Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2029

Experiment: m.b. Doxycycline hyclate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2027 and B158DRAFT_2028 are separated by 54 nucleotidesB158DRAFT_2028 and B158DRAFT_2029 are separated by 57 nucleotidesB158DRAFT_2029 and B158DRAFT_2030 are separated by 267 nucleotides B158DRAFT_2027: B158DRAFT_2027 - RNA polymerase sigma factor, sigma-70 family, at 157,048 to 157,572 _2027 B158DRAFT_2028: B158DRAFT_2028 - hypothetical protein, at 157,627 to 158,199 _2028 B158DRAFT_2029: B158DRAFT_2029 - Inorganic pyrophosphatase, at 158,257 to 158,787 _2029 B158DRAFT_2030: B158DRAFT_2030 - vacuolar-type H(+)-translocating pyrophosphatase, at 159,055 to 161,058 _2030 Position (kb) 158 159Strain fitness (log2 ratio) -2 -1 0 1 2at 157.295 kb on + strand, within B158DRAFT_2027at 157.295 kb on + strand, within B158DRAFT_2027at 157.368 kb on + strand, within B158DRAFT_2027at 157.431 kb on + strand, within B158DRAFT_2027at 157.439 kb on - strand, within B158DRAFT_2027at 157.439 kb on - strand, within B158DRAFT_2027at 157.460 kb on - strand, within B158DRAFT_2027at 157.503 kb on + strand, within B158DRAFT_2027at 157.515 kb on + strand, within B158DRAFT_2027at 157.515 kb on + strand, within B158DRAFT_2027at 157.520 kb on + strandat 157.523 kb on - strandat 157.525 kb on + strandat 157.525 kb on + strandat 157.525 kb on + strandat 157.533 kb on - strandat 157.543 kb on - strandat 157.550 kb on + strandat 157.705 kb on - strand, within B158DRAFT_2028at 157.840 kb on + strand, within B158DRAFT_2028at 157.840 kb on + strand, within B158DRAFT_2028at 157.840 kb on + strand, within B158DRAFT_2028at 157.848 kb on - strand, within B158DRAFT_2028at 157.853 kb on + strand, within B158DRAFT_2028at 157.910 kb on - strand, within B158DRAFT_2028at 157.951 kb on + strand, within B158DRAFT_2028at 157.995 kb on + strand, within B158DRAFT_2028at 157.995 kb on + strand, within B158DRAFT_2028at 158.003 kb on - strand, within B158DRAFT_2028at 158.003 kb on - strand, within B158DRAFT_2028at 158.028 kb on + strand, within B158DRAFT_2028at 158.036 kb on - strand, within B158DRAFT_2028at 158.036 kb on - strand, within B158DRAFT_2028at 158.036 kb on - strand, within B158DRAFT_2028at 158.042 kb on - strand, within B158DRAFT_2028at 158.047 kb on - strand, within B158DRAFT_2028at 158.047 kb on - strand, within B158DRAFT_2028at 158.047 kb on - strand, within B158DRAFT_2028at 158.076 kb on + strand, within B158DRAFT_2028at 158.094 kb on + strand, within B158DRAFT_2028at 158.113 kb on - strand, within B158DRAFT_2028at 158.149 kb on + strandat 158.282 kb on - strandat 158.282 kb on - strandat 158.953 kb on + strandat 158.963 kb on + strandat 159.097 kb on + strandat 159.097 kb on + strandat 159.111 kb on - strandat 159.207 kb on - strandat 159.280 kb on + strand, within B158DRAFT_2030at 159.288 kb on - strand, within B158DRAFT_2030at 159.320 kb on - strand, within B158DRAFT_2030at 159.321 kb on - strand, within B158DRAFT_2030at 159.322 kb on + strand, within B158DRAFT_2030at 159.323 kb on - strand, within B158DRAFT_2030at 159.325 kb on - strand, within B158DRAFT_2030at 159.340 kb on + strand, within B158DRAFT_2030at 159.345 kb on + strand, within B158DRAFT_2030at 159.348 kb on - strand, within B158DRAFT_2030at 159.366 kb on + strand, within B158DRAFT_2030at 159.375 kb on + strand, within B158DRAFT_2030at 159.388 kb on - strand, within B158DRAFT_2030at 159.399 kb on - strand, within B158DRAFT_2030at 159.415 kb on + strand, within B158DRAFT_2030at 159.416 kb on + strand, within B158DRAFT_2030at 159.417 kb on - strand, within B158DRAFT_2030at 159.417 kb on - strand, within B158DRAFT_2030at 159.478 kb on - strand, within B158DRAFT_2030at 159.570 kb on - strand, within B158DRAFT_2030at 159.621 kb on - strand, within B158DRAFT_2030at 159.627 kb on - strand, within B158DRAFT_2030at 159.627 kb on - strand, within B158DRAFT_2030at 159.754 kb on + strand, within B158DRAFT_2030at 159.786 kb on + strand, within B158DRAFT_2030

