Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1568

Experiment: m.b. Doxycycline hyclate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1567 and B158DRAFT_1568 overlap by 4 nucleotidesB158DRAFT_1568 and B158DRAFT_1569 are separated by 43 nucleotides B158DRAFT_1567: B158DRAFT_1567 - Imidazolonepropionase and related amidohydrolases, at 1,624,235 to 1,625,662 _1567 B158DRAFT_1568: B158DRAFT_1568 - Imidazolonepropionase and related amidohydrolases, at 1,625,659 to 1,626,963 _1568 B158DRAFT_1569: B158DRAFT_1569 - transporter, NhaC family (TC 2.A.35), at 1,627,007 to 1,628,467 _1569 Position (kb) 1625 1626 1627Strain fitness (log2 ratio) -3 -2 -1 0 1at 1624.662 kb on - strand, within B158DRAFT_1567at 1624.662 kb on - strand, within B158DRAFT_1567at 1624.677 kb on + strand, within B158DRAFT_1567at 1624.685 kb on - strand, within B158DRAFT_1567at 1624.834 kb on - strand, within B158DRAFT_1567at 1624.861 kb on + strand, within B158DRAFT_1567at 1624.904 kb on + strand, within B158DRAFT_1567at 1624.904 kb on + strand, within B158DRAFT_1567at 1624.971 kb on - strand, within B158DRAFT_1567at 1624.973 kb on + strand, within B158DRAFT_1567at 1624.981 kb on - strand, within B158DRAFT_1567at 1625.040 kb on + strand, within B158DRAFT_1567at 1625.048 kb on - strand, within B158DRAFT_1567at 1625.117 kb on + strand, within B158DRAFT_1567at 1625.120 kb on + strand, within B158DRAFT_1567at 1625.156 kb on + strand, within B158DRAFT_1567at 1625.156 kb on + strand, within B158DRAFT_1567at 1625.164 kb on - strand, within B158DRAFT_1567at 1625.215 kb on - strand, within B158DRAFT_1567at 1625.222 kb on - strand, within B158DRAFT_1567at 1625.231 kb on - strand, within B158DRAFT_1567at 1625.285 kb on + strand, within B158DRAFT_1567at 1625.290 kb on + strand, within B158DRAFT_1567at 1625.338 kb on + strand, within B158DRAFT_1567at 1625.359 kb on - strand, within B158DRAFT_1567at 1625.363 kb on + strand, within B158DRAFT_1567at 1625.421 kb on + strand, within B158DRAFT_1567at 1625.429 kb on - strand, within B158DRAFT_1567at 1625.458 kb on - strand, within B158DRAFT_1567at 1625.461 kb on - strand, within B158DRAFT_1567at 1625.467 kb on + strand, within B158DRAFT_1567at 1625.510 kb on + strand, within B158DRAFT_1567at 1625.514 kb on + strand, within B158DRAFT_1567at 1625.615 kb on + strandat 1625.623 kb on - strandat 1625.623 kb on - strandat 1625.648 kb on - strandat 1625.650 kb on - strandat 1625.650 kb on - strandat 1625.671 kb on - strandat 1625.685 kb on + strandat 1625.731 kb on + strandat 1625.732 kb on + strandat 1625.739 kb on - strandat 1625.843 kb on - strand, within B158DRAFT_1568at 1625.892 kb on + strand, within B158DRAFT_1568at 1625.904 kb on - strand, within B158DRAFT_1568at 1625.942 kb on - strand, within B158DRAFT_1568at 1625.949 kb on + strand, within B158DRAFT_1568at 1625.957 kb on - strand, within B158DRAFT_1568at 1625.995 kb on + strand, within B158DRAFT_1568at 1626.004 kb on + strand, within B158DRAFT_1568at 1626.009 kb on + strand, within