT_1017at 1058.722 kb on + strand, within B158DRAFT_1017at 1058.725 kb on - strand, within B158DRAFT_1017at 1058.748 kb on - strand, within B158DRAFT_1017at 1058.748 kb on - strand, within B158DRAFT_1017at 1058.748 kb on - strand, within B158DRAFT_1017at 1058.748 kb on - strand, within B158DRAFT_1017at 1058.748 kb on - strand, within B158DRAFT_1017at 1058.776 kb on - strand, within B158DRAFT_1017at 1058.803 kb on + strand, within B158DRAFT_1017at 1058.811 kb on - strand, within B158DRAFT_1017at 1058.811 kb on - strand, within B158DRAFT_1017at 1058.819 kb on - strand, within B158DRAFT_1017at 1058.927 kb on - strand, within B158DRAFT_1017at 1058.927 kb on - strand, within B158DRAFT_1017at 1058.968 kb on + strand, within B158DRAFT_1017at 1058.968 kb on + strand, within B158DRAFT_1017at 1058.976 kb on - strand, within B158DRAFT_1017at 1058.976 kb on - strand, within B158DRAFT_1017at 1058.997 kb on + strand, within B158DRAFT_1017at 1058.997 kb on + strand, within B158DRAFT_1017at 1059.008 kb on + strand, within B158DRAFT_1017at 1059.036 kb on - strand, within B158DRAFT_1017at 1059.036 kb on - strand, within B158DRAFT_1017at 1059.036 kb on - strand, within B158DRAFT_1017at 1059.036 kb on - strand, within B158DRAFT_1017at 1059.036 kb on - strand, within B158DRAFT_1017at 1059.045 kb on + strand, within B158DRAFT_1017at 1059.045 kb on + strand, within B158DRAFT_1017at 1059.045 kb on + strand, within B158DRAFT_1017at 1059.053 kb on - strand, within B158DRAFT_1017at 1059.053 kb on - strand, within B158DRAFT_1017at 1059.053 kb on - strand, within B158DRAFT_1017at 1059.100 kb on - strand, within B158DRAFT_1017at 1059.107 kb on - strand, within B158DRAFT_1017at 1059.109 kb on + strand, within B158DRAFT_1017at 1059.128 kb on - strand, within B158DRAFT_1017at 1059.173 kb on + strand, within B158DRAFT_1017at 1059.173 kb on + strand, within B158DRAFT_1017at 1059.203 kb on - strand, within B158DRAFT_1017at 1059.214 kb on - strand, within B158DRAFT_1017at 1059.222 kb on - strand, within B158DRAFT_1017at 1059.224 kb on + strand, within B158DRAFT_1017at 1059.272 kb on - strand, within B158DRAFT_1017at 1059.339 kb on + strand, within B158DRAFT_1017at 1059.345 kb on + strand, within B158DRAFT_1017at 1059.353 kb on - strand, within B158DRAFT_1017at 1059.356 kb on + strand, within B158DRAFT_1017at 1059.356 kb on + strand, within B158DRAFT_1017at 1059.356 kb on + strand, within B158DRAFT_1017at 1059.356 kb on + strand, within B158DRAFT_1017at 1059.356 kb on + strand, within B158DRAFT_1017at 1059.364 kb on - strand, within B158DRAFT_1017at 1059.364 kb on - strand, within B158DRAFT_1017at 1059.364 kb on - strand, within B158DRAFT_1017at 1059.364 kb on - strand, within B158DRAFT_1017at 1059.364 kb on - strand, within B158DRAFT_1017at 1059.364 kb on - strand, within B158DRAFT_1017at 1059.364 kb on - strand, within B158DRAFT_1017at 1059.364 kb on - strand, within