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.0625 mg/ml
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157,295 + B158DRAFT_2027 0.47 +0.6
157,295 + B158DRAFT_2027 0.47 -1.2
157,368 + B158DRAFT_2027 0.61 -0.0
157,431 + B158DRAFT_2027 0.73 -0.2
157,439 - B158DRAFT_2027 0.74 -0.6
157,439 - B158DRAFT_2027 0.74 -0.2
157,460 - B158DRAFT_2027 0.78 +0.3
157,503 + B158DRAFT_2027 0.87 +1.7
157,515 + B158DRAFT_2027 0.89 -0.5
157,515 + B158DRAFT_2027 0.89 +0.4
157,520 + +1.5
157,523 - -0.2
157,525 + -0.1
157,525 + -0.6
157,525 + -0.5
157,533 - +0.1
157,543 - -0.6
157,550 + -0.4
157,705 - B158DRAFT_2028 0.14 +0.7
157,840 + B158DRAFT_2028 0.37 -2.0
157,840 + B158DRAFT_2028 0.37 +0.4
157,840 + B158DRAFT_2028 0.37 +0.0
157,848 - B158DRAFT_2028 0.39 +0.2
157,853 + B158DRAFT_2028 0.39 -0.4
157,910 - B158DRAFT_2028 0.49 +0.7
157,951 + B158DRAFT_2028 0.57 +0.2
157,995 + B158DRAFT_2028 0.64 +1.7
157,995 + B158DRAFT_2028 0.64 +1.9
158,003 - B158DRAFT_2028 0.66 +2.1
158,003 - B158DRAFT_2028 0.66 +1.8
158,028 + B158DRAFT_2028 0.70 +2.0
158,036 - B158DRAFT_2028 0.71 +2.5
158,036 - B158DRAFT_2028 0.71 +2.3
158,036 - B158DRAFT_2028 0.71 +2.1
158,042 - B158DRAFT_2028 0.72 +2.0
158,047 - B158DRAFT_2028 0.73 +0.1
158,047 - B158DRAFT_2028 0.73 +1.7
158,047 - B158DRAFT_2028 0.73 +1.3
158,076 + B158DRAFT_2028 0.78 +1.8
158,094 + B158DRAFT_2028 0.82 +1.9
158,113 - B158DRAFT_2028 0.85 +2.4
158,149 + +1.9
158,282 - +0.3
158,282 - -0.0
158,953 + +0.0
158,963 + -0.2
159,097 + -0.3
159,097 + -0.1
159,111 - -0.7
159,207 - -0.1
159,280 + B158DRAFT_2030 0.11 -0.8
159,288 - B158DRAFT_2030 0.12 -0.1
159,320 - B158DRAFT_2030 0.13 +0.7
159,321 - B158DRAFT_2030 0.13 +0.3
159,322 + B158DRAFT_2030 0.13 -0.5
159,323 - B158DRAFT_2030 0.13 -0.1
159,325 - B158DRAFT_2030 0.13 -0.1
159,340 + B158DRAFT_2030 0.14 -0.1
159,345 + B158DRAFT_2030 0.14 -0.4
159,348 - B158DRAFT_2030 0.15 +0.2
159,366 + B158DRAFT_2030 0.16 +0.0
159,375 + B158DRAFT_2030 0.16 -0.0
159,388 - B158DRAFT_2030 0.17 +0.1
159,399 - B158DRAFT_2030 0.17 +0.0
159,415 + B158DRAFT_2030 0.18 -0.0
159,416 + B158DRAFT_2030 0.18 -0.0
159,417 - B158DRAFT_2030 0.18 +0.3
159,417 - B158DRAFT_2030 0.18 -0.4
159,478 - B158DRAFT_2030 0.21 +0.1
159,570 - B158DRAFT_2030 0.26 +0.6
159,621 - B158DRAFT_2030 0.28 -0.3
159,627 - B158DRAFT_2030 0.29 -0.7
159,627 - B158DRAFT_2030 0.29 -0.1
159,754 + B158DRAFT_2030 0.35 +0.2
159,786 + B158DRAFT_2030 0.36 +0.3

Or see this region's nucleotide sequence