Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1953

Experiment: m.b. Doxycycline hyclate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1951 and B158DRAFT_1952 are separated by 184 nucleotidesB158DRAFT_1952 and B158DRAFT_1953 are separated by 159 nucleotidesB158DRAFT_1953 and B158DRAFT_1954 are separated by 93 nucleotides B158DRAFT_1951: B158DRAFT_1951 - tRNA dimethylallyltransferase, at 87,949 to 88,902 _1951 B158DRAFT_1952: B158DRAFT_1952 - RNA chaperone Hfq, at 89,087 to 89,434 _1952 B158DRAFT_1953: B158DRAFT_1953 - GTP-binding protein HflX, at 89,594 to 90,892 _1953 B158DRAFT_1954: B158DRAFT_1954 - protease FtsH subunit HflK, at 90,986 to 92,047 _1954 Position (kb) 89 90 91Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 88.651 kb on + strand, within B158DRAFT_1951at 88.686 kb on - strand, within B158DRAFT_1951at 88.743 kb on - strand, within B158DRAFT_1951at 88.759 kb on - strand, within B158DRAFT_1951at 88.774 kb on - strand, within B158DRAFT_1951at 88.794 kb on + strand, within B158DRAFT_1951at 88.794 kb on + strand, within B158DRAFT_1951at 88.809 kb on + strandat 88.809 kb on + strandat 88.817 kb on - strandat 88.835 kb on + strandat 88.835 kb on + strandat 88.852 kb on + strandat 88.853 kb on + strandat 88.855 kb on + strandat 88.860 kb on - strandat 88.860 kb on - strandat 88.860 kb on - strandat 88.860 kb on - strandat 88.972 kb on - strandat 89.036 kb on + strandat 89.043 kb on - strandat 89.077 kb on + strandat 89.085 kb on - strandat 89.085 kb on - strandat 89.085 kb on - strandat 89.085 kb on - strandat 89.096 kb on - strandat 89.105 kb on + strandat 89.164 kb on + strand, within B158DRAFT_1952at 89.172 kb on + strand, within B158DRAFT_1952at 89.172 kb on + strand, within B158DRAFT_1952at 89.261 kb on + strand, within B158DRAFT_1952at 89.288 kb on + strand, within B158DRAFT_1952at 89.355 kb on - strand, within B158DRAFT_1952at 89.468 kb on - strandat 89.501 kb on + strandat 89.501 kb on + strandat 89.509 kb on - strandat 89.579 kb on - strandat 89.613 kb on - strandat 89.618 kb on - strandat 89.655 kb on + strandat 89.655 kb on + strandat 89.662 kb on - strandat 89.663 kb on - strandat 89.699 kb on + strandat 89.704 kb on + strandat 89.704 kb on + strandat 89.704 kb on + strandat 89.726 kb on - strand, within B158DRAFT_1953at 89.750 kb on - strand, within B158DRAFT_1953at 89.760 kb on - strand, within B158DRAFT_1953at 89.808 kb on - strand, within B158DRAFT_1953at 89.808 kb on - strand, within B158DRAFT_1953at 89.854 kb on + strand, within B158DRAFT_1953at 89.854 kb on + strand, within B158DRAFT_1953at 89.854 kb on + strand, within B158DRAFT_1953at 89.862 kb on - strand, within B158DRAFT_1953at 89.862 kb on - strand, within B158DRAFT_1953at 89.872 kb on + strand, within B158DRAFT_1953at 89.872 kb on + strand, within B158DRAFT_1953at 89.872 kb on + strand, within B158DRAFT_1953at 89.880 kb on - strand, within B158DRAFT_1953at 89.880 kb on - strand, within B158DRAFT_1953at 89.880 kb on - strand, within B158DRAFT_1953at 89.889 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.897 kb on - strand, within B158DRAFT_1953at 89.899 kb on - strand, within B158DRAFT_1953at 89.899 kb on - strand, within B158DRAFT_1953at 89.913 kb on + strand, within B158DRAFT_1953at 89.942 kb on - strand, within B158DRAFT_1953at 89.942 kb on - strand, within B158DRAFT_1953at 89.948 kb on + strand, within B158DRAFT_1953at 89.948 kb on + strand, within B158DRAFT_1953at 89.956 kb on - strand, within B158DRAFT_1953at 89.956 kb on - strand, within B158DRAFT_1953at 89.976 kb on - strand, within B158DRAFT_1953at 89.983 kb on + strand, within B158DRAFT_1953at 90.016 kb on - strand, within B158DRAFT_1953at 90.016 kb on - strand, within B158DRAFT_1953at 90.027 kb on - strand, within B158DRAFT_1953at 90.029 kb on + strand, within B158DRAFT_1953at 90.029 kb on + strand, within B158DRAFT_1953at 90.071 kb on + strand, within B158DRAFT_1953at 90.079 kb on - strand, within B158DRAFT_1953at 90.083 kb on - strand, within B158DRAFT_1953at 90.104 kb on - strand, within B158DRAFT_1953at 90.161 kb on + strand, within B158DRAFT_1953at 90.193 kb on + strand, within B158DRAFT_1953at 90.261 kb on + strand, within B158DRAFT_1953at 90.318 kb on + strand, within B158DRAFT_1953at 90.326 kb on - strand, within B158DRAFT_1953at 90.344 kb on - strand, within B158DRAFT_1953at 90.344 kb on - strand, within B158DRAFT_1953at 90.344 kb on - strand, within B158DRAFT_1953at 90.360 kb on + strand, within B158DRAFT_1953at 90.496 kb on + strand, within B158DRAFT_1953at 90.501 kb on + strand, within B158DRAFT_1953at 90.504 kb on - strand, within B158DRAFT_1953at 90.509 kb on - strand, within B158DRAFT_1953at 90.558 kb on + strand, within B158DRAFT_1953at 90.566 kb on - strand, within B158DRAFT_1953at 90.568 kb on + strand, within B158DRAFT_1953at 90.568 kb on + strand, within B158DRAFT_1953at 90.576 kb on - strand, within B158DRAFT_1953at 90.576 kb on - strand, within B158DRAFT_1953at 90.576 kb on - strand, within B158DRAFT_1953at 90.576 kb on - strand, within B158DRAFT_1953at 90.578 kb on + strand, within B158DRAFT_1953at 90.584 kb on - strand, within B158DRAFT_1953at 90.584 kb on - strand, within B158DRAFT_1953at 90.586 kb on - strand, within B158DRAFT_1953at 90.651 kb on + strand, within B158DRAFT_1953at 90.651 kb on + strand, within B158DRAFT_1953at 90.651 kb on + strand, within B158DRAFT_1953at 90.674 kb on + strand, within B158DRAFT_1953at 90.674 kb on + strand, within B158DRAFT_1953at 90.708 kb on - strand, within B158DRAFT_1953at 90.746 kb on + strand, within B158DRAFT_1953at 90.919 kb on - strandat 90.937 kb on - strandat 91.110 kb on - strand, within B158DRAFT_1954at 91.132 kb on + strand, within B158DRAFT_1954at 91.135 kb on - strand, within B158DRAFT_1954at 91.140 kb on - strand, within B158DRAFT_1954at 91.304 kb on - strand, within B158DRAFT_1954at 91.355 kb on + strand, within B158DRAFT_1954at 91.355 kb on + strand, within B158DRAFT_1954at 91.356 kb on + strand, within B158DRAFT_1954at 91.363 kb on - strand, within B158DRAFT_1954at 91.403 kb on + strand, within B158DRAFT_1954at 91.403 kb on + strand, within B158DRAFT_1954at 91.403 kb on + strand, within B158DRAFT_1954at 91.403 kb on + strand, within B158DRAFT_1954at 91.403 kb on + strand, within B158DRAFT_1954at 91.403 kb on + strand, within B158DRAFT_1954at 91.403 kb on + strand, within B158DRAFT_1954at 91.403 kb on + strand, within B158DRAFT_1954at 91.403 kb on + strand, within B158DRAFT_1954at 91.403 kb on + strand, within B158DRAFT_1954at 91.403 kb on + strand, within B158DRAFT_1954at 91.403 kb on + strand, within B158DRAFT_1954at 91.411 kb on - strand, within B158DRAFT_1954at 91.411 kb on - strand, within B158DRAFT_1954at 91.411 kb on - strand, within B158DRAFT_1954at 91.411 kb on - strand, within B158DRAFT_1954at 91.411 kb on - strand, within B158DRAFT_1954at 91.411 kb on - strand, within B158DRAFT_1954at 91.411 kb on - strand, within B158DRAFT_1954at 91.411 kb on - strand, within B158DRAFT_1954at 91.447 kb on + strand, within B158DRAFT_1954at 91.646 kb on - strand, within B158DRAFT_1954at 91.710 kb on + strand, within B158DRAFT_1954at 91.720 kb on + strand, within B158DRAFT_1954at 91.720 kb on + strand, within B158DRAFT_1954at 91.720 kb on + strand, within B158DRAFT_1954at 91.720 kb on + strand, within B158DRAFT_1954at 91.720 kb on + strand, within B158DRAFT_1954at 91.720 kb on + strand, within B158DRAFT_1954at 91.721 kb on + strand, within B158DRAFT_1954at 91.728 kb on - strand, within B158DRAFT_1954at 91.728 kb on - strand, within B158DRAFT_1954at 91.728 kb on - strand, within B158DRAFT_1954at 91.728 kb on - strand, within B158DRAFT_1954at 91.728 kb on - strand, within B158DRAFT_1954at 91.728 kb on - strand, within B158DRAFT_1954at 91.728 kb on - strand, within B158DRAFT_1954at 91.728 kb on - strand, within B158DRAFT_1954at 91.728 kb on - strand, within B158DRAFT_1954at 91.728 kb on - strand, within B158DRAFT_1954at 91.728 kb on - strand, within B158DRAFT_1954at 91.728 kb on - strand, within B158DRAFT_1954at 91.729 kb on - strand, within B158DRAFT_1954at 91.766 kb on + strand, within B158DRAFT_1954at 91.773 kb on + strand, within B158DRAFT_1954at 91.849 kb on + strand, within B158DRAFT_1954at 91.857 kb on - strand, within B158DRAFT_1954at 91.892 kb on + strand, within B158DRAFT_1954

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.0625 mg/ml