B158DRAFT_1017at 1059.403 kb on + strand, within B158DRAFT_1017at 1059.403 kb on - strand, within B158DRAFT_1017at 1059.412 kb on - strand, within B158DRAFT_1017at 1059.474 kb on - strand, within B158DRAFT_1017at 1059.487 kb on + strand, within B158DRAFT_1017at 1059.490 kb on - strand, within B158DRAFT_1017at 1059.495 kb on - strand, within B158DRAFT_1017at 1059.505 kb on + strand, within B158DRAFT_1017at 1059.537 kb on - strand, within B158DRAFT_1017at 1059.548 kb on + strand, within B158DRAFT_1017at 1059.602 kb on - strand, within B158DRAFT_1017at 1059.615 kb on - strand, within B158DRAFT_1017at 1059.622 kb on - strand, within B158DRAFT_1017at 1059.629 kb on + strand, within B158DRAFT_1017at 1059.634 kb on + strand, within B158DRAFT_1017at 1059.637 kb on - strand, within B158DRAFT_1017at 1059.637 kb on - strand, within B158DRAFT_1017at 1059.703 kb on + strand, within B158DRAFT_1017at 1059.716 kb on + strand, within B158DRAFT_1017at 1059.724 kb on - strand, within B158DRAFT_1017at 1059.724 kb on - strand, within B158DRAFT_1017at 1059.755 kb on + strand, within B158DRAFT_1017at 1059.763 kb on - strand, within B158DRAFT_1017at 1059.793 kb on + strand, within B158DRAFT_1017at 1059.801 kb on - strand, within B158DRAFT_1017at 1059.809 kb on - strand, within B158DRAFT_1017at 1059.843 kb on + strand, within B158DRAFT_1017at 1059.908 kb on + strandat 1059.938 kb on + strandat 1059.946 kb on - strandat 1059.951 kb on - strandat 1059.951 kb on - strandat 1059.994 kb on + strandat 1060.002 kb on - strandat 1060.095 kb on + strandat 1060.095 kb on + strandat 1060.095 kb on + strandat 1060.095 kb on + strandat 1060.095 kb on + strandat 1060.103 kb on - strandat 1060.103 kb on - strandat 1060.103 kb on - strandat 1060.103 kb on - strandat 1060.103 kb on - strandat 1060.123 kb on + strandat 1060.123 kb on + strandat 1060.133 kb on + strand, within B158DRAFT_1018at 1060.141 kb on - strand, within B158DRAFT_1018at 1060.266 kb on + strand, within B158DRAFT_1018at 1060.293 kb on - strand, within B158DRAFT_1018at 1060.343 kb on + strand, within B158DRAFT_1018at 1060.358 kb on - strand, within B158DRAFT_1018at 1060.358 kb on - strand, within B158DRAFT_1018at 1060.360 kb on + strand, within B158DRAFT_1018at 1060.360 kb on + strand, within B158DRAFT_1018at 1060.368 kb on - strand, within B158DRAFT_1018at 1060.368 kb on - strand, within B158DRAFT_1018at 1060.368 kb on - strand, within B158DRAFT_1018at 1060.368 kb on - strand, within B158DRAFT_1018at 1060.457 kb on - strand, within B158DRAFT_1018at 1060.457 kb on - strand, within B158DRAFT_1018at 1060.523 kb on + strand, within B158DRAFT_1018at 1060.582 kb on - strandat 1060.592 kb on - strandat 1060.671 kb on - strandat 1060.772 kb on + strand, within B158DRAFT_1019at 1060.778 kb on + strand, within B158DRAFT_1019at 1060.888 kb on + strand, within B158DRAFT_1019at 1060.942 kb on + strand, within B158DRAFT_1019