B158DRAFT_1568at 1626.024 kb on + strand, within B158DRAFT_1568at 1626.083 kb on + strand, within B158DRAFT_1568at 1626.094 kb on + strand, within B158DRAFT_1568at 1626.094 kb on + strand, within B158DRAFT_1568at 1626.094 kb on + strand, within B158DRAFT_1568at 1626.094 kb on + strand, within B158DRAFT_1568at 1626.102 kb on - strand, within B158DRAFT_1568at 1626.102 kb on - strand, within B158DRAFT_1568at 1626.102 kb on - strand, within B158DRAFT_1568at 1626.102 kb on - strand, within B158DRAFT_1568at 1626.102 kb on - strand, within B158DRAFT_1568at 1626.104 kb on + strand, within B158DRAFT_1568at 1626.104 kb on + strand, within B158DRAFT_1568at 1626.112 kb on - strand, within B158DRAFT_1568at 1626.148 kb on + strand, within B158DRAFT_1568at 1626.153 kb on + strand, within B158DRAFT_1568at 1626.156 kb on - strand, within B158DRAFT_1568at 1626.156 kb on - strand, within B158DRAFT_1568at 1626.161 kb on - strand, within B158DRAFT_1568at 1626.227 kb on + strand, within B158DRAFT_1568at 1626.263 kb on - strand, within B158DRAFT_1568at 1626.263 kb on - strand, within B158DRAFT_1568at 1626.281 kb on - strand, within B158DRAFT_1568at 1626.346 kb on - strand, within B158DRAFT_1568at 1626.357 kb on + strand, within B158DRAFT_1568at 1626.375 kb on - strand, within B158DRAFT_1568at 1626.393 kb on + strand, within B158DRAFT_1568at 1626.393 kb on + strand, within B158DRAFT_1568at 1626.393 kb on + strand, within B158DRAFT_1568at 1626.401 kb on - strand, within B158DRAFT_1568at 1626.401 kb on - strand, within B158DRAFT_1568at 1626.401 kb on - strand, within B158DRAFT_1568at 1626.401 kb on - strand, within B158DRAFT_1568at 1626.401 kb on - strand, within B158DRAFT_1568at 1626.401 kb on - strand, within B158DRAFT_1568at 1626.401 kb on - strand, within B158DRAFT_1568at 1626.453 kb on - strand, within B158DRAFT_1568at 1626.471 kb on - strand, within B158DRAFT_1568at 1626.471 kb on - strand, within B158DRAFT_1568at 1626.520 kb on + strand, within B158DRAFT_1568at 1626.528 kb on - strand, within B158DRAFT_1568at 1626.530 kb on + strand, within B158DRAFT_1568at 1626.551 kb on - strand, within B158DRAFT_1568at 1626.642 kb on - strand, within B158DRAFT_1568at 1626.653 kb on + strand, within B158DRAFT_1568at 1626.670 kb on - strand, within B158DRAFT_1568at 1626.675 kb on + strand, within B158DRAFT_1568at 1626.675 kb on + strand, within B158DRAFT_1568at 1626.722 kb on - strand, within B158DRAFT_1568at 1626.756 kb on - strand, within B158DRAFT_1568at 1626.808 kb on - strand, within B158DRAFT_1568at 1626.858 kb on + strandat 1626.858 kb on + strandat 1626.858 kb on + strandat 1626.858 kb on + strandat 1626.858 kb on + strandat 1626.866 kb on - strandat 1626.866 kb on - strandat 1626.866 kb on - strandat 1626.866 kb on - strandat 1626.866 kb on - strandat 1626.894 kb on + strandat 1626.925 kb on + strandat 1626.925 kb on + strandat 1626.925 kb on + strandat 1626.933 kb on - strandat 1626.933 kb on - strandat 1626.933 kb on - strandat 1626.933 kb on - strandat 