Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0686

Experiment: m.b. Doxycycline hyclate 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0685 and B158DRAFT_0686 overlap by 4 nucleotidesB158DRAFT_0686 and B158DRAFT_0687 are separated by 37 nucleotidesB158DRAFT_0687 and B158DRAFT_0688 are separated by 140 nucleotides B158DRAFT_0685: B158DRAFT_0685 - Signal transduction histidine kinase, at 686,551 to 687,855 _0685 B158DRAFT_0686: B158DRAFT_0686 - Disulfide bond chaperones of the HSP33 family, at 687,852 to 688,724 _0686 B158DRAFT_0687: B158DRAFT_0687 - heat shock protein Hsp15, at 688,762 to 689,148 _0687 B158DRAFT_0688: B158DRAFT_0688 - type II secretion system protein C (GspC), at 689,289 to 690,242 _0688 Position (kb) 687 688 689Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.896 kb on - strand, within B158DRAFT_0685at 686.990 kb on + strand, within B158DRAFT_0685at 687.087 kb on - strand, within B158DRAFT_0685at 687.184 kb on - strand, within B158DRAFT_0685at 687.194 kb on + strand, within B158DRAFT_0685at 687.224 kb on + strand, within B158DRAFT_0685at 687.232 kb on - strand, within B158DRAFT_0685at 687.280 kb on + strand, within B158DRAFT_0685at 687.288 kb on - strand, within B158DRAFT_0685at 687.288 kb on - strand, within B158DRAFT_0685at 687.295 kb on - strand, within B158DRAFT_0685at 687.325 kb on + strand, within B158DRAFT_0685at 687.339 kb on - strand, within B158DRAFT_0685at 687.343 kb on + strand, within B158DRAFT_0685at 687.387 kb on + strand, within B158DRAFT_0685at 687.472 kb on + strand, within B158DRAFT_0685at 687.492 kb on + strand, within B158DRAFT_0685at 687.497 kb on + strand, within B158DRAFT_0685at 687.624 kb on - strand, within B158DRAFT_0685at 687.726 kb on + strandat 687.728 kb on + strandat 687.742 kb on + strandat 687.750 kb on - strandat 687.750 kb on - strandat 687.780 kb on - strandat 687.840 kb on + strandat 687.883 kb on - strandat 687.995 kb on + strand, within B158DRAFT_0686at 687.995 kb on + strand, within B158DRAFT_0686at 687.995 kb on + strand, within B158DRAFT_0686at 688.019 kb on + strand, within B158DRAFT_0686at 688.047 kb on + strand, within B158DRAFT_0686at 688.086 kb on - strand, within B158DRAFT_0686at 688.099 kb on + strand, within B158DRAFT_0686at 688.109 kb on + strand, within B158DRAFT_0686at 688.112 kb on - strand, within B158DRAFT_0686at 688.124 kb on + strand, within B158DRAFT_0686at 688.124 kb on + strand, within B158DRAFT_0686at 688.125 kb on + strand, within B158DRAFT_0686at 688.125 kb on + strand, within B158DRAFT_0686at 688.133 kb on - strand, within B158DRAFT_0686at 688.133 kb on - strand, within B158DRAFT_0686at 688.133 kb on - strand, within B158DRAFT_0686at 688.133 kb on - strand, within B158DRAFT_0686at 688.133 kb on - strand, within B158DRAFT_0686at 688.180 kb on - strand, within B158DRAFT_0686at 688.210 kb on - strand, within B158DRAFT_0686at 688.266 kb on - strand, within B158DRAFT_0686at 688.286 kb on + strand, within B158DRAFT_0686at 688.286 kb on + strand, within B158DRAFT_0686at 688.286 kb on + strand, within B158DRAFT_0686at 688.286 kb on + strand, within B158DRAFT_0686at 688.286 kb on + strand, within B158DRAFT_0686at 688.286 kb on + strand, within B158DRAFT_0686at 688.294 kb on - strand, within B158DRAFT_0686at 688.294 kb on - strand, within B158DRAFT_0686at 688.294 kb on - strand, within B158DRAFT_0686at 688.307 kb on + strand, within B158DRAFT_0686at 688.360 kb on + strand, within B158DRAFT_0686at 688.370 kb on + strand, within B158DRAFT_0686at 688.375 kb on + strand, within B158DRAFT_0686at 688.378 kb on - strand, within B158DRAFT_0686at 688.442 kb on + strand, within B158DRAFT_0686at 688.454 kb on + strand, within B158DRAFT_0686at 688.460 kb on - strand, within B158DRAFT_0686at 688.511 kb on + strand, within B158DRAFT_0686at 688.530 kb on + strand, within B158DRAFT_0686at 688.566 kb on + strand, within B158DRAFT_0686at 688.579 kb on - strand, within B158DRAFT_0686at 688.591 kb on + strand, within B158DRAFT_0686at 688.596 kb on - strand, within B158DRAFT_0686at 688.642 kb on + strandat 688.662 kb on + strandat 688.715 kb on + strandat 688.723 kb on - strandat 688.751 kb on + strandat 688.767 kb on - strandat 688.827 kb on + strand, within B158DRAFT_0687at 688.827 kb on + strand, within B158DRAFT_0687at 688.827 kb on - strand, within B158DRAFT_0687at 688.835 kb on - strand, within B158DRAFT_0687at 688.940 kb on + strand, within B158DRAFT_0687at 688.940 kb on + strand, within B158DRAFT_0687at 688.940 kb on + strand, within B158DRAFT_0687at 688.945 kb on + strand, within B158DRAFT_0687at 688.947 kb on - strand, within B158DRAFT_0687at 688.968 kb on + strand, within B158DRAFT_0687at 689.010 kb on - strand, within B158DRAFT_0687at 689.018 kb on - strand, within B158DRAFT_0687at 689.067 kb on - strand, within B158DRAFT_0687at 689.105 kb on + strand, within B158DRAFT_0687at 689.105 kb on + strand, within B158DRAFT_0687at 689.105 kb on + strand, within B158DRAFT_0687at 689.105 kb on + strand, within B158DRAFT_0687at 689.105 kb on + strand, within B158DRAFT_0687at 689.113 kb on - strandat 689.113 kb on - strandat 689.113 kb on - strandat 689.113 kb on - strandat 689.113 kb on - strandat 689.113 kb on - strandat 689.113 kb on - strandat 689.126 kb on - strandat 689.172 kb on + strandat 689.176 kb on + strandat 689.259 kb on + strandat 689.441 kb on - strand, within B158DRAFT_0688at 689.501 kb on - strand, within B158DRAFT_0688at 689.619 kb on + strand, within B158DRAFT_0688

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.03125 mg/ml
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686,876 + B158DRAFT_0685 0.25 -3.0
686,876 + B158DRAFT_0685 0.25 -3.2
686,876 + B158DRAFT_0685 0.25 -3.7
686,876 + B158DRAFT_0685 0.25 -1.2
686,876 + B158DRAFT_0685 0.25 -3.3
686,876 + B158DRAFT_0685 0.25 -4.3
686,876 + B158DRAFT_0685 0.25 -4.3
686,876 + B158DRAFT_0685 0.25 -5.5
686,876 + B158DRAFT_0685 0.25 -3.9
686,876 + B158DRAFT_0685 0.25 -3.2
686,876 + B158DRAFT_0685 0.25 -3.3
686,884 - B158DRAFT_0685 0.26 -3.8
686,884 - B158DRAFT_0685 0.26 -3.5
686,884 - B158DRAFT_0685 0.26 -3.5
686,884 - B158DRAFT_0685 0.26 -1.2
686,884 - B158DRAFT_0685 0.26 -4.2
686,884 - B158DRAFT_0685 0.26 -3.6
686,884 - B158DRAFT_0685 0.26 -5.8
686,884 - B158DRAFT_0685 0.26 -3.1
686,884 - B158DRAFT_0685 0.26 -3.1
686,884 - B158DRAFT_0685 0.26 -3.4
686,896 - B158DRAFT_0685 0.26 -5.1
686,990 + B158DRAFT_0685 0.34 -3.6
687,087 - B158DRAFT_0685 0.41 -3.6
687,184 - B158DRAFT_0685 0.49 -4.2