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88,651 + B158DRAFT_1951 0.74 -0.4
88,686 - B158DRAFT_1951 0.77 -0.4
88,743 - B158DRAFT_1951 0.83 -0.5
88,759 - B158DRAFT_1951 0.85 -2.1
88,774 - B158DRAFT_1951 0.86 -0.5
88,794 + B158DRAFT_1951 0.89 -0.5
88,794 + B158DRAFT_1951 0.89 -1.6
88,809 + +0.2
88,809 + -0.2
88,817 - -0.4
88,835 + -0.5
88,835 + +0.0
88,852 + -0.2
88,853 + +0.1
88,855 + +0.1
88,860 - +0.7
88,860 - +0.0
88,860 - -0.1
88,860 - +1.0
88,972 - +0.4
89,036 + +0.2
89,043 - +0.7
89,077 + +0.4
89,085 - -0.5
89,085 - +0.0
89,085 - +0.5
89,085 - -0.4
89,096 - +0.4
89,105 + +1.1
89,164 + B158DRAFT_1952 0.22 +0.2
89,172 + B158DRAFT_1952 0.24 +0.3
89,172 + B158DRAFT_1952 0.24 +0.3
89,261 + B158DRAFT_1952 0.50 +0.4
89,288 + B158DRAFT_1952 0.58 +0.2
89,355 - B158DRAFT_1952 0.77 -0.8
89,468 - -0.1
89,501 + -0.1
89,501 + +0.6
89,509 - -0.7
89,579 - -0.2
89,613 - -1.4
89,618 - -0.1
89,655 + +0.1
89,655 + -0.8
89,662 - +0.1
89,663 - -0.8
89,699 + -0.7
89,704 + -0.0
89,704 + -0.6
89,704 + -0.4
89,726 - B158DRAFT_1953 0.10 -0.4
89,750 - B158DRAFT_1953 0.12 -1.0
89,760 - B158DRAFT_1953 0.13 -1.4
89,808 - B158DRAFT_1953 0.16 -0.1
89,808 - B158DRAFT_1953 0.16 -0.3
89,854 + B158DRAFT_1953 0.20 -2.4
89,854 + B158DRAFT_1953 0.20 +0.3
89,854 + B158DRAFT_1953 0.20 -0.4
89,862 - B158DRAFT_1953 0.21 -5.3
89,862 - B158DRAFT_1953 0.21 -0.7
89,872 + B158DRAFT_1953 0.21 -0.4
89,872 + B158DRAFT_1953 0.21 -0.2
89,872 + B158DRAFT_1953 0.21 +0.2
89,880 - B158DRAFT_1953 0.22 -0.6
89,880 - B158DRAFT_1953 0.22 -0.0
89,880 - B158DRAFT_1953 0.22 -0.0
89,889 + B158DRAFT_1953 0.23 -0.1
89,891 + B158DRAFT_1953 0.23 -0.4
89,891 + B158DRAFT_1953 0.23 -0.6
89,891 + B158DRAFT_1953 0.23 -0.8
89,891 + B158DRAFT_1953 0.23 -0.3
89,891 + B158DRAFT_1953 0.23 -0.9
89,897 - B158DRAFT_1953 0.23 -0.3
89,899 - B158DRAFT_1953 0.23 -0.4
89,899 - B158DRAFT_1953 0.23 -0.7
89,913 + B158DRAFT_1953 0.25 -0.1
89,942 - B158DRAFT_1953 0.27 -0.3
89,942 - B158DRAFT_1953 0.27 -0.8
89,948 + B158DRAFT_1953 0.27 -0.1
89,948 + B158DRAFT_1953 0.27 -0.4
89,956 - B158DRAFT_1953 0.28 +0.3
89,956 - B158DRAFT_1953 0.28 -0.2
89,976 - B158DRAFT_1953 0.29 -0.2
89,983 + B158DRAFT_1953 0.30 -1.3
90,016 - B158DRAFT_1953 0.32 -1.1
90,016 - B158DRAFT_1953 0.32 -0.7
90,027 - B158DRAFT_1953 0.33 -0.8
90,029 + B158DRAFT_1953 0.33 -0.2
90,029 + B158DRAFT_1953 0.33 -0.2
90,071 + B158DRAFT_1953 0.37 -0.0
90,079 - B158DRAFT_1953 0.37 -1.3
90,083 - B158DRAFT_1953 0.38 -0.8
90,104 - B158DRAFT_1953 0.39 +0.3
90,161 + B158DRAFT_1953 0.44 -0.8
90,193 + B158DRAFT_1953 0.46 -0.3
90,261 + B158DRAFT_1953 0.51 -0.2
90,318 + B158DRAFT_1953 0.56 -1.2
90,326 - B158DRAFT_1953 0.56 -0.1
90,344 - B158DRAFT_1953 0.58 -0.3
90,344 - B158DRAFT_1953 0.58 -0.2
90,344 - B158DRAFT_1953 0.58 -0.5
90,360 + B158DRAFT_1953 0.59 -0.8
