Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2488

Experiment: m.b. Doxycycline hyclate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2486 and B158DRAFT_2487 are separated by 161 nucleotidesB158DRAFT_2487 and B158DRAFT_2488 are separated by 3 nucleotidesB158DRAFT_2488 and B158DRAFT_2489 are separated by 58 nucleotidesB158DRAFT_2489 and B158DRAFT_2490 are separated by 115 nucleotidesB158DRAFT_2490 and B158DRAFT_2491 are separated by 40 nucleotides B158DRAFT_2486: B158DRAFT_2486 - Uncharacterized protein conserved in bacteria, at 669,929 to 670,585 _2486 B158DRAFT_2487: B158DRAFT_2487 - Predicted integral membrane protein, at 670,747 to 671,100 _2487 B158DRAFT_2488: B158DRAFT_2488 - hypothetical protein, at 671,104 to 671,628 _2488 B158DRAFT_2489: B158DRAFT_2489 - hypothetical protein, at 671,687 to 671,800 _2489 B158DRAFT_2490: B158DRAFT_2490 - Adenylate kinase (EC 2.7.4.3), at 671,916 to 672,572 _2490 B158DRAFT_2491: B158DRAFT_2491 - ferrochelatase (EC 4.99.1.1), at 672,613 to 673,605 _2491 Position (kb) 671 672Strain fitness (log2 ratio) -2 -1 0 1at 670.216 kb on - strand, within B158DRAFT_2486at 670.216 kb on - strand, within B158DRAFT_2486at 670.249 kb on + strand, within B158DRAFT_2486at 670.262 kb on + strand, within B158DRAFT_2486at 670.291 kb on + strand, within B158DRAFT_2486at 670.291 kb on + strand, within B158DRAFT_2486at 670.297 kb on + strand, within B158DRAFT_2486at 670.318 kb on + strand, within B158DRAFT_2486at 670.326 kb on - strand, within B158DRAFT_2486at 670.339 kb on - strand, within B158DRAFT_2486at 670.341 kb on + strand, within B158DRAFT_2486at 670.385 kb on + strand, within B158DRAFT_2486at 670.393 kb on - strand, within B158DRAFT_2486at 670.393 kb on - strand, within B158DRAFT_2486at 670.434 kb on + strand, within B158DRAFT_2486at 670.438 kb on - strand, within B158DRAFT_2486at 670.482 kb on + strand, within B158DRAFT_2486at 670.490 kb on - strand, within B158DRAFT_2486at 670.579 kb on + strandat 670.662 kb on + strandat 670.665 kb on - strandat 670.665 kb on - strandat 670.673 kb on - strandat 670.678 kb on - strandat 670.686 kb on + strandat 670.839 kb on - strand, within B158DRAFT_2487at 670.848 kb on + strand, within B158DRAFT_2487at 670.860 kb on + strand, within B158DRAFT_2487at 670.868 kb on - strand, within B158DRAFT_2487at 670.868 kb on - strand, within B158DRAFT_2487at 670.868 kb on - strand, within B158DRAFT_2487at 670.875 kb on - strand, within B158DRAFT_2487at 670.891 kb on + strand, within B158DRAFT_2487at 670.891 kb on + strand, within B158DRAFT_2487at 670.891 kb on + strand, within B158DRAFT_2487at 670.891 kb on + strand, within B158DRAFT_2487at 670.891 kb on + strand, within B158DRAFT_2487at 670.891 kb on + strand, within B158DRAFT_2487at 670.899 kb on - strand, within B158DRAFT_2487at 670.899 kb on - strand, within B158DRAFT_2487at 670.959 kb on - strand, within B158DRAFT_2487at 670.991 kb on + strand, within B158DRAFT_2487at 671.032 kb on + strand, within B158DRAFT_2487at 671.076 kb on + strandat 671.076 kb on + strandat 671.076 kb on + strandat 671.076 kb on + strandat 671.084 kb on - strandat 671.095 kb on + strandat 671.095 kb on + strandat 671.095 kb on - strandat 671.111 kb on + strandat 671.129 kb on + strandat 671.134 kb on + strandat 671.136 kb on + strandat 671.136 kb on + strandat 671.139 kb on + strandat 671.144 kb on - strandat 671.144 kb on - strandat 671.144 kb on - strandat 671.177 kb on + strand, within B158DRAFT_2488at 671.185 kb on + strand, within B158DRAFT_2488at 671.197 kb on - strand, within B158DRAFT_2488at 671.235 kb on + strand, within B158DRAFT_2488at 671.235 kb on + strand, within B158DRAFT_2488at 671.235 kb on + strand, within B158DRAFT_2488at 671.259 kb on + strand, within B158DRAFT_2488at 671.259 kb on + strand, within B158DRAFT_2488at 671.259 kb on + strand, within B158DRAFT_2488at 671.259 kb on + strand, within B158DRAFT_2488at 671.267 kb on - strand, within B158DRAFT_2488at 671.267 kb on - strand, within B158DRAFT_2488at 671.279 kb on + strand, within B158DRAFT_2488at 671.315 kb on + strand, within B158DRAFT_2488at 671.315 kb on + strand, within B158DRAFT_2488at 671.315 kb on + strand, within B158DRAFT_2488at 671.315 kb on + strand, within B158DRAFT_2488at 671.316 kb on + strand, within B158DRAFT_2488at 671.316 kb on - strand, within B158DRAFT_2488at 671.323 kb on - strand, within B158DRAFT_2488at 671.324 kb on - strand, within B158DRAFT_2488at 671.324 kb on - strand, within B158DRAFT_2488at 671.324 kb on - strand, within B158DRAFT_2488at 671.365 kb on - strand, within B158DRAFT_2488at 671.365 kb on - strand, within B158DRAFT_2488at 671.378 kb on + strand, within B158DRAFT_2488at 671.408 kb on - strand, within B158DRAFT_2488at 671.441 kb on + strand, within B158DRAFT_2488at 671.449 kb on - strand, within B158DRAFT_2488at 671.454 kb on + strand, within B158DRAFT_2488at 671.454 kb on + strand, within B158DRAFT_2488at 671.457 kb on + strand, within B158DRAFT_2488at 671.457 kb on + strand, within B158DRAFT_2488at 671.462 kb on + strand, within B158DRAFT_2488at 671.462 kb on - strand, within B158DRAFT_2488at 671.462 kb on - strand, within B158DRAFT_2488at 671.462 kb on - strand, within B158DRAFT_2488at 671.462 kb on - strand, within B158DRAFT_2488at 671.465 kb on - strand, within B158DRAFT_2488at 671.537 kb on + strand, within B158DRAFT_2488at 671.537 kb on + strand, within B158DRAFT_2488at 671.537 kb on + strand, within B158DRAFT_2488at 671.537 kb on + strand, within B158DRAFT_2488at 671.545 kb on - strand, within B158DRAFT_2488at 671.545 kb on - strand, within B158DRAFT_2488at 671.550 kb on - strand, within B158DRAFT_2488at 671.557 kb on + strand, within B158DRAFT_2488at 671.558 kb on + strand, within B158DRAFT_2488at 671.562 kb on + strand, within B158DRAFT_2488at 671.566 kb on - strand, within B158DRAFT_2488at 671.566 kb on - strand, within B158DRAFT_2488at 671.642 kb on + strandat 671.642 kb on + strandat 671.750 kb on + strand, within B158DRAFT_2489at 672.581 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.0625 mg/ml
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670,216 - B158DRAFT_2486 0.44 +0.3
670,216 - B158DRAFT_2486 0.44 +0.5
670,249 + B158DRAFT_2486 0.49 -0.1
670,262 + B158DRAFT_2486 0.51 -0.1
670,291 + B158DRAFT_2486 0.55 +0.3
670,291 + B158DRAFT_2486 0.55 -0.2
670,297 + B158DRAFT_2486 0.56 +1.0
670,318 + B158DRAFT_2486 0.59 +0.0
670,326 - B158DRAFT_2486 0.60 +0.2
