Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2053

Experiment: m.b. Doxycycline hyclate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2052 and B158DRAFT_2053 are separated by 29 nucleotidesB158DRAFT_2053 and B158DRAFT_2054 are separated by 125 nucleotides B158DRAFT_2052: B158DRAFT_2052 - GTP-binding protein YchF, at 185,914 to 187,005 _2052 B158DRAFT_2053: B158DRAFT_2053 - peptidyl-tRNA hydrolase, at 187,035 to 187,628 _2053 B158DRAFT_2054: B158DRAFT_2054 - ribosomal protein L25, Ctc-form, at 187,754 to 188,431 _2054 Position (kb) 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 186.055 kb on + strand, within B158DRAFT_2052at 186.055 kb on + strand, within B158DRAFT_2052at 186.063 kb on - strand, within B158DRAFT_2052at 186.076 kb on + strand, within B158DRAFT_2052at 186.178 kb on - strand, within B158DRAFT_2052at 186.179 kb on - strand, within B158DRAFT_2052at 186.181 kb on + strand, within B158DRAFT_2052at 186.181 kb on + strand, within B158DRAFT_2052at 186.181 kb on + strand, within B158DRAFT_2052at 186.181 kb on + strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.205 kb on + strand, within B158DRAFT_2052at 186.205 kb on + strand, within B158DRAFT_2052at 186.205 kb on + strand, within B158DRAFT_2052at 186.210 kb on + strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.215 kb on + strand, within B158DRAFT_2052at 186.215 kb on + strand, within B158DRAFT_2052at 186.223 kb on - strand, within B158DRAFT_2052at 186.223 kb on - strand, within B158DRAFT_2052at 186.223 kb on - strand, within B158DRAFT_2052at 186.225 kb on + strand, within B158DRAFT_2052at 186.233 kb on - strand, within B158DRAFT_2052at 186.236 kb on + strand, within B158DRAFT_2052at 186.244 kb on - strand, within B158DRAFT_2052at 186.298 kb on + strand, within B158DRAFT_2052at 186.306 kb on - strand, within B158DRAFT_2052at 186.377 kb on + strand, within B158DRAFT_2052at 186.377 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.467 kb on - strand, within B158DRAFT_2052at 186.469 kb on + strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.590 kb on + strand, within B158DRAFT_2052at 186.688 kb on + strand, within B158DRAFT_2052at 186.688 kb on + strand, within B158DRAFT_2052at 186.745 kb on + strand, within B158DRAFT_2052at 186.750 kb on + strand, within B158DRAFT_2052at 186.751 kb on + strand, within B158DRAFT_2052at 186.753 kb on - strand, within B158DRAFT_2052at 186.766 kb on - strand, within B158DRAFT_2052at 186.869 kb on - strand, within B158DRAFT_2052at 186.891 kb on + strand, within B158DRAFT_2052at 186.899 kb on - strandat 186.910 kb on + strandat 186.944 kb on + strandat 186.944 kb on + strandat 186.945 kb on - strandat 186.949 kb on + strandat 186.952 kb on - strandat 186.962 kb on - strandat 187.014 kb on - strandat 187.049 kb on + strandat 187.049 kb on + strandat 187.057 kb on - strandat 187.057 kb on - strandat 187.075 kb on + strandat 187.075 kb on + strandat 187.075 kb on + strandat 187.075 kb on + strandat 187.075 kb on + strandat 187.075 kb on + strandat 187.083 kb on - strandat 187.083 kb on - strandat 187.101 kb on + strand, within B158DRAFT_2053at 187.628 kb on - strandat 187.651 kb on - strandat 187.760 kb on - strandat 187.865 kb on - strand, within B158DRAFT_2054at 187.889 kb on + strand, within B158DRAFT_2054at 187.897 kb on - strand, within B158DRAFT_2054at 187.957 kb on - strand, within B158DRAFT_2054at 187.969 kb on + strand, within B158DRAFT_2054at 187.969 kb on + strand, within B158DRAFT_2054at 188.037 kb on - strand, within B158DRAFT_2054at 188.102 kb on + strand, within B158DRAFT_2054at 188.102 kb on + strand, within B158DRAFT_2054

