Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2051

Experiment: m.b. Doxycycline hyclate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2050 and B158DRAFT_2051 are separated by 126 nucleotidesB158DRAFT_2051 and B158DRAFT_2052 are separated by 98 nucleotides B158DRAFT_2050: B158DRAFT_2050 - hypothetical protein, at 183,675 to 185,612 _2050 B158DRAFT_2051: B158DRAFT_2051 - tRNA_Met_CAT, at 185,739 to 185,815 _2051 B158DRAFT_2052: B158DRAFT_2052 - GTP-binding protein YchF, at 185,914 to 187,005 _2052 Position (kb) 185 186Strain fitness (log2 ratio) -3 -2 -1 0 1at 184.784 kb on + strand, within B158DRAFT_2050at 184.784 kb on + strand, within B158DRAFT_2050at 184.789 kb on + strand, within B158DRAFT_2050at 184.982 kb on + strand, within B158DRAFT_2050at 185.447 kb on - strandat 185.547 kb on - strandat 185.548 kb on + strandat 185.555 kb on + strandat 185.556 kb on - strandat 185.911 kb on + strandat 185.919 kb on - strandat 185.919 kb on - strandat 185.940 kb on - strandat 185.957 kb on + strandat 185.965 kb on - strandat 185.965 kb on - strandat 186.055 kb on + strand, within B158DRAFT_2052at 186.055 kb on + strand, within B158DRAFT_2052at 186.063 kb on - strand, within B158DRAFT_2052at 186.076 kb on + strand, within B158DRAFT_2052at 186.178 kb on - strand, within B158DRAFT_2052at 186.179 kb on - strand, within B158DRAFT_2052at 186.181 kb on + strand, within B158DRAFT_2052at 186.181 kb on + strand, within B158DRAFT_2052at 186.181 kb on + strand, within B158DRAFT_2052at 186.181 kb on + strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.189 kb on - strand, within B158DRAFT_2052at 186.205 kb on + strand, within B158DRAFT_2052at 186.205 kb on + strand, within B158DRAFT_2052at 186.205 kb on + strand, within B158DRAFT_2052at 186.210 kb on + strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.213 kb on - strand, within B158DRAFT_2052at 186.215 kb on + strand, within B158DRAFT_2052at 186.215 kb on + strand, within B158DRAFT_2052at 186.223 kb on - strand, within B158DRAFT_2052at 186.223 kb on - strand, within B158DRAFT_2052at 186.223 kb on - strand, within B158DRAFT_2052at 186.225 kb on + strand, within B158DRAFT_2052at 186.233 kb on - strand, within B158DRAFT_2052at 186.236 kb on + strand, within B158DRAFT_2052at 186.244 kb on - strand, within B158DRAFT_2052at 186.298 kb on + strand, within B158DRAFT_2052at 186.306 kb on - strand, within B158DRAFT_2052at 186.377 kb on + strand, within B158DRAFT_2052at 186.377 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.459 kb on + strand, within B158DRAFT_2052at 186.467 kb on - strand, within B158DRAFT_2052at 186.469 kb on + strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.477 kb on - strand, within B158DRAFT_2052at 186.590 kb on + strand, within B158DRAFT_2052at 186.688 kb on + strand, within B158DRAFT_2052at 186.688 kb on + strand, within B158DRAFT_2052at 186.745 kb on + strand, within B158DRAFT_2052at 186.750 kb on + strand, within B158DRAFT_2052at 186.751 kb on + strand, within B158DRAFT_2052at 186.753 kb on - strand, within B158DRAFT_2052at 186.766 kb on - strand, within B158DRAFT_2052