90,496 + B158DRAFT_1953 0.69 -0.1
90,501 + B158DRAFT_1953 0.70 -0.4
90,504 - B158DRAFT_1953 0.70 -0.1
90,509 - B158DRAFT_1953 0.70 +0.1
90,558 + B158DRAFT_1953 0.74 +0.1
90,566 - B158DRAFT_1953 0.75 -0.1
90,568 + B158DRAFT_1953 0.75 +0.2
90,568 + B158DRAFT_1953 0.75 -0.1
90,576 - B158DRAFT_1953 0.76 -0.2
90,576 - B158DRAFT_1953 0.76 -0.9
90,576 - B158DRAFT_1953 0.76 -0.7
90,576 - B158DRAFT_1953 0.76 +0.1
90,578 + B158DRAFT_1953 0.76 +0.6
90,584 - B158DRAFT_1953 0.76 -0.2
90,584 - B158DRAFT_1953 0.76 -1.5
90,586 - B158DRAFT_1953 0.76 -0.6
90,651 + B158DRAFT_1953 0.81 -0.6
90,651 + B158DRAFT_1953 0.81 -1.1
90,651 + B158DRAFT_1953 0.81 +2.1
90,674 + B158DRAFT_1953 0.83 -0.5
90,674 + B158DRAFT_1953 0.83 +0.0
90,708 - B158DRAFT_1953 0.86 -0.2
90,746 + B158DRAFT_1953 0.89 -0.2
90,919 - -0.4
90,937 - -1.4
91,110 - B158DRAFT_1954 0.12 -2.2
91,132 + B158DRAFT_1954 0.14 -1.7
91,135 - B158DRAFT_1954 0.14 -1.7
91,140 - B158DRAFT_1954 0.15 -1.4
91,304 - B158DRAFT_1954 0.30 -1.3
91,355 + B158DRAFT_1954 0.35 -0.8
91,355 + B158DRAFT_1954 0.35 -1.4
91,356 + B158DRAFT_1954 0.35 -1.1
91,363 - B158DRAFT_1954 0.35 -1.2
91,403 + B158DRAFT_1954 0.39 -1.2
91,403 + B158DRAFT_1954 0.39 -1.2
91,403 + B158DRAFT_1954 0.39 -1.4
91,403 + B158DRAFT_1954 0.39 -2.0
91,403 + B158DRAFT_1954 0.39 -1.2
91,403 + B158DRAFT_1954 0.39 -1.4
91,403 + B158DRAFT_1954 0.39 -1.6
91,403 + B158DRAFT_1954 0.39 -1.0
91,403 + B158DRAFT_1954 0.39 +0.7
91,403 + B158DRAFT_1954 0.39 -1.6
91,403 + B158DRAFT_1954 0.39 -1.6
91,403 + B158DRAFT_1954 0.39 -0.8
91,411 - B158DRAFT_1954 0.40 -0.8
91,411 - B158DRAFT_1954 0.40 -1.2
91,411 - B158DRAFT_1954 0.40 -1.4
91,411 - B158DRAFT_1954 0.40 -1.5
91,411 - B158DRAFT_1954 0.40 -0.8
91,411 - B158DRAFT_1954 0.40 -1.5
91,411 - B158DRAFT_1954 0.40 -1.2
91,411 - B158DRAFT_1954 0.40 -2.0
91,447 + B158DRAFT_1954 0.43 -2.4
91,646 - B158DRAFT_1954 0.62 -1.4
91,710 + B158DRAFT_1954 0.68 -1.5
91,720 + B158DRAFT_1954 0.69 -2.4
91,720 + B158DRAFT_1954 0.69 -1.2
91,720 + B158DRAFT_1954 0.69 -0.6
91,720 + B158DRAFT_1954 0.69 -1.6
91,720 + B158DRAFT_1954 0.69 -1.5
91,720 + B158DRAFT_1954 0.69 -0.8
91,721 + B158DRAFT_1954 0.69 -0.5
91,728 - B158DRAFT_1954 0.70 -1.8
91,728 - B158DRAFT_1954 0.70 -1.8
91,728 - B158DRAFT_1954 0.70 -1.7
91,728 - B158DRAFT_1954 0.70 -1.3
91,728 - B158DRAFT_1954 0.70 -1.5
91,728 - B158DRAFT_1954 0.70 -1.2
91,728 - B158DRAFT_1954 0.70 -1.4
91,728 - B158DRAFT_1954 0.70 -0.9
91,728 - B158DRAFT_1954 0.70 -1.6
91,728 - B158DRAFT_1954 0.70 -2.1
91,728 - B158DRAFT_1954 0.70 -1.4
91,728 - B158DRAFT_1954 0.70 -0.5
91,729 - B158DRAFT_1954 0.70 -1.2
91,766 + B158DRAFT_1954 0.73 -1.8
91,773 + B158DRAFT_1954 0.74 -1.6
91,849 + B158DRAFT_1954 0.81 -1.0
91,857 - B158DRAFT_1954 0.82 -1.2
91,892 + B158DRAFT_1954 0.85 -2.0

Or see this region's nucleotide sequence