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.0625 mg/ml
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186,055 + B158DRAFT_2052 0.13 +0.0
186,055 + B158DRAFT_2052 0.13 -0.9
186,063 - B158DRAFT_2052 0.14 -1.0
186,076 + B158DRAFT_2052 0.15 -1.7
186,178 - B158DRAFT_2052 0.24 -0.4
186,179 - B158DRAFT_2052 0.24 -1.2
186,181 + B158DRAFT_2052 0.24 -0.1
186,181 + B158DRAFT_2052 0.24 -2.8
186,181 + B158DRAFT_2052 0.24 -2.4
186,181 + B158DRAFT_2052 0.24 -0.4
186,189 - B158DRAFT_2052 0.25 -0.6
186,189 - B158DRAFT_2052 0.25 -0.3
186,189 - B158DRAFT_2052 0.25 -0.5
186,189 - B158DRAFT_2052 0.25 -0.3
186,189 - B158DRAFT_2052 0.25 -0.5
186,205 + B158DRAFT_2052 0.27 -0.7
186,205 + B158DRAFT_2052 0.27 -0.7
186,205 + B158DRAFT_2052 0.27 -0.6
186,210 + B158DRAFT_2052 0.27 +0.4
186,213 - B158DRAFT_2052 0.27 -1.1
186,213 - B158DRAFT_2052 0.27 -0.9
186,213 - B158DRAFT_2052 0.27 -1.9
186,213 - B158DRAFT_2052 0.27 -1.6
186,213 - B158DRAFT_2052 0.27 -0.4
186,215 + B158DRAFT_2052 0.28 -1.3
186,215 + B158DRAFT_2052 0.28 +0.2
186,223 - B158DRAFT_2052 0.28 -1.0
186,223 - B158DRAFT_2052 0.28 -1.8
186,223 - B158DRAFT_2052 0.28 -1.0
186,225 + B158DRAFT_2052 0.28 -2.0
186,233 - B158DRAFT_2052 0.29 -1.8
186,236 + B158DRAFT_2052 0.29 +0.1
186,244 - B158DRAFT_2052 0.30 -0.4
186,298 + B158DRAFT_2052 0.35 -0.9
186,306 - B158DRAFT_2052 0.36 -1.1
186,377 + B158DRAFT_2052 0.42 -1.3
186,377 + B158DRAFT_2052 0.42 +0.1
186,459 + B158DRAFT_2052 0.50 -0.6
186,459 + B158DRAFT_2052 0.50 -0.5
186,459 + B158DRAFT_2052 0.50 -0.3
186,459 + B158DRAFT_2052 0.50 -0.2
186,459 + B158DRAFT_2052 0.50 -1.8
186,459 + B158DRAFT_2052 0.50 -0.6
186,459 + B158DRAFT_2052 0.50 -0.2
186,459 + B158DRAFT_2052 0.50 -0.1
186,467 - B158DRAFT_2052 0.51 -2.4
186,469 + B158DRAFT_2052 0.51 -0.4
186,477 - B158DRAFT_2052 0.52 +0.2
186,477 - B158DRAFT_2052 0.52 +0.1
186,477 - B158DRAFT_2052 0.52 -0.9
186,477 - B158DRAFT_2052 0.52 -0.7
186,477 - B158DRAFT_2052 0.52 -0.8
186,590 + B158DRAFT_2052 0.62 -0.5
186,688 + B158DRAFT_2052 0.71 -0.6
186,688 + B158DRAFT_2052 0.71 -0.4
186,745 + B158DRAFT_2052 0.76 -0.3
186,750 + B158DRAFT_2052 0.77 -0.8
186,751 + B158DRAFT_2052 0.77 -0.8
186,753 - B158DRAFT_2052 0.77 -0.5
186,766 - B158DRAFT_2052 0.78 -0.8
186,869 - B158DRAFT_2052 0.87 -0.0
186,891 + B158DRAFT_2052 0.89 -0.6
186,899 - -0.4
186,910 + +0.2
186,944 + -0.8
186,944 + -1.1
186,945 - -0.2
186,949 + -0.8
186,952 - -1.8
186,962 - -1.2
187,014 - +0.7
187,049 + -1.8
187,049 + +1.2
187,057 - +0.4
187,057 - -0.1
187,075 + -1.9
187,075 + -0.3
187,075 + -1.1
187,075 + -0.6
187,075 + -2.0
187,075 + -1.5
187,083 - -0.2
187,083 - -0.2
187,101 + B158DRAFT_2053 0.11 -1.3
187,628 - +0.2
187,651 - -0.4
187,760 - -1.1
187,865 - B158DRAFT_2054 0.16 -1.7
187,889 + B158DRAFT_2054 0.20 -0.9
187,897 - B158DRAFT_2054 0.21 -1.6
187,957 - B158DRAFT_2054 0.30 -1.7
187,969 + B158DRAFT_2054 0.32 +2.2
187,969 + B158DRAFT_2054 0.32 +0.5
188,037 - B158DRAFT_2054 0.42 -0.1
188,102 + B158DRAFT_2054 0.51 -1.8
188,102 + B158DRAFT_2054 0.51 -1.7

Or see this region's nucleotide sequence