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.03125 mg/ml
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1,057,549 + -0.4
1,057,591 + -0.2
1,057,599 - -0.1
1,057,656 - -0.2
1,057,661 + -0.9
1,057,669 - +0.3
1,057,677 + B158DRAFT_1016 0.11 -0.6
1,057,738 + B158DRAFT_1016 0.20 -0.7
1,057,739 + B158DRAFT_1016 0.20 -0.7
1,057,749 + B158DRAFT_1016 0.21 +0.2
1,057,759 - B158DRAFT_1016 0.22 -0.2
1,057,844 - B158DRAFT_1016 0.34 -0.2
1,057,914 + B158DRAFT_1016 0.44 -0.3
1,057,914 + B158DRAFT_1016 0.44 -0.4
1,057,958 + B158DRAFT_1016 0.50 -0.6
1,057,981 + B158DRAFT_1016 0.53 +0.5
1,057,989 - B158DRAFT_1016 0.54 -0.2
1,058,032 + B158DRAFT_1016 0.60 +0.4
1,058,046 + B158DRAFT_1016 0.62 +0.1
1,058,054 - B158DRAFT_1016 0.63 -0.3
1,058,085 + B158DRAFT_1016 0.67 +0.3
1,058,093 - B158DRAFT_1016 0.69 -0.2
1,058,257 - -0.3
1,058,266 + -0.2
1,058,282 - -1.0
1,058,298 - -0.8
1,058,345 + -0.1
1,058,416 + -0.8
1,058,421 + +0.2
1,058,497 + +0.9
1,058,505 - -0.7
1,058,526 + -0.5
1,058,526 + -0.3
1,058,526 + +0.4
1,058,526 + -0.0
1,058,534 - +0.1
1,058,534 - +0.5
1,058,553 + -0.2
1,058,558 + +0.1
1,058,563 + -0.4
1,058,566 - +0.2
1,058,566 - +0.0
1,058,571 - -0.2
1,058,681 - B158DRAFT_1017 0.11 -0.1
1,058,697 + B158DRAFT_1017 0.12 -0.3
1,058,712 + B158DRAFT_1017 0.13 +0.3
1,058,720 + B158DRAFT_1017 0.13 +0.0
1,058,720 - B158DRAFT_1017 0.13 -0.5
1,058,720 - B158DRAFT_1017 0.13 -0.7
1,058,720 - B158DRAFT_1017 0.13 -0.4
1,058,722 + B158DRAFT_1017 0.13 -2.4
1,058,725 - B158DRAFT_1017 0.14 +0.5
1,058,748 - B158DRAFT_1017 0.15 -1.2
1,058,748 - B158DRAFT_1017 0.15 -0.0
1,058,748 - B158DRAFT_1017 0.15 -0.4
1,058,748 - B158DRAFT_1017 0.15 -0.1
1,058,748 - B158DRAFT_1017 0.15 -0.1
1,058,776 - B158DRAFT_1017 0.17 +0.3
1,058,803 + B158DRAFT_1017 0.19 +0.4
1,058,811 - B158DRAFT_1017 0.19 -0.1
1,058,811 - B158DRAFT_1017 0.19 +0.3
1,058,819 - B158DRAFT_1017 0.20 -0.6
1,058,927 - B158DRAFT_1017 0.27 -0.3
1,058,927 - B158DRAFT_1017 0.27 -0.2
1,058,968 + B158DRAFT_1017 0.29 -0.3
1,058,968 + B158DRAFT_1017 0.29 +0.1
1,058,976 - B158DRAFT_1017 0.30 +0.1
1,058,976 - B158DRAFT_1017 0.30 +0.0
1,058,997 + B158DRAFT_1017 0.31 -0.5
1,058,997 + B158DRAFT_1017 0.31 -0.1
1,059,008 + B158DRAFT_1017 0.32 -0.7
1,059,036 - B158DRAFT_1017 0.34 -0.1
1,059,036 - B158DRAFT_1017 0.34 -0.2
1,059,036 - B158DRAFT_1017 0.34 -0.6
1,059,036 - B158DRAFT_1017 0.34 +0.9
1,059,036 - B158DRAFT_1017 0.34 +0.1
1,059,045 + B158DRAFT_1017 0.35 -0.3
1,059,045 + B158DRAFT_1017 0.35 -0.1
1,059,045 + B158DRAFT_1017 0.35 +0.1
1,059,053 - B158DRAFT_1017 0.35 -0.1
1,059,053 - B158DRAFT_1017 0.35 -0.9
1,059,053 - B158DRAFT_1017 0.35 -0.3
1,059,100 - B158DRAFT_1017 0.38 +0.2
1,059,107 - B158DRAFT_1017 0.39 -0.4
1,059,109 + B158DRAFT_1017 0.39 -0.6
1,059,128 - B158DRAFT_1017 0.40 -0.9
1,059,173 + B158DRAFT_1017 0.43 -0.4
1,059,173 + B158DRAFT_1017 0.43 -0.3
1,059,203 - B158DRAFT_1017 0.45 -0.3
