Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0672

Experiment: m.b. Doxycycline hyclate 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0670 and B158DRAFT_0671 overlap by 8 nucleotidesB158DRAFT_0671 and B158DRAFT_0672 are separated by 18 nucleotidesB158DRAFT_0672 and B158DRAFT_0674 are separated by 285 nucleotides B158DRAFT_0670: B158DRAFT_0670 - Uncharacterized protein required for cytochrome oxidase assembly, at 672,866 to 673,975 _0670 B158DRAFT_0671: B158DRAFT_0671 - protoheme IX farnesyltransferase, at 673,968 to 674,915 _0671 B158DRAFT_0672: B158DRAFT_0672 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 674,934 to 675,584 _0672 B158DRAFT_0674: B158DRAFT_0674 - putative efflux protein, MATE family, at 675,870 to 677,246 _0674 Position (kb) 674 675 676Strain fitness (log2 ratio) -1 0 1at 673.959 kb on + strandat 674.024 kb on - strandat 674.063 kb on + strand, within B158DRAFT_0671at 674.100 kb on - strand, within B158DRAFT_0671at 674.116 kb on - strand, within B158DRAFT_0671at 674.162 kb on - strand, within B158DRAFT_0671at 674.169 kb on + strand, within B158DRAFT_0671at 674.177 kb on - strand, within B158DRAFT_0671at 674.214 kb on + strand, within B158DRAFT_0671at 674.231 kb on + strand, within B158DRAFT_0671at 674.254 kb on - strand, within B158DRAFT_0671at 674.373 kb on + strand, within B158DRAFT_0671at 674.374 kb on + strand, within B158DRAFT_0671at 674.397 kb on + strand, within B158DRAFT_0671at 674.527 kb on - strand, within B158DRAFT_0671at 674.527 kb on - strand, within B158DRAFT_0671at 674.766 kb on - strand, within B158DRAFT_0671at 674.830 kb on + strandat 674.838 kb on - strandat 674.838 kb on - strandat 675.105 kb on + strand, within B158DRAFT_0672at 675.172 kb on + strand, within B158DRAFT_0672at 675.180 kb on - strand, within B158DRAFT_0672at 675.180 kb on - strand, within B158DRAFT_0672at 675.244 kb on + strand, within B158DRAFT_0672at 675.341 kb on + strand, within B158DRAFT_0672at 675.479 kb on - strand, within B158DRAFT_0672at 675.492 kb on + strand, within B158DRAFT_0672at 675.492 kb on + strand, within B158DRAFT_0672at 675.500 kb on - strand, within B158DRAFT_0672at 675.500 kb on - strand, within B158DRAFT_0672at 675.500 kb on - strand, within B158DRAFT_0672at 675.519 kb on + strand, within B158DRAFT_0672at 675.519 kb on + strand, within B158DRAFT_0672at 675.527 kb on - strandat 675.527 kb on - strandat 675.535 kb on + strandat 675.550 kb on - strandat 675.586 kb on - strandat 675.785 kb on - strandat 675.850 kb on - strandat 675.869 kb on - strandat 675.883 kb on - strandat 675.903 kb on + strandat 675.913 kb on + strandat 675.913 kb on + strandat 675.918 kb on + strandat 675.921 kb on - strandat 676.054 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.155 kb on + strand, within B158DRAFT_0674at 676.189 kb on + strand, within B158DRAFT_0674at 676.252 kb on + strand, within B158DRAFT_0674at 676.280 kb on - strand, within B158DRAFT_0674at 676.284 kb on + strand, within B158DRAFT_0674at 676.285 kb on - strand, within B158DRAFT_0674at 676.302 kb on + strand, within B158DRAFT_0674at 676.310 kb on - strand, within B158DRAFT_0674at 676.447 kb on + strand, within B158DRAFT_0674at 676.468 kb on + strand, within B158DRAFT_0674at 676.476 kb on - strand, within B158DRAFT_0674at 676.478 kb on + strand, within B158DRAFT_0674at 676.481 kb on - strand, within B158DRAFT_0674at 676.497 kb on - strand, within B158DRAFT_0674at 676.507 kb on - strand, within B158DRAFT_0674at 676.512 kb on - strand, within B158DRAFT_0674