1626.933 kb on - strandat 1626.933 kb on - strandat 1626.933 kb on - strandat 1626.982 kb on - strandat 1626.986 kb on + strandat 1627.122 kb on + strandat 1627.172 kb on + strand, within B158DRAFT_1569at 1627.199 kb on + strand, within B158DRAFT_1569at 1627.232 kb on - strand, within B158DRAFT_1569at 1627.255 kb on - strand, within B158DRAFT_1569at 1627.288 kb on + strand, within B158DRAFT_1569at 1627.304 kb on + strand, within B158DRAFT_1569at 1627.312 kb on - strand, within B158DRAFT_1569at 1627.375 kb on - strand, within B158DRAFT_1569at 1627.377 kb on + strand, within B158DRAFT_1569at 1627.394 kb on + strand, within B158DRAFT_1569at 1627.406 kb on + strand, within B158DRAFT_1569at 1627.415 kb on + strand, within B158DRAFT_1569at 1627.439 kb on - strand, within B158DRAFT_1569at 1627.439 kb on - strand, within B158DRAFT_1569at 1627.467 kb on - strand, within B158DRAFT_1569at 1627.474 kb on + strand, within B158DRAFT_1569at 1627.503 kb on - strand, within B158DRAFT_1569at 1627.542 kb on + strand, within B158DRAFT_1569at 1627.542 kb on + strand, within B158DRAFT_1569at 1627.542 kb on + strand, within B158DRAFT_1569at 1627.542 kb on + strand, within B158DRAFT_1569at 1627.542 kb on + strand, within B158DRAFT_1569at 1627.542 kb on + strand, within B158DRAFT_1569at 1627.542 kb on + strand, within B158DRAFT_1569at 1627.542 kb on + strand, within B158DRAFT_1569at 1627.542 kb on + strand, within B158DRAFT_1569at 1627.542 kb on + strand, within B158DRAFT_1569at 1627.542 kb on + strand, within B158DRAFT_1569at 1627.542 kb on + strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.550 kb on - strand, within B158DRAFT_1569at 1627.560 kb on - strand, within B158DRAFT_1569at 1627.560 kb on - strand, within B158DRAFT_1569at 1627.600 kb on + strand, within B158DRAFT_1569at 1627.601 kb on + strand, within B158DRAFT_1569at 1627.601 kb on + strand, within B158DRAFT_1569at 1627.609 kb on - strand, within B158DRAFT_1569at 1627.617 kb on - strand, within B158DRAFT_1569at 1627.632 kb on + strand, within B158DRAFT_1569at 1627.642 kb on + strand, within B158DRAFT_1569at 1627.691 kb on - strand, within B158DRAFT_1569at 1627.744 kb on - strand, within B158DRAFT_1569at 1627.866 kb on - strand, within B158DRAFT_1569at 1627.918 kb on + strand, within B158DRAFT_1569at 1627.928 kb on + strand, within B158DRAFT_1569at 1627.928 kb on + strand, within B158DRAFT_1569at 1627.936 kb on - strand, within B158DRAFT_1569

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.0625 mg/ml
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1,624,662 - B158DRAFT_1567 0.30 -0.1
1,624,662 - B158DRAFT_1567 0.30 -0.4
1,624,677 + B158DRAFT_1567 0.31 -0.3
1,624,685 - B158DRAFT_1567 0.32 -1.5
1,624,834 - B158DRAFT_1567 0.42 -0.5
1,624,861 + B158DRAFT_1567 0.44 -0.7
1,624,904 + B158DRAFT_1567 0.47 -0.7
1,624,904 + B158DRAFT_1567 0.47 -0.1
1,624,971 - B158DRAFT_1567 0.52 -0.7
1,624,973 + B158DRAFT_1567 0.52 -0.5
1,624,981 - B158DRAFT_1567 0.52 -0.7
1,625,040 + B158DRAFT_1567 0.56 -1.6