1,059,214 - B158DRAFT_1017 0.46 +0.2
1,059,222 - B158DRAFT_1017 0.46 +0.2
1,059,224 + B158DRAFT_1017 0.46 -0.4
1,059,272 - B158DRAFT_1017 0.49 -1.0
1,059,339 + B158DRAFT_1017 0.54 +0.1
1,059,345 + B158DRAFT_1017 0.54 -0.5
1,059,353 - B158DRAFT_1017 0.55 -0.5
1,059,356 + B158DRAFT_1017 0.55 -0.3
1,059,356 + B158DRAFT_1017 0.55 +0.2
1,059,356 + B158DRAFT_1017 0.55 -0.2
1,059,356 + B158DRAFT_1017 0.55 -0.2
1,059,356 + B158DRAFT_1017 0.55 -0.4
1,059,364 - B158DRAFT_1017 0.55 -0.0
1,059,364 - B158DRAFT_1017 0.55 -0.7
1,059,364 - B158DRAFT_1017 0.55 +0.0
1,059,364 - B158DRAFT_1017 0.55 -0.3
1,059,364 - B158DRAFT_1017 0.55 +0.3
1,059,364 - B158DRAFT_1017 0.55 -0.4
1,059,364 - B158DRAFT_1017 0.55 +0.0
1,059,364 - B158DRAFT_1017 0.55 -0.0
1,059,403 + B158DRAFT_1017 0.58 -0.4
1,059,403 - B158DRAFT_1017 0.58 -0.4
1,059,412 - B158DRAFT_1017 0.58 +0.0
1,059,474 - B158DRAFT_1017 0.62 +0.0
1,059,487 + B158DRAFT_1017 0.63 +0.4
1,059,490 - B158DRAFT_1017 0.64 -0.0
1,059,495 - B158DRAFT_1017 0.64 -0.5
1,059,505 + B158DRAFT_1017 0.65 -0.2
1,059,537 - B158DRAFT_1017 0.67 -0.1
1,059,548 + B158DRAFT_1017 0.67 +0.1
1,059,602 - B158DRAFT_1017 0.71 -1.6
1,059,615 - B158DRAFT_1017 0.72 +0.3
1,059,622 - B158DRAFT_1017 0.72 +0.0
1,059,629 + B158DRAFT_1017 0.73 -0.7
1,059,634 + B158DRAFT_1017 0.73 -0.2
1,059,637 - B158DRAFT_1017 0.73 +0.0
1,059,637 - B158DRAFT_1017 0.73 +0.0
1,059,703 + B158DRAFT_1017 0.77 +0.5
1,059,716 + B158DRAFT_1017 0.78 -0.3
1,059,724 - B158DRAFT_1017 0.79 +0.1
1,059,724 - B158DRAFT_1017 0.79 +0.1
1,059,755 + B158DRAFT_1017 0.81 -0.7
1,059,763 - B158DRAFT_1017 0.81 -2.2
1,059,793 + B158DRAFT_1017 0.83 -1.5
1,059,801 - B158DRAFT_1017 0.84 -0.2
1,059,809 - B158DRAFT_1017 0.84 +0.2
1,059,843 + B158DRAFT_1017 0.87 +0.2
1,059,908 + -0.1
1,059,938 + +0.1
1,059,946 - -0.3
1,059,951 - +0.1
1,059,951 - -0.1
1,059,994 + +0.1
1,060,002 - -0.2
1,060,095 + -0.1
1,060,095 + -0.2
1,060,095 + -0.4
1,060,095 + -0.6
1,060,095 + -0.3
1,060,103 - -0.3
1,060,103 - +0.3
1,060,103 - +0.4
1,060,103 - -0.1
1,060,103 - -0.4
1,060,123 + -0.5
1,060,123 + +0.6
1,060,133 + B158DRAFT_1018 0.11 +0.6
1,060,141 - B158DRAFT_1018 0.13 -0.6
1,060,266 + B158DRAFT_1018 0.35 -0.8
1,060,293 - B158DRAFT_1018 0.40 -0.1
1,060,343 + B158DRAFT_1018 0.49 -0.2
1,060,358 - B158DRAFT_1018 0.51 +0.2
1,060,358 - B158DRAFT_1018 0.51 +0.1
1,060,360 + B158DRAFT_1018 0.51 +0.2
1,060,360 + B158DRAFT_1018 0.51 -0.5
1,060,368 - B158DRAFT_1018 0.53 -0.8
1,060,368 - B158DRAFT_1018 0.53 +0.1
1,060,368 - B158DRAFT_1018 0.53 -0.0
1,060,368 - B158DRAFT_1018 0.53 +0.2
1,060,457 - B158DRAFT_1018 0.69 +0.0
1,060,457 - B158DRAFT_1018 0.69 -1.3
1,060,523 + B158DRAFT_1018 0.80 +0.3
1,060,582 - -0.3
1,060,592 - -1.0
1,060,671 - +0.0
1,060,772 + B158DRAFT_1019 0.20 +0.7
1,060,778 + B158DRAFT_1019 0.21 +0.2
1,060,888 + B158DRAFT_1019 0.36 +0.2
1,060,942 + B158DRAFT_1019 0.43 -0.0

Or see this region's nucleotide sequence