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.03125 mg/ml
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673,959 + -0.8
674,024 - +0.2
674,063 + B158DRAFT_0671 0.10 +0.4
674,100 - B158DRAFT_0671 0.14 -0.6
674,116 - B158DRAFT_0671 0.16 -0.0
674,162 - B158DRAFT_0671 0.20 +0.1
674,169 + B158DRAFT_0671 0.21 -0.3
674,177 - B158DRAFT_0671 0.22 -0.0
674,214 + B158DRAFT_0671 0.26 +0.8
674,231 + B158DRAFT_0671 0.28 -0.2
674,254 - B158DRAFT_0671 0.30 +0.0
674,373 + B158DRAFT_0671 0.43 +0.1
674,374 + B158DRAFT_0671 0.43 +0.6
674,397 + B158DRAFT_0671 0.45 -1.1
674,527 - B158DRAFT_0671 0.59 -0.0
674,527 - B158DRAFT_0671 0.59 -0.1
674,766 - B158DRAFT_0671 0.84 +0.4
674,830 + +0.1
674,838 - +0.3
674,838 - -1.2
675,105 + B158DRAFT_0672 0.26 -0.1
675,172 + B158DRAFT_0672 0.37 +0.3
675,180 - B158DRAFT_0672 0.38 -1.0
675,180 - B158DRAFT_0672 0.38 -0.2
675,244 + B158DRAFT_0672 0.48 -0.2
675,341 + B158DRAFT_0672 0.63 +1.3
675,479 - B158DRAFT_0672 0.84 -0.1
675,492 + B158DRAFT_0672 0.86 -0.5
675,492 + B158DRAFT_0672 0.86 +0.2
675,500 - B158DRAFT_0672 0.87 -0.4
675,500 - B158DRAFT_0672 0.87 -0.1
675,500 - B158DRAFT_0672 0.87 +0.2
675,519 + B158DRAFT_0672 0.90 +0.0
675,519 + B158DRAFT_0672 0.90 +0.4
675,527 - +0.4
675,527 - +0.4
675,535 + -0.9
675,550 - +0.1
675,586 - -0.6
675,785 - -0.3
675,850 - -0.5
675,869 - +0.2
675,883 - -0.3
675,903 + +0.1
675,913 + -0.6
675,913 + +0.0
675,918 + +0.2
675,921 - -0.0
676,054 + B158DRAFT_0674 0.13 +0.3
676,127 + B158DRAFT_0674 0.19 +0.2
676,127 + B158DRAFT_0674 0.19 -1.0
676,127 + B158DRAFT_0674 0.19 +0.1
676,127 + B158DRAFT_0674 0.19 +0.3
676,127 + B158DRAFT_0674 0.19 -0.3
676,127 + B158DRAFT_0674 0.19 -1.3
676,127 + B158DRAFT_0674 0.19 -0.1
676,127 + B158DRAFT_0674 0.19 -0.2
676,127 + B158DRAFT_0674 0.19 -0.3
676,127 + B158DRAFT_0674 0.19 +0.5
676,127 + B158DRAFT_0674 0.19 -0.2
676,127 + B158DRAFT_0674 0.19 +0.1
676,127 + B158DRAFT_0674 0.19 -0.3
676,135 - B158DRAFT_0674 0.19 -0.6
676,135 - B158DRAFT_0674 0.19 -0.2
676,135 - B158DRAFT_0674 0.19 +0.2
676,135 - B158DRAFT_0674 0.19 -0.2
676,135 - B158DRAFT_0674 0.19 -0.0
676,135 - B158DRAFT_0674 0.19 +0.2
676,135 - B158DRAFT_0674 0.19 -0.0
676,135 - B158DRAFT_0674 0.19 -0.1
676,135 - B158DRAFT_0674 0.19 -0.2
676,135 - B158DRAFT_0674 0.19 -0.4
676,155 + B158DRAFT_0674 0.21 -0.6
676,189 + B158DRAFT_0674 0.23 +0.7
676,252 + B158DRAFT_0674 0.28 -0.3
676,280 - B158DRAFT_0674 0.30 -0.3
676,284 + B158DRAFT_0674 0.30 +0.1
676,285 - B158DRAFT_0674 0.30 +0.8
676,302 + B158DRAFT_0674 0.31 +0.1
676,310 - B158DRAFT_0674 0.32 +0.5
676,447 + B158DRAFT_0674 0.42 +0.4
676,468 + B158DRAFT_0674 0.43 -0.4
676,476 - B158DRAFT_0674 0.44 -0.2
676,478 + B158DRAFT_0674 0.44 +0.7
676,481 - B158DRAFT_0674 0.44 -0.3
676,497 - B158DRAFT_0674 0.46 +0.5
676,507 - B158DRAFT_0674 0.46 -0.2
676,512 - B158DRAFT_0674 0.47 -0.4

Or see this region's nucleotide sequence