687,194 + B158DRAFT_0685 0.49 -3.5
687,224 + B158DRAFT_0685 0.52 -3.4
687,232 - B158DRAFT_0685 0.52 -4.4
687,280 + B158DRAFT_0685 0.56 -2.7
687,288 - B158DRAFT_0685 0.56 -5.3
687,288 - B158DRAFT_0685 0.56 -3.5
687,295 - B158DRAFT_0685 0.57 -3.5
687,325 + B158DRAFT_0685 0.59 -3.3
687,339 - B158DRAFT_0685 0.60 -3.6
687,343 + B158DRAFT_0685 0.61 -1.2
687,387 + B158DRAFT_0685 0.64 -5.5
687,472 + B158DRAFT_0685 0.71 -2.7
687,492 + B158DRAFT_0685 0.72 -4.3
687,497 + B158DRAFT_0685 0.72 -3.6
687,624 - B158DRAFT_0685 0.82 -2.2
687,726 + -2.3
687,728 + -3.9
687,742 + -3.3
687,750 - -2.9
687,750 - -5.0
687,780 - -2.5
687,840 + -0.0
687,883 - -0.1
687,995 + B158DRAFT_0686 0.16 -0.7
687,995 + B158DRAFT_0686 0.16 -0.7
687,995 + B158DRAFT_0686 0.16 -0.2
688,019 + B158DRAFT_0686 0.19 +0.0
688,047 + B158DRAFT_0686 0.22 -0.1
688,086 - B158DRAFT_0686 0.27 -0.6
688,099 + B158DRAFT_0686 0.28 -0.1
688,109 + B158DRAFT_0686 0.29 -0.3
688,112 - B158DRAFT_0686 0.30 +0.2
688,124 + B158DRAFT_0686 0.31 +0.1
688,124 + B158DRAFT_0686 0.31 -0.5
688,125 + B158DRAFT_0686 0.31 +0.1
688,125 + B158DRAFT_0686 0.31 -0.1
688,133 - B158DRAFT_0686 0.32 -0.7
688,133 - B158DRAFT_0686 0.32 -0.2
688,133 - B158DRAFT_0686 0.32 -0.4
688,133 - B158DRAFT_0686 0.32 -0.7
688,133 - B158DRAFT_0686 0.32 -0.0
688,180 - B158DRAFT_0686 0.38 -0.3
688,210 - B158DRAFT_0686 0.41 -0.7
688,266 - B158DRAFT_0686 0.47 -1.0
688,286 + B158DRAFT_0686 0.50 -0.2
688,286 + B158DRAFT_0686 0.50 -0.3
688,286 + B158DRAFT_0686 0.50 -0.2
688,286 + B158DRAFT_0686 0.50 +0.2
688,286 + B158DRAFT_0686 0.50 -1.6
688,286 + B158DRAFT_0686 0.50 +0.1
688,294 - B158DRAFT_0686 0.51 +0.2
688,294 - B158DRAFT_0686 0.51 -1.2
688,294 - B158DRAFT_0686 0.51 -0.8
688,307 + B158DRAFT_0686 0.52 +1.8
688,360 + B158DRAFT_0686 0.58 +0.8
688,370 + B158DRAFT_0686 0.59 -0.0
688,375 + B158DRAFT_0686 0.60 -0.1
688,378 - B158DRAFT_0686 0.60 +0.0
688,442 + B158DRAFT_0686 0.68 -0.3
688,454 + B158DRAFT_0686 0.69 -0.1
688,460 - B158DRAFT_0686 0.70 -0.3
688,511 + B158DRAFT_0686 0.75 +0.0
688,530 + B158DRAFT_0686 0.78 +0.1
688,566 + B158DRAFT_0686 0.82 -0.7
688,579 - B158DRAFT_0686 0.83 -0.0
688,591 + B158DRAFT_0686 0.85 -0.0
688,596 - B158DRAFT_0686 0.85 -0.1
688,642 + -0.8
688,662 + -0.0
688,715 + +0.0
688,723 - -0.3
688,751 + +0.1
688,767 - -1.0
688,827 + B158DRAFT_0687 0.17 +0.0
688,827 + B158DRAFT_0687 0.17 -0.5
688,827 - B158DRAFT_0687 0.17 -0.4
688,835 - B158DRAFT_0687 0.19 +0.0
688,940 + B158DRAFT_0687 0.46 +1.1
688,940 + B158DRAFT_0687 0.46 +0.0
688,940 + B158DRAFT_0687 0.46 +0.1
688,945 + B158DRAFT_0687 0.47 -0.4
688,947 - B158DRAFT_0687 0.48 -0.2
688,968 + B158DRAFT_0687 0.53 +0.2
689,010 - B158DRAFT_0687 0.64 +0.0
689,018 - B158DRAFT_0687 0.66 +0.1
689,067 - B158DRAFT_0687 0.79 +0.3
689,105 + B158DRAFT_0687 0.89 -0.0
689,105 + B158DRAFT_0687 0.89 -0.8
689,105 + B158DRAFT_0687 0.89 +0.2
689,105 + B158DRAFT_0687 0.89 +0.3
689,105 + B158DRAFT_0687 0.89 +0.4
689,113 - +0.2
689,113 - +0.2
689,113 - -0.1
689,113 - -0.0
689,113 - -0.3
689,113 - +0.3
689,113 - +0.2
689,126 - +0.1
689,172 + +0.3
689,176 + +0.1
689,259 + -0.4
689,441 - B158DRAFT_0688 0.16 -1.6
689,501 - B158DRAFT_0688 0.22 +0.4
689,619 + B158DRAFT_0688 0.35 -2.2

Or see this region's nucleotide sequence