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.0625 mg/ml
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184,784 + B158DRAFT_2050 0.57 -0.2
184,784 + B158DRAFT_2050 0.57 -0.0
184,789 + B158DRAFT_2050 0.57 -1.0
184,982 + B158DRAFT_2050 0.67 -0.4
185,447 - -0.1
185,547 - +1.3
185,548 + +0.0
185,555 + -1.1
185,556 - +0.6
185,911 + +0.0
185,919 - -0.6
185,919 - -0.7
185,940 - -0.7
185,957 + -0.1
185,965 - -0.7
185,965 - -0.7
186,055 + B158DRAFT_2052 0.13 +0.0
186,055 + B158DRAFT_2052 0.13 -0.9
186,063 - B158DRAFT_2052 0.14 -1.0
186,076 + B158DRAFT_2052 0.15 -1.7
186,178 - B158DRAFT_2052 0.24 -0.4
186,179 - B158DRAFT_2052 0.24 -1.2
186,181 + B158DRAFT_2052 0.24 -0.1
186,181 + B158DRAFT_2052 0.24 -2.8
186,181 + B158DRAFT_2052 0.24 -2.4
186,181 + B158DRAFT_2052 0.24 -0.4
186,189 - B158DRAFT_2052 0.25 -0.6
186,189 - B158DRAFT_2052 0.25 -0.3
186,189 - B158DRAFT_2052 0.25 -0.5
186,189 - B158DRAFT_2052 0.25 -0.3
186,189 - B158DRAFT_2052 0.25 -0.5
186,205 + B158DRAFT_2052 0.27 -0.7
186,205 + B158DRAFT_2052 0.27 -0.7
186,205 + B158DRAFT_2052 0.27 -0.6
186,210 + B158DRAFT_2052 0.27 +0.4
186,213 - B158DRAFT_2052 0.27 -1.1
186,213 - B158DRAFT_2052 0.27 -0.9
186,213 - B158DRAFT_2052 0.27 -1.9
186,213 - B158DRAFT_2052 0.27 -1.6
186,213 - B158DRAFT_2052 0.27 -0.4
186,215 + B158DRAFT_2052 0.28 -1.3
186,215 + B158DRAFT_2052 0.28 +0.2
186,223 - B158DRAFT_2052 0.28 -1.0
186,223 - B158DRAFT_2052 0.28 -1.8
186,223 - B158DRAFT_2052 0.28 -1.0
186,225 + B158DRAFT_2052 0.28 -2.0
186,233 - B158DRAFT_2052 0.29 -1.8
186,236 + B158DRAFT_2052 0.29 +0.1
186,244 - B158DRAFT_2052 0.30 -0.4
186,298 + B158DRAFT_2052 0.35 -0.9
186,306 - B158DRAFT_2052 0.36 -1.1
186,377 + B158DRAFT_2052 0.42 -1.3
186,377 + B158DRAFT_2052 0.42 +0.1
186,459 + B158DRAFT_2052 0.50 -0.6
186,459 + B158DRAFT_2052 0.50 -0.5
186,459 + B158DRAFT_2052 0.50 -0.3
186,459 + B158DRAFT_2052 0.50 -0.2
186,459 + B158DRAFT_2052 0.50 -1.8
186,459 + B158DRAFT_2052 0.50 -0.6
186,459 + B158DRAFT_2052 0.50 -0.2
186,459 + B158DRAFT_2052 0.50 -0.1
186,467 - B158DRAFT_2052 0.51 -2.4
186,469 + B158DRAFT_2052 0.51 -0.4
186,477 - B158DRAFT_2052 0.52 +0.2
186,477 - B158DRAFT_2052 0.52 +0.1
186,477 - B158DRAFT_2052 0.52 -0.9
186,477 - B158DRAFT_2052 0.52 -0.7
186,477 - B158DRAFT_2052 0.52 -0.8
186,590 + B158DRAFT_2052 0.62 -0.5
186,688 + B158DRAFT_2052 0.71 -0.6
186,688 + B158DRAFT_2052 0.71 -0.4
186,745 + B158DRAFT_2052 0.76 -0.3
186,750 + B158DRAFT_2052 0.77 -0.8
186,751 + B158DRAFT_2052 0.77 -0.8
186,753 - B158DRAFT_2052 0.77 -0.5
186,766 - B158DRAFT_2052 0.78 -0.8

Or see this region's nucleotide sequence