1,625,048 - B158DRAFT_1567 0.57 -0.9
1,625,117 + B158DRAFT_1567 0.62 -0.1
1,625,120 + B158DRAFT_1567 0.62 -0.9
1,625,156 + B158DRAFT_1567 0.64 -1.0
1,625,156 + B158DRAFT_1567 0.64 -1.1
1,625,164 - B158DRAFT_1567 0.65 -1.3
1,625,215 - B158DRAFT_1567 0.69 -1.8
1,625,222 - B158DRAFT_1567 0.69 +0.2
1,625,231 - B158DRAFT_1567 0.70 -0.8
1,625,285 + B158DRAFT_1567 0.74 -0.5
1,625,290 + B158DRAFT_1567 0.74 -0.4
1,625,338 + B158DRAFT_1567 0.77 -0.5
1,625,359 - B158DRAFT_1567 0.79 -0.1
1,625,363 + B158DRAFT_1567 0.79 -0.9
1,625,421 + B158DRAFT_1567 0.83 +0.3
1,625,429 - B158DRAFT_1567 0.84 -0.3
1,625,458 - B158DRAFT_1567 0.86 +0.1
1,625,461 - B158DRAFT_1567 0.86 -0.3
1,625,467 + B158DRAFT_1567 0.86 -0.5
1,625,510 + B158DRAFT_1567 0.89 -0.5
1,625,514 + B158DRAFT_1567 0.90 -1.1
1,625,615 + -0.7
1,625,623 - -0.1
1,625,623 - -0.7
1,625,648 - -1.0
1,625,650 - -1.7
1,625,650 - -1.9
1,625,671 - -1.0
1,625,685 + -0.8
1,625,731 + -0.6
1,625,732 + -0.4
1,625,739 - -0.8
1,625,843 - B158DRAFT_1568 0.14 -0.9
1,625,892 + B158DRAFT_1568 0.18 -1.4
1,625,904 - B158DRAFT_1568 0.19 -1.1
1,625,942 - B158DRAFT_1568 0.22 -0.6
1,625,949 + B158DRAFT_1568 0.22 -1.3
1,625,957 - B158DRAFT_1568 0.23 -1.0
1,625,995 + B158DRAFT_1568 0.26 -0.8
1,626,004 + B158DRAFT_1568 0.26 +0.7
1,626,009 + B158DRAFT_1568 0.27 -0.9
1,626,024 + B158DRAFT_1568 0.28 -1.3
1,626,083 + B158DRAFT_1568 0.32 -0.4
1,626,094 + B158DRAFT_1568 0.33 -0.3
1,626,094 + B158DRAFT_1568 0.33 -0.5
1,626,094 + B158DRAFT_1568 0.33 -1.2
1,626,094 + B158DRAFT_1568 0.33 -0.5
1,626,102 - B158DRAFT_1568 0.34 -1.3
1,626,102 - B158DRAFT_1568 0.34 +0.0
1,626,102 - B158DRAFT_1568 0.34 -1.3
1,626,102 - B158DRAFT_1568 0.34 -1.1
1,626,102 - B158DRAFT_1568 0.34 +0.2
1,626,104 + B158DRAFT_1568 0.34 +0.2
1,626,104 + B158DRAFT_1568 0.34 -0.7
1,626,112 - B158DRAFT_1568 0.35 -1.4
1,626,148 + B158DRAFT_1568 0.37 -0.4
1,626,153 + B158DRAFT_1568 0.38 -0.8
1,626,156 - B158DRAFT_1568 0.38 -0.7
1,626,156 - B158DRAFT_1568 0.38 -0.8
1,626,161 - B158DRAFT_1568 0.38 -1.2
1,626,227 + B158DRAFT_1568 0.44 -0.9
1,626,263 - B158DRAFT_1568 0.46 -0.0
1,626,263 - B158DRAFT_1568 0.46 +0.3
1,626,281 - B158DRAFT_1568 0.48 -1.5
1,626,346 - B158DRAFT_1568 0.53 -0.8
1,626,357 + B158DRAFT_1568 0.53 -0.6
1,626,375 - B158DRAFT_1568 0.55 -0.5
1,626,393 + B158DRAFT_1568 0.56 -0.7
1,626,393 + B158DRAFT_1568 0.56 -0.7
1,626,393 + B158DRAFT_1568 0.56 -0.0
1,626,401 - B158DRAFT_1568 0.57 -0.1
1,626,401 - B158DRAFT_1568 0.57 -1.4
1,626,401 - B158DRAFT_1568 0.57 -0.7
1,626,401 - B158DRAFT_1568 0.57 -0.9
1,626,401 - B158DRAFT_1568 0.57 -2.3
1,626,401 - B158DRAFT_1568 0.57 -2.3
1,626,401 - B158DRAFT_1568 0.57 -0.8
1,626,453 - B158DRAFT_1568 0.61 -3.0
1,626,471 - B158DRAFT_1568 0.62 -1.7
1,626,471 - B158DRAFT_1568 0.62 -1.6
1,626,520 + B158DRAFT_1568 0.66 -1.1
1,626,528 - B158DRAFT_1568 0.67 -0.9
1,626,530 + B158DRAFT_1568 0.67 -0.8
1,626,551 - B158DRAFT_1568 0.68 +0.0
1,626,642 - B158DRAFT_1568 0.75 -1.4
1,626,653 + B158DRAFT_1568 0.76 -0.2