670,339 - B158DRAFT_2486 0.62 +0.5
670,341 + B158DRAFT_2486 0.63 +0.0
670,385 + B158DRAFT_2486 0.69 +0.0
670,393 - B158DRAFT_2486 0.71 +0.1
670,393 - B158DRAFT_2486 0.71 +0.0
670,434 + B158DRAFT_2486 0.77 -0.1
670,438 - B158DRAFT_2486 0.77 +0.1
670,482 + B158DRAFT_2486 0.84 -0.3
670,490 - B158DRAFT_2486 0.85 -0.1
670,579 + -0.8
670,662 + -0.1
670,665 - -0.4
670,665 - +0.4
670,673 - -0.4
670,678 - -0.0
670,686 + +0.5
670,839 - B158DRAFT_2487 0.26 +0.5
670,848 + B158DRAFT_2487 0.29 -0.9
670,860 + B158DRAFT_2487 0.32 -2.3
670,868 - B158DRAFT_2487 0.34 -0.3
670,868 - B158DRAFT_2487 0.34 +0.1
670,868 - B158DRAFT_2487 0.34 +0.2
670,875 - B158DRAFT_2487 0.36 +0.5
670,891 + B158DRAFT_2487 0.41 +0.1
670,891 + B158DRAFT_2487 0.41 +0.3
670,891 + B158DRAFT_2487 0.41 +0.9
670,891 + B158DRAFT_2487 0.41 -0.0
670,891 + B158DRAFT_2487 0.41 +0.5
670,891 + B158DRAFT_2487 0.41 +0.6
670,899 - B158DRAFT_2487 0.43 +0.2
670,899 - B158DRAFT_2487 0.43 +0.1
670,959 - B158DRAFT_2487 0.60 +0.1
670,991 + B158DRAFT_2487 0.69 +0.4
671,032 + B158DRAFT_2487 0.81 +0.7
671,076 + -0.2
671,076 + +0.0
671,076 + -0.4
671,076 + -0.2
671,084 - -0.6
671,095 + +0.4
671,095 + -0.7
671,095 - -0.0
671,111 + -0.2
671,129 + -0.3
671,134 + -1.2
671,136 + -0.7
671,136 + -0.7
671,139 + -0.2
671,144 - -0.4
671,144 - -0.5
671,144 - -0.5
671,177 + B158DRAFT_2488 0.14 -1.0
671,185 + B158DRAFT_2488 0.15 -0.3
671,197 - B158DRAFT_2488 0.18 +0.4
671,235 + B158DRAFT_2488 0.25 +0.3
671,235 + B158DRAFT_2488 0.25 +0.0
671,235 + B158DRAFT_2488 0.25 +0.1
671,259 + B158DRAFT_2488 0.30 +0.3
671,259 + B158DRAFT_2488 0.30 -0.3
671,259 + B158DRAFT_2488 0.30 +0.0
671,259 + B158DRAFT_2488 0.30 -0.0
671,267 - B158DRAFT_2488 0.31 +0.6
671,267 - B158DRAFT_2488 0.31 +0.1
671,279 + B158DRAFT_2488 0.33 -0.2
671,315 + B158DRAFT_2488 0.40 -0.0
671,315 + B158DRAFT_2488 0.40 -0.1
671,315 + B158DRAFT_2488 0.40 -0.1
671,315 + B158DRAFT_2488 0.40 +0.2
671,316 + B158DRAFT_2488 0.40 -0.3
671,316 - B158DRAFT_2488 0.40 -0.9
671,323 - B158DRAFT_2488 0.42 +0.0
671,324 - B158DRAFT_2488 0.42 -0.0
671,324 - B158DRAFT_2488 0.42 -0.7
671,324 - B158DRAFT_2488 0.42 -0.3
671,365 - B158DRAFT_2488 0.50 -0.6
671,365 - B158DRAFT_2488 0.50 +0.1
671,378 + B158DRAFT_2488 0.52 +0.5
671,408 - B158DRAFT_2488 0.58 -1.1
671,441 + B158DRAFT_2488 0.64 -0.1
671,449 - B158DRAFT_2488 0.66 -0.6
671,454 + B158DRAFT_2488 0.67 +1.0
671,454 + B158DRAFT_2488 0.67 +0.2
671,457 + B158DRAFT_2488 0.67 +0.3
671,457 + B158DRAFT_2488 0.67 +0.4
671,462 + B158DRAFT_2488 0.68 -0.6
671,462 - B158DRAFT_2488 0.68 -0.2
671,462 - B158DRAFT_2488 0.68 +0.2
671,462 - B158DRAFT_2488 0.68 -0.5
671,462 - B158DRAFT_2488 0.68 +0.1
671,465 - B158DRAFT_2488 0.69 -0.1
671,537 + B158DRAFT_2488 0.82 -0.5
671,537 + B158DRAFT_2488 0.82 +0.5
671,537 + B158DRAFT_2488 0.82 -0.1
671,537 + B158DRAFT_2488 0.82 -0.2
671,545 - B158DRAFT_2488 0.84 +0.0
671,545 - B158DRAFT_2488 0.84 -0.3
671,550 - B158DRAFT_2488 0.85 -0.2
671,557 + B158DRAFT_2488 0.86 +0.3
671,558 + B158DRAFT_2488 0.86 -0.1
671,562 + B158DRAFT_2488 0.87 -0.0
671,566 - B158DRAFT_2488 0.88 -0.2
671,566 - B158DRAFT_2488 0.88 -0.2
671,642 + -0.2
671,642 + -0.2
671,750 + B158DRAFT_2489 0.55 +0.5
672,581 + +0.4

Or see this region's nucleotide sequence