1,626,670 - B158DRAFT_1568 0.77 -0.5
1,626,675 + B158DRAFT_1568 0.78 -0.1
1,626,675 + B158DRAFT_1568 0.78 -1.1
1,626,722 - B158DRAFT_1568 0.81 -1.3
1,626,756 - B158DRAFT_1568 0.84 -1.3
1,626,808 - B158DRAFT_1568 0.88 -1.0
1,626,858 + -0.6
1,626,858 + -0.5
1,626,858 + -1.2
1,626,858 + -0.7
1,626,858 + -0.2
1,626,866 - -1.0
1,626,866 - -1.0
1,626,866 - -1.1
1,626,866 - -0.6
1,626,866 - -1.8
1,626,894 + -0.0
1,626,925 + -0.3
1,626,925 + -2.4
1,626,925 + -0.7
1,626,933 - -1.2
1,626,933 - -0.4
1,626,933 - +0.1
1,626,933 - -1.1
1,626,933 - +0.3
1,626,933 - -0.1
1,626,933 - +0.1
1,626,982 - +0.3
1,626,986 + -0.2
1,627,122 + -1.3
1,627,172 + B158DRAFT_1569 0.11 -0.6
1,627,199 + B158DRAFT_1569 0.13 -0.7
1,627,232 - B158DRAFT_1569 0.15 -1.1
1,627,255 - B158DRAFT_1569 0.17 -0.9
1,627,288 + B158DRAFT_1569 0.19 -0.1
1,627,304 + B158DRAFT_1569 0.20 -0.8
1,627,312 - B158DRAFT_1569 0.21 -0.1
1,627,375 - B158DRAFT_1569 0.25 -1.3
1,627,377 + B158DRAFT_1569 0.25 -0.1
1,627,394 + B158DRAFT_1569 0.26 -0.6
1,627,406 + B158DRAFT_1569 0.27 -1.2
1,627,415 + B158DRAFT_1569 0.28 -0.6
1,627,439 - B158DRAFT_1569 0.30 -1.3
1,627,439 - B158DRAFT_1569 0.30 +0.2
1,627,467 - B158DRAFT_1569 0.31 -1.0
1,627,474 + B158DRAFT_1569 0.32 -0.0
1,627,503 - B158DRAFT_1569 0.34 -0.8
1,627,542 + B158DRAFT_1569 0.37 -0.8
1,627,542 + B158DRAFT_1569 0.37 -0.6
1,627,542 + B158DRAFT_1569 0.37 -0.0
1,627,542 + B158DRAFT_1569 0.37 +1.4
1,627,542 + B158DRAFT_1569 0.37 -0.6
1,627,542 + B158DRAFT_1569 0.37 -0.7
1,627,542 + B158DRAFT_1569 0.37 -0.6
1,627,542 + B158DRAFT_1569 0.37 -0.6
1,627,542 + B158DRAFT_1569 0.37 +0.7
1,627,542 + B158DRAFT_1569 0.37 -0.9
1,627,542 + B158DRAFT_1569 0.37 -0.6
1,627,542 + B158DRAFT_1569 0.37 -0.4
1,627,550 - B158DRAFT_1569 0.37 -0.5
1,627,550 - B158DRAFT_1569 0.37 -1.1
1,627,550 - B158DRAFT_1569 0.37 -0.6
1,627,550 - B158DRAFT_1569 0.37 -0.6
1,627,550 - B158DRAFT_1569 0.37 +0.8
1,627,550 - B158DRAFT_1569 0.37 +0.0
1,627,550 - B158DRAFT_1569 0.37 -0.3
1,627,550 - B158DRAFT_1569 0.37 +0.2
1,627,550 - B158DRAFT_1569 0.37 -1.4
1,627,550 - B158DRAFT_1569 0.37 -1.3
1,627,550 - B158DRAFT_1569 0.37 -0.5
1,627,550 - B158DRAFT_1569 0.37 -1.0
1,627,550 - B158DRAFT_1569 0.37 -0.5
1,627,550 - B158DRAFT_1569 0.37 -0.6
1,627,550 - B158DRAFT_1569 0.37 -0.7
1,627,550 - B158DRAFT_1569 0.37 -0.6
1,627,550 - B158DRAFT_1569 0.37 -1.7
1,627,550 - B158DRAFT_1569 0.37 -2.5
1,627,560 - B158DRAFT_1569 0.38 -0.8
1,627,560 - B158DRAFT_1569 0.38 -0.9
1,627,600 + B158DRAFT_1569 0.41 -0.1
1,627,601 + B158DRAFT_1569 0.41 -0.5
1,627,601 + B158DRAFT_1569 0.41 -1.0
1,627,609 - B158DRAFT_1569 0.41 -1.0
1,627,617 - B158DRAFT_1569 0.42 -0.2
1,627,632 + B158DRAFT_1569 0.43 -1.7
1,627,642 + B158DRAFT_1569 0.43 +0.1
1,627,691 - B158DRAFT_1569 0.47 -1.1
1,627,744 - B158DRAFT_1569 0.50 -0.1
1,627,866 - B158DRAFT_1569 0.59 -0.9
1,627,918 + B158DRAFT_1569 0.62 -1.1
1,627,928 + B158DRAFT_1569 0.63 -1.8
1,627,928 + B158DRAFT_1569 0.63 -0.5
1,627,936 - B158DRAFT_1569 0.64 -0.5

Or see this region's